EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000008755 (Gene tree)
Gene ID: 107092823
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 14805 bases
Position: chrKL652518.1:79986-94790
Accession: 107092823
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000024579	AD	PF09793.9	5.7e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003828	-	1312	XM_015387484	ENSCVAP00000024579	196 (aa)	XP_015242970	UPI000742A1FD

Gene Model

Click here to download ENSCVAG00000008755's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000008755's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000008755	lsm12b	100	84.694	ENSG00000161654	LSM12	100	84.694	Homo_sapiens
ENSCVAG00000008755	lsm12b	100	98.469	ENSAPOG00000007907	lsm12b	100	98.469	Acanthochromis_polyacanthus
ENSCVAG00000008755	lsm12b	100	82.915	ENSAMEG00000018321	LSM12	100	82.915	Ailuropoda_melanoleuca
ENSCVAG00000008755	lsm12b	100	95.918	ENSACIG00000008538	lsm12b	100	95.918	Amphilophus_citrinellus
ENSCVAG00000008755	lsm12b	100	97.959	ENSAOCG00000021847	lsm12b	88	97.959	Amphiprion_ocellaris
ENSCVAG00000008755	lsm12b	100	97.959	ENSAPEG00000002252	lsm12b	100	97.959	Amphiprion_percula
ENSCVAG00000008755	lsm12b	100	96.429	ENSATEG00000005705	lsm12b	100	96.429	Anabas_testudineus
ENSCVAG00000008755	lsm12b	100	83.673	ENSACAG00000004618	LSM12	100	83.673	Anolis_carolinensis
ENSCVAG00000008755	lsm12b	100	84.694	ENSANAG00000029011	LSM12	100	85.455	Aotus_nancymaae
ENSCVAG00000008755	lsm12b	100	96.429	ENSACLG00000026332	lsm12b	100	96.429	Astatotilapia_calliptera
ENSCVAG00000008755	lsm12b	100	85.204	ENSAMXG00000036117	lsm12a	91	85.204	Astyanax_mexicanus
ENSCVAG00000008755	lsm12b	100	93.367	ENSAMXG00000032952	lsm12b	100	93.367	Astyanax_mexicanus
ENSCVAG00000008755	lsm12b	100	84.694	ENSBTAG00000016252	LSM12	100	84.694	Bos_taurus
ENSCVAG00000008755	lsm12b	100	84.694	ENSCJAG00000048480	LSM12	100	85.455	Callithrix_jacchus
ENSCVAG00000008755	lsm12b	100	84.694	ENSCAFG00000014379	LSM12	92	84.694	Canis_familiaris
ENSCVAG00000008755	lsm12b	100	84.694	ENSCAFG00020012173	LSM12	100	84.694	Canis_lupus_dingo
ENSCVAG00000008755	lsm12b	100	84.694	ENSCHIG00000018175	LSM12	100	84.694	Capra_hircus
ENSCVAG00000008755	lsm12b	100	84.694	ENSTSYG00000036361	LSM12	100	84.694	Carlito_syrichta
ENSCVAG00000008755	lsm12b	83	80.864	ENSCAPG00000009647	LSM12	89	80.864	Cavia_aperea
ENSCVAG00000008755	lsm12b	100	83.673	ENSCPOG00000012860	LSM12	100	84.545	Cavia_porcellus
ENSCVAG00000008755	lsm12b	100	84.694	ENSCCAG00000032905	LSM12	100	85.455	Cebus_capucinus
ENSCVAG00000008755	lsm12b	100	84.694	ENSCATG00000030577	-	100	85.455	Cercocebus_atys
ENSCVAG00000008755	lsm12b	100	84.184	ENSCLAG00000015759	LSM12	100	84.545	Chinchilla_lanigera
ENSCVAG00000008755	lsm12b	100	85.204	ENSCSAG00000003486	LSM12	100	85.204	Chlorocebus_sabaeus
ENSCVAG00000008755	lsm12b	56	85.321	ENSCHOG00000001198	LSM12	100	85.321	Choloepus_hoffmanni
ENSCVAG00000008755	lsm12b	100	85.204	ENSCPBG00000027105	LSM12	100	85.204	Chrysemys_picta_bellii
ENSCVAG00000008755	lsm12b	100	84.694	ENSCANG00000043328	LSM12	100	85.455	Colobus_angolensis_palliatus
ENSCVAG00000008755	lsm12b	100	84.694	ENSCGRG00001002094	Lsm12	100	85.455	Cricetulus_griseus_chok1gshd
ENSCVAG00000008755	lsm12b	89	77.011	ENSCGRG00000004316	Lsm12	98	77.011	Cricetulus_griseus_crigri
ENSCVAG00000008755	lsm12b	100	96.429	ENSCSEG00000008434	lsm12b	100	96.429	Cynoglossus_semilaevis
ENSCVAG00000008755	lsm12b	100	94.388	ENSDARG00000109510	lsm12b	100	94.388	Danio_rerio
ENSCVAG00000008755	lsm12b	100	86.735	ENSDARG00000028848	lsm12a	100	86.735	Danio_rerio
ENSCVAG00000008755	lsm12b	100	84.694	ENSDNOG00000002418	LSM12	91	84.694	Dasypus_novemcinctus
ENSCVAG00000008755	lsm12b	100	84.694	ENSDORG00000016381	Lsm12	100	85.455	Dipodomys_ordii
ENSCVAG00000008755	lsm12b	73	32.911	FBgn0036057	CG14164	83	32.911	Drosophila_melanogaster
ENSCVAG00000008755	lsm12b	83	33.735	FBgn0030364	Lsm12	76	34.337	Drosophila_melanogaster
ENSCVAG00000008755	lsm12b	100	84.184	ENSETEG00000008374	LSM12	100	84.184	Echinops_telfairi
ENSCVAG00000008755	lsm12b	88	76.301	ENSETEG00000011012	-	99	76.301	Echinops_telfairi
ENSCVAG00000008755	lsm12b	85	67.066	ENSEBUG00000016299	lsm12a	92	67.066	Eptatretus_burgeri
ENSCVAG00000008755	lsm12b	100	84.694	ENSEASG00005010155	LSM12	100	84.694	Equus_asinus_asinus
ENSCVAG00000008755	lsm12b	100	84.694	ENSECAG00000009071	LSM12	100	85.455	Equus_caballus
ENSCVAG00000008755	lsm12b	78	84.967	ENSEEUG00000002419	-	100	84.967	Erinaceus_europaeus
ENSCVAG00000008755	lsm12b	100	93.367	ENSELUG00000000256	-	100	93.367	Esox_lucius
ENSCVAG00000008755	lsm12b	100	94.898	ENSELUG00000015538	lsm12b	100	90.306	Esox_lucius
ENSCVAG00000008755	lsm12b	100	84.694	ENSFCAG00000037021	LSM12	100	84.694	Felis_catus
ENSCVAG00000008755	lsm12b	80	81.410	ENSFDAG00000008954	LSM12	91	81.410	Fukomys_damarensis
ENSCVAG00000008755	lsm12b	100	98.980	ENSFHEG00000019913	lsm12b	100	98.980	Fundulus_heteroclitus
ENSCVAG00000008755	lsm12b	81	96.835	ENSGMOG00000015449	lsm12b	100	96.835	Gadus_morhua
ENSCVAG00000008755	lsm12b	78	85.621	ENSGALG00000039803	LSM12	100	85.621	Gallus_gallus
ENSCVAG00000008755	lsm12b	100	99.490	ENSGAFG00000011829	lsm12b	100	99.490	Gambusia_affinis
ENSCVAG00000008755	lsm12b	81	97.468	ENSGACG00000003428	lsm12b	100	97.468	Gasterosteus_aculeatus
ENSCVAG00000008755	lsm12b	100	84.184	ENSGAGG00000021965	LSM12	100	84.184	Gopherus_agassizii
ENSCVAG00000008755	lsm12b	100	84.694	ENSGGOG00000010589	-	100	85.455	Gorilla_gorilla
ENSCVAG00000008755	lsm12b	85	95.808	ENSHBUG00000007667	lsm12b	74	95.808	Haplochromis_burtoni
ENSCVAG00000008755	lsm12b	100	84.694	ENSHGLG00000011411	LSM12	100	85.455	Heterocephalus_glaber_female
ENSCVAG00000008755	lsm12b	79	84.416	ENSHGLG00100000241	LSM12	82	84.416	Heterocephalus_glaber_male
ENSCVAG00000008755	lsm12b	100	95.408	ENSHCOG00000002094	lsm12b	100	95.408	Hippocampus_comes
ENSCVAG00000008755	lsm12b	100	92.857	ENSIPUG00000014800	lsm12	100	92.857	Ictalurus_punctatus
ENSCVAG00000008755	lsm12b	99	83.505	ENSIPUG00000008936	lsm12a	99	83.505	Ictalurus_punctatus
ENSCVAG00000008755	lsm12b	100	84.694	ENSSTOG00000007403	LSM12	100	85.455	Ictidomys_tridecemlineatus
ENSCVAG00000008755	lsm12b	96	75.263	ENSJJAG00000011793	-	100	75.263	Jaculus_jaculus
ENSCVAG00000008755	lsm12b	100	83.673	ENSJJAG00000004364	-	100	84.545	Jaculus_jaculus
ENSCVAG00000008755	lsm12b	80	72.956	ENSJJAG00000014652	-	95	72.956	Jaculus_jaculus
ENSCVAG00000008755	lsm12b	85	97.605	ENSKMAG00000007704	lsm12b	56	97.605	Kryptolebias_marmoratus
ENSCVAG00000008755	lsm12b	100	97.449	ENSLBEG00000027999	lsm12b	100	97.449	Labrus_bergylta
ENSCVAG00000008755	lsm12b	100	86.224	ENSLACG00000015981	LSM12	100	86.224	Latimeria_chalumnae
ENSCVAG00000008755	lsm12b	100	90.816	ENSLOCG00000013079	lsm12b	99	90.816	Lepisosteus_oculatus
ENSCVAG00000008755	lsm12b	100	84.694	ENSLAFG00000005202	LSM12	100	84.694	Loxodonta_africana
ENSCVAG00000008755	lsm12b	100	84.694	ENSMFAG00000031376	LSM12	100	85.455	Macaca_fascicularis
ENSCVAG00000008755	lsm12b	100	84.694	ENSMMUG00000006804	LSM12	100	85.455	Macaca_mulatta
ENSCVAG00000008755	lsm12b	65	73.563	ENSMMUG00000042106	-	100	73.563	Macaca_mulatta
ENSCVAG00000008755	lsm12b	100	84.694	ENSMNEG00000030594	-	100	85.455	Macaca_nemestrina
ENSCVAG00000008755	lsm12b	100	84.694	ENSMLEG00000039934	LSM12	100	85.455	Mandrillus_leucophaeus
ENSCVAG00000008755	lsm12b	100	97.449	ENSMAMG00000004279	lsm12b	100	97.449	Mastacembelus_armatus
ENSCVAG00000008755	lsm12b	100	96.429	ENSMZEG00005005754	lsm12b	100	96.429	Maylandia_zebra
ENSCVAG00000008755	lsm12b	100	85.204	ENSMICG00000037219	LSM12	100	86.364	Microcebus_murinus
ENSCVAG00000008755	lsm12b	100	72.959	ENSMOCG00000017015	-	86	72.959	Microtus_ochrogaster
ENSCVAG00000008755	lsm12b	100	84.694	ENSMOCG00000019878	-	100	85.455	Microtus_ochrogaster
ENSCVAG00000008755	lsm12b	100	97.449	ENSMMOG00000020848	lsm12b	100	97.449	Mola_mola
ENSCVAG00000008755	lsm12b	100	97.449	ENSMALG00000007578	lsm12b	100	97.449	Monopterus_albus
ENSCVAG00000008755	lsm12b	100	84.184	MGP_CAROLIEiJ_G0017241	Lsm12	100	84.545	Mus_caroli
ENSCVAG00000008755	lsm12b	100	84.694	ENSMUSG00000020922	Lsm12	100	85.455	Mus_musculus
ENSCVAG00000008755	lsm12b	100	77.934	MGP_PahariEiJ_G0018371	Lsm12	100	85.455	Mus_pahari
ENSCVAG00000008755	lsm12b	100	84.184	MGP_SPRETEiJ_G0018084	Lsm12	99	86.111	Mus_spretus
ENSCVAG00000008755	lsm12b	100	85.204	ENSMLUG00000006391	LSM12	100	85.204	Myotis_lucifugus
ENSCVAG00000008755	lsm12b	100	59.606	ENSNGAG00000015429	-	100	59.606	Nannospalax_galili
ENSCVAG00000008755	lsm12b	100	84.694	ENSNGAG00000001870	Lsm12	100	85.455	Nannospalax_galili
ENSCVAG00000008755	lsm12b	100	96.429	ENSNBRG00000006266	lsm12b	100	96.429	Neolamprologus_brichardi
ENSCVAG00000008755	lsm12b	100	84.694	ENSNLEG00000005580	-	100	85.455	Nomascus_leucogenys
ENSCVAG00000008755	lsm12b	85	84.337	ENSMEUG00000007501	-	100	84.337	Notamacropus_eugenii
ENSCVAG00000008755	lsm12b	100	84.694	ENSOPRG00000008552	LSM12	100	84.694	Ochotona_princeps
ENSCVAG00000008755	lsm12b	99	84.536	ENSODEG00000017998	-	99	84.536	Octodon_degus
ENSCVAG00000008755	lsm12b	100	77.041	ENSODEG00000007886	-	74	77.041	Octodon_degus
ENSCVAG00000008755	lsm12b	100	96.429	ENSONIG00000007933	lsm12b	100	96.429	Oreochromis_niloticus
ENSCVAG00000008755	lsm12b	99	79.487	ENSOCUG00000021254	-	100	79.487	Oryctolagus_cuniculus
ENSCVAG00000008755	lsm12b	100	82.915	ENSOCUG00000008566	-	100	82.915	Oryctolagus_cuniculus
ENSCVAG00000008755	lsm12b	99	78.974	ENSOCUG00000027889	-	100	78.974	Oryctolagus_cuniculus
ENSCVAG00000008755	lsm12b	99	78.462	ENSOCUG00000024823	-	100	78.462	Oryctolagus_cuniculus
ENSCVAG00000008755	lsm12b	100	96.939	ENSORLG00000011310	lsm12b	100	96.939	Oryzias_latipes
ENSCVAG00000008755	lsm12b	100	96.939	ENSORLG00020002060	lsm12b	92	96.939	Oryzias_latipes_hni
ENSCVAG00000008755	lsm12b	100	96.939	ENSORLG00015001647	lsm12b	92	96.939	Oryzias_latipes_hsok
ENSCVAG00000008755	lsm12b	100	96.939	ENSOMEG00000006184	lsm12b	92	96.939	Oryzias_melastigma
ENSCVAG00000008755	lsm12b	100	85.204	ENSOGAG00000010489	LSM12	100	85.204	Otolemur_garnettii
ENSCVAG00000008755	lsm12b	100	81.683	ENSOARG00000006589	LSM12	100	81.683	Ovis_aries
ENSCVAG00000008755	lsm12b	100	75.510	ENSPPAG00000034974	-	100	75.510	Pan_paniscus
ENSCVAG00000008755	lsm12b	100	84.694	ENSPPRG00000023420	LSM12	100	84.694	Panthera_pardus
ENSCVAG00000008755	lsm12b	72	83.636	ENSPTIG00000014850	-	100	83.636	Panthera_tigris_altaica
ENSCVAG00000008755	lsm12b	78	84.967	ENSPTIG00000012704	-	82	84.967	Panthera_tigris_altaica
ENSCVAG00000008755	lsm12b	100	84.694	ENSPTRG00000009261	LSM12	100	85.455	Pan_troglodytes
ENSCVAG00000008755	lsm12b	100	84.694	ENSPANG00000021315	-	100	85.455	Papio_anubis
ENSCVAG00000008755	lsm12b	100	84.184	ENSPKIG00000017932	-	100	84.184	Paramormyrops_kingsleyae
ENSCVAG00000008755	lsm12b	100	93.367	ENSPKIG00000021058	lsm12b	100	93.367	Paramormyrops_kingsleyae
ENSCVAG00000008755	lsm12b	100	96.429	ENSPMGG00000021344	lsm12b	100	96.429	Periophthalmus_magnuspinnatus
ENSCVAG00000008755	lsm12b	100	84.694	ENSPEMG00000012199	Lsm12	100	85.455	Peromyscus_maniculatus_bairdii
ENSCVAG00000008755	lsm12b	89	68.000	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSCVAG00000008755	lsm12b	100	84.694	ENSPCIG00000020244	LSM12	100	84.694	Phascolarctos_cinereus
ENSCVAG00000008755	lsm12b	100	98.469	ENSPFOG00000015930	lsm12b	100	98.469	Poecilia_formosa
ENSCVAG00000008755	lsm12b	100	98.469	ENSPLAG00000021089	lsm12b	100	98.469	Poecilia_latipinna
ENSCVAG00000008755	lsm12b	100	98.469	ENSPMEG00000012961	lsm12b	100	98.469	Poecilia_mexicana
ENSCVAG00000008755	lsm12b	87	99.415	ENSPREG00000010236	lsm12b	95	99.415	Poecilia_reticulata
ENSCVAG00000008755	lsm12b	100	84.694	ENSPPYG00000008344	LSM12	100	84.694	Pongo_abelii
ENSCVAG00000008755	lsm12b	81	84.906	ENSPCAG00000008790	LSM12	100	84.906	Procavia_capensis
ENSCVAG00000008755	lsm12b	100	84.694	ENSPCOG00000027951	LSM12	100	85.455	Propithecus_coquereli
ENSCVAG00000008755	lsm12b	100	84.184	ENSPVAG00000013706	LSM12	100	84.184	Pteropus_vampyrus
ENSCVAG00000008755	lsm12b	100	96.429	ENSPNYG00000003386	lsm12b	100	96.429	Pundamilia_nyererei
ENSCVAG00000008755	lsm12b	100	84.694	ENSPNAG00000018435	lsm12a	100	84.694	Pygocentrus_nattereri
ENSCVAG00000008755	lsm12b	100	93.367	ENSPNAG00000004186	lsm12b	100	93.367	Pygocentrus_nattereri
ENSCVAG00000008755	lsm12b	100	84.694	ENSRNOG00000020894	Lsm12	100	84.694	Rattus_norvegicus
ENSCVAG00000008755	lsm12b	100	84.694	ENSRBIG00000027910	LSM12	100	85.455	Rhinopithecus_bieti
ENSCVAG00000008755	lsm12b	100	84.694	ENSRROG00000045530	-	100	85.455	Rhinopithecus_roxellana
ENSCVAG00000008755	lsm12b	99	52.577	ENSRROG00000000537	-	99	52.577	Rhinopithecus_roxellana
ENSCVAG00000008755	lsm12b	100	84.694	ENSSBOG00000025310	LSM12	100	85.455	Saimiri_boliviensis_boliviensis
ENSCVAG00000008755	lsm12b	81	83.544	ENSSHAG00000014914	LSM12	100	83.544	Sarcophilus_harrisii
ENSCVAG00000008755	lsm12b	100	93.367	ENSSFOG00015020392	lsm12a	100	93.367	Scleropages_formosus
ENSCVAG00000008755	lsm12b	100	93.367	ENSSFOG00015009612	lsm12	100	93.367	Scleropages_formosus
ENSCVAG00000008755	lsm12b	100	97.449	ENSSMAG00000008089	lsm12b	100	97.449	Scophthalmus_maximus
ENSCVAG00000008755	lsm12b	100	97.449	ENSSDUG00000012711	lsm12b	100	97.449	Seriola_dumerili
ENSCVAG00000008755	lsm12b	100	97.449	ENSSLDG00000007404	lsm12b	100	97.449	Seriola_lalandi_dorsalis
ENSCVAG00000008755	lsm12b	78	84.314	ENSSARG00000005537	LSM12	100	84.314	Sorex_araneus
ENSCVAG00000008755	lsm12b	100	85.204	ENSSPUG00000011984	LSM12	100	85.204	Sphenodon_punctatus
ENSCVAG00000008755	lsm12b	100	97.959	ENSSPAG00000017058	lsm12b	100	97.959	Stegastes_partitus
ENSCVAG00000008755	lsm12b	100	84.694	ENSSSCG00000032394	LSM12	100	84.694	Sus_scrofa
ENSCVAG00000008755	lsm12b	100	96.429	ENSTRUG00000007121	lsm12b	100	96.429	Takifugu_rubripes
ENSCVAG00000008755	lsm12b	100	96.429	ENSTNIG00000014436	lsm12b	100	96.429	Tetraodon_nigroviridis
ENSCVAG00000008755	lsm12b	100	84.184	ENSTBEG00000012523	-	100	84.184	Tupaia_belangeri
ENSCVAG00000008755	lsm12b	100	82.143	ENSTBEG00000012392	-	100	82.143	Tupaia_belangeri
ENSCVAG00000008755	lsm12b	100	84.694	ENSTTRG00000010433	LSM12	100	84.694	Tursiops_truncatus
ENSCVAG00000008755	lsm12b	100	84.694	ENSUAMG00000006313	LSM12	100	84.694	Ursus_americanus
ENSCVAG00000008755	lsm12b	81	82.278	ENSUMAG00000012987	LSM12	90	82.278	Ursus_maritimus
ENSCVAG00000008755	lsm12b	100	80.102	ENSVPAG00000011145	LSM12	100	80.102	Vicugna_pacos
ENSCVAG00000008755	lsm12b	100	84.694	ENSVVUG00000017581	LSM12	100	84.694	Vulpes_vulpes
ENSCVAG00000008755	lsm12b	82	60.625	ENSXETG00000003371	lsm12	77	60.625	Xenopus_tropicalis
ENSCVAG00000008755	lsm12b	100	99.490	ENSXCOG00000003994	lsm12b	100	99.490	Xiphophorus_couchianus
ENSCVAG00000008755	lsm12b	100	99.490	ENSXMAG00000020950	lsm12b	100	99.490	Xiphophorus_maculatus