EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000008791 (Gene tree)
Gene ID: 107087642
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 6011 bases
Position: chrKL652689.1:276587-282597
Accession: 107087642
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000007157	TruB_N	PF01509.18	1.2e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003771	-	1494	XM_015379321	ENSCVAP00000007157	326 (aa)	XP_015234807	UPI000742A3EE

Gene Model

Click here to download ENSCVAG00000008791's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000008791's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000008791	trub1	79	65.891	ENSG00000165832	TRUB1	74	65.891	Homo_sapiens
ENSCVAG00000008791	trub1	75	83.265	ENSAPOG00000020565	trub1	92	82.283	Acanthochromis_polyacanthus
ENSCVAG00000008791	trub1	79	65.769	ENSAMEG00000014931	TRUB1	70	68.016	Ailuropoda_melanoleuca
ENSCVAG00000008791	trub1	77	77.689	ENSACIG00000003060	trub1	84	77.689	Amphilophus_citrinellus
ENSCVAG00000008791	trub1	75	83.673	ENSAOCG00000017188	trub1	91	83.267	Amphiprion_ocellaris
ENSCVAG00000008791	trub1	78	82.283	ENSAPEG00000015209	trub1	93	82.031	Amphiprion_percula
ENSCVAG00000008791	trub1	75	84.082	ENSATEG00000023291	trub1	88	84.082	Anabas_testudineus
ENSCVAG00000008791	trub1	77	67.200	ENSAPLG00000006808	TRUB1	90	66.932	Anas_platyrhynchos
ENSCVAG00000008791	trub1	77	64.143	ENSACAG00000009282	TRUB1	91	64.143	Anolis_carolinensis
ENSCVAG00000008791	trub1	79	66.023	ENSANAG00000022870	TRUB1	74	65.891	Aotus_nancymaae
ENSCVAG00000008791	trub1	78	81.496	ENSACLG00000000823	trub1	91	81.496	Astatotilapia_calliptera
ENSCVAG00000008791	trub1	86	70.280	ENSAMXG00000015845	trub1	96	70.280	Astyanax_mexicanus
ENSCVAG00000008791	trub1	79	67.054	ENSBTAG00000012955	TRUB1	70	69.388	Bos_taurus
ENSCVAG00000008791	trub1	79	65.891	ENSCJAG00000047815	TRUB1	74	65.891	Callithrix_jacchus
ENSCVAG00000008791	trub1	75	68.163	ENSCAFG00000011688	TRUB1	70	68.163	Canis_familiaris
ENSCVAG00000008791	trub1	75	68.163	ENSCAFG00020013237	TRUB1	70	68.163	Canis_lupus_dingo
ENSCVAG00000008791	trub1	79	66.279	ENSCHIG00000020884	TRUB1	77	66.279	Capra_hircus
ENSCVAG00000008791	trub1	79	64.341	ENSTSYG00000000446	TRUB1	74	64.341	Carlito_syrichta
ENSCVAG00000008791	trub1	69	58.667	ENSCAPG00000017088	TRUB1	84	60.185	Cavia_aperea
ENSCVAG00000008791	trub1	56	66.484	ENSCPOG00000040236	-	75	66.484	Cavia_porcellus
ENSCVAG00000008791	trub1	60	63.776	ENSCPOG00000030129	-	76	63.776	Cavia_porcellus
ENSCVAG00000008791	trub1	79	65.891	ENSCCAG00000028842	TRUB1	74	65.891	Cebus_capucinus
ENSCVAG00000008791	trub1	79	65.891	ENSCATG00000033431	TRUB1	74	65.891	Cercocebus_atys
ENSCVAG00000008791	trub1	56	65.385	ENSCLAG00000008664	TRUB1	75	65.385	Chinchilla_lanigera
ENSCVAG00000008791	trub1	79	65.891	ENSCSAG00000004891	TRUB1	74	65.891	Chlorocebus_sabaeus
ENSCVAG00000008791	trub1	74	61.157	ENSCHOG00000011931	TRUB1	70	61.157	Choloepus_hoffmanni
ENSCVAG00000008791	trub1	75	71.020	ENSCPBG00000003051	TRUB1	84	71.020	Chrysemys_picta_bellii
ENSCVAG00000008791	trub1	79	65.891	ENSCANG00000029445	TRUB1	74	65.891	Colobus_angolensis_palliatus
ENSCVAG00000008791	trub1	73	59.414	ENSCGRG00001010322	-	70	58.077	Cricetulus_griseus_chok1gshd
ENSCVAG00000008791	trub1	65	68.545	ENSCGRG00001016772	-	71	68.372	Cricetulus_griseus_chok1gshd
ENSCVAG00000008791	trub1	73	67.364	ENSCGRG00000010806	Trub1	75	67.480	Cricetulus_griseus_crigri
ENSCVAG00000008791	trub1	77	75.600	ENSCSEG00000011261	trub1	81	75.600	Cynoglossus_semilaevis
ENSCVAG00000008791	trub1	76	75.000	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSCVAG00000008791	trub1	79	63.953	ENSDNOG00000001069	TRUB1	74	63.953	Dasypus_novemcinctus
ENSCVAG00000008791	trub1	73	67.364	ENSDORG00000010431	Trub1	71	67.480	Dipodomys_ordii
ENSCVAG00000008791	trub1	57	66.176	ENSETEG00000009183	TRUB1	50	66.176	Echinops_telfairi
ENSCVAG00000008791	trub1	75	67.755	ENSEASG00005014739	TRUB1	70	67.755	Equus_asinus_asinus
ENSCVAG00000008791	trub1	75	67.755	ENSECAG00000007177	TRUB1	70	67.755	Equus_caballus
ENSCVAG00000008791	trub1	79	58.140	ENSEEUG00000013993	TRUB1	68	60.000	Erinaceus_europaeus
ENSCVAG00000008791	trub1	82	74.436	ENSELUG00000000502	trub1	92	74.436	Esox_lucius
ENSCVAG00000008791	trub1	78	67.059	ENSFCAG00000031927	TRUB1	70	68.571	Felis_catus
ENSCVAG00000008791	trub1	66	68.519	ENSFALG00000002232	TRUB1	83	68.519	Ficedula_albicollis
ENSCVAG00000008791	trub1	56	67.033	ENSFDAG00000008140	TRUB1	75	67.033	Fukomys_damarensis
ENSCVAG00000008791	trub1	90	77.211	ENSFHEG00000004016	trub1	97	77.211	Fundulus_heteroclitus
ENSCVAG00000008791	trub1	76	66.667	ENSGALG00000009091	TRUB1	88	66.667	Gallus_gallus
ENSCVAG00000008791	trub1	76	84.739	ENSGAFG00000009193	trub1	87	83.936	Gambusia_affinis
ENSCVAG00000008791	trub1	61	82.412	ENSGACG00000015387	trub1	98	82.412	Gasterosteus_aculeatus
ENSCVAG00000008791	trub1	77	70.400	ENSGAGG00000009758	TRUB1	70	71.311	Gopherus_agassizii
ENSCVAG00000008791	trub1	79	65.891	ENSGGOG00000004583	TRUB1	74	65.891	Gorilla_gorilla
ENSCVAG00000008791	trub1	78	81.102	ENSHBUG00000016787	trub1	91	81.102	Haplochromis_burtoni
ENSCVAG00000008791	trub1	79	64.729	ENSHGLG00000015314	TRUB1	74	64.729	Heterocephalus_glaber_female
ENSCVAG00000008791	trub1	56	66.484	ENSHGLG00100009183	TRUB1	77	66.484	Heterocephalus_glaber_male
ENSCVAG00000008791	trub1	78	78.431	ENSHCOG00000017877	trub1	92	78.431	Hippocampus_comes
ENSCVAG00000008791	trub1	78	78.039	ENSIPUG00000017559	trub1	90	78.039	Ictalurus_punctatus
ENSCVAG00000008791	trub1	79	65.504	ENSSTOG00000003641	TRUB1	73	67.755	Ictidomys_tridecemlineatus
ENSCVAG00000008791	trub1	78	65.490	ENSJJAG00000011800	Trub1	72	66.939	Jaculus_jaculus
ENSCVAG00000008791	trub1	80	81.538	ENSKMAG00000006232	trub1	94	81.538	Kryptolebias_marmoratus
ENSCVAG00000008791	trub1	78	80.784	ENSLBEG00000026722	trub1	89	80.784	Labrus_bergylta
ENSCVAG00000008791	trub1	77	71.146	ENSLACG00000014885	TRUB1	85	71.146	Latimeria_chalumnae
ENSCVAG00000008791	trub1	91	68.212	ENSLOCG00000012979	trub1	98	68.212	Lepisosteus_oculatus
ENSCVAG00000008791	trub1	78	67.194	ENSLAFG00000015452	TRUB1	77	63.504	Loxodonta_africana
ENSCVAG00000008791	trub1	79	65.891	ENSMFAG00000031767	TRUB1	74	65.891	Macaca_fascicularis
ENSCVAG00000008791	trub1	79	65.891	ENSMMUG00000001902	TRUB1	74	65.891	Macaca_mulatta
ENSCVAG00000008791	trub1	82	59.328	ENSMNEG00000044646	TRUB1	73	60.853	Macaca_nemestrina
ENSCVAG00000008791	trub1	79	65.891	ENSMLEG00000042655	TRUB1	74	65.891	Mandrillus_leucophaeus
ENSCVAG00000008791	trub1	78	81.496	ENSMZEG00005024095	trub1	91	81.496	Maylandia_zebra
ENSCVAG00000008791	trub1	76	67.470	ENSMGAG00000011135	TRUB1	86	67.470	Meleagris_gallopavo
ENSCVAG00000008791	trub1	76	63.052	ENSMAUG00000011101	Trub1	75	63.281	Mesocricetus_auratus
ENSCVAG00000008791	trub1	75	67.755	ENSMICG00000016324	TRUB1	70	67.755	Microcebus_murinus
ENSCVAG00000008791	trub1	76	66.397	ENSMOCG00000017759	Trub1	77	66.535	Microtus_ochrogaster
ENSCVAG00000008791	trub1	75	68.443	ENSMODG00000009676	TRUB1	70	67.063	Monodelphis_domestica
ENSCVAG00000008791	trub1	76	66.802	MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	Mus_caroli
ENSCVAG00000008791	trub1	76	65.992	ENSMUSG00000025086	Trub1	76	66.310	Mus_musculus
ENSCVAG00000008791	trub1	77	66.135	MGP_PahariEiJ_G0014588	Trub1	74	66.135	Mus_pahari
ENSCVAG00000008791	trub1	76	65.992	MGP_SPRETEiJ_G0024021	Trub1	76	66.310	Mus_spretus
ENSCVAG00000008791	trub1	78	67.059	ENSMPUG00000003556	TRUB1	70	68.571	Mustela_putorius_furo
ENSCVAG00000008791	trub1	75	67.347	ENSMLUG00000017686	TRUB1	72	67.347	Myotis_lucifugus
ENSCVAG00000008791	trub1	84	62.816	ENSNGAG00000018682	Trub1	70	67.755	Nannospalax_galili
ENSCVAG00000008791	trub1	77	82.072	ENSNBRG00000023393	trub1	90	82.072	Neolamprologus_brichardi
ENSCVAG00000008791	trub1	82	64.552	ENSNLEG00000016345	TRUB1	74	65.891	Nomascus_leucogenys
ENSCVAG00000008791	trub1	62	70.647	ENSMEUG00000006603	TRUB1	76	69.756	Notamacropus_eugenii
ENSCVAG00000008791	trub1	77	65.873	ENSOPRG00000009371	TRUB1	73	66.400	Ochotona_princeps
ENSCVAG00000008791	trub1	76	66.000	ENSODEG00000010854	TRUB1	72	66.000	Octodon_degus
ENSCVAG00000008791	trub1	77	81.673	ENSONIG00000007249	trub1	91	81.673	Oreochromis_niloticus
ENSCVAG00000008791	trub1	78	66.142	ENSOANG00000001556	TRUB1	86	65.385	Ornithorhynchus_anatinus
ENSCVAG00000008791	trub1	78	66.667	ENSOCUG00000009456	TRUB1	71	68.163	Oryctolagus_cuniculus
ENSCVAG00000008791	trub1	81	80.000	ENSORLG00000029719	trub1	97	79.044	Oryzias_latipes
ENSCVAG00000008791	trub1	81	79.623	ENSORLG00020016767	trub1	96	78.676	Oryzias_latipes_hni
ENSCVAG00000008791	trub1	81	80.377	ENSORLG00015014728	trub1	97	79.412	Oryzias_latipes_hsok
ENSCVAG00000008791	trub1	78	82.213	ENSOMEG00000014556	trub1	89	82.213	Oryzias_melastigma
ENSCVAG00000008791	trub1	75	68.163	ENSOGAG00000015895	TRUB1	70	68.163	Otolemur_garnettii
ENSCVAG00000008791	trub1	79	64.528	ENSOARG00000015591	TRUB1	75	64.528	Ovis_aries
ENSCVAG00000008791	trub1	79	65.891	ENSPPAG00000043645	TRUB1	74	65.891	Pan_paniscus
ENSCVAG00000008791	trub1	78	66.667	ENSPPRG00000007096	TRUB1	70	68.163	Panthera_pardus
ENSCVAG00000008791	trub1	78	66.667	ENSPTIG00000006378	TRUB1	70	68.163	Panthera_tigris_altaica
ENSCVAG00000008791	trub1	79	65.891	ENSPTRG00000002964	TRUB1	74	65.891	Pan_troglodytes
ENSCVAG00000008791	trub1	79	65.891	ENSPANG00000020712	TRUB1	74	65.891	Papio_anubis
ENSCVAG00000008791	trub1	52	77.976	ENSPKIG00000003852	trub1	72	77.976	Paramormyrops_kingsleyae
ENSCVAG00000008791	trub1	76	70.281	ENSPSIG00000012877	TRUB1	86	70.281	Pelodiscus_sinensis
ENSCVAG00000008791	trub1	82	76.404	ENSPMGG00000000075	trub1	96	76.404	Periophthalmus_magnuspinnatus
ENSCVAG00000008791	trub1	79	67.308	ENSPEMG00000011156	Trub1	76	67.308	Peromyscus_maniculatus_bairdii
ENSCVAG00000008791	trub1	75	68.443	ENSPCIG00000009729	TRUB1	68	67.063	Phascolarctos_cinereus
ENSCVAG00000008791	trub1	78	85.490	ENSPFOG00000009950	trub1	93	85.490	Poecilia_formosa
ENSCVAG00000008791	trub1	78	85.098	ENSPLAG00000013855	trub1	89	85.098	Poecilia_latipinna
ENSCVAG00000008791	trub1	78	85.490	ENSPMEG00000009064	trub1	92	85.490	Poecilia_mexicana
ENSCVAG00000008791	trub1	78	84.706	ENSPREG00000003343	trub1	92	84.706	Poecilia_reticulata
ENSCVAG00000008791	trub1	79	65.504	ENSPPYG00000002676	TRUB1	74	65.504	Pongo_abelii
ENSCVAG00000008791	trub1	78	61.265	ENSPCAG00000008427	TRUB1	72	61.265	Procavia_capensis
ENSCVAG00000008791	trub1	79	60.078	ENSPCOG00000024360	TRUB1	68	61.224	Propithecus_coquereli
ENSCVAG00000008791	trub1	62	69.652	ENSPVAG00000007575	TRUB1	76	69.652	Pteropus_vampyrus
ENSCVAG00000008791	trub1	78	81.496	ENSPNYG00000018614	trub1	91	81.496	Pundamilia_nyererei
ENSCVAG00000008791	trub1	85	62.230	ENSPNAG00000006881	trub1	91	61.871	Pygocentrus_nattereri
ENSCVAG00000008791	trub1	81	63.396	ENSRNOG00000017321	Trub1	78	63.396	Rattus_norvegicus
ENSCVAG00000008791	trub1	79	57.308	ENSRBIG00000033423	TRUB1	69	58.566	Rhinopithecus_bieti
ENSCVAG00000008791	trub1	79	65.891	ENSRROG00000033902	TRUB1	74	65.891	Rhinopithecus_roxellana
ENSCVAG00000008791	trub1	79	65.891	ENSSBOG00000024237	TRUB1	74	65.891	Saimiri_boliviensis_boliviensis
ENSCVAG00000008791	trub1	65	69.302	ENSSHAG00000009346	TRUB1	72	69.302	Sarcophilus_harrisii
ENSCVAG00000008791	trub1	77	77.778	ENSSFOG00015022124	trub1	86	77.778	Scleropages_formosus
ENSCVAG00000008791	trub1	78	81.961	ENSSMAG00000001020	trub1	91	81.961	Scophthalmus_maximus
ENSCVAG00000008791	trub1	74	83.402	ENSSDUG00000016414	trub1	92	82.745	Seriola_dumerili
ENSCVAG00000008791	trub1	74	83.402	ENSSLDG00000015486	trub1	92	82.745	Seriola_lalandi_dorsalis
ENSCVAG00000008791	trub1	77	69.200	ENSSPUG00000001642	TRUB1	86	69.200	Sphenodon_punctatus
ENSCVAG00000008791	trub1	77	83.600	ENSSPAG00000001217	trub1	90	83.600	Stegastes_partitus
ENSCVAG00000008791	trub1	77	66.800	ENSSSCG00000010653	TRUB1	73	66.800	Sus_scrofa
ENSCVAG00000008791	trub1	75	68.163	ENSTGUG00000010971	TRUB1	90	66.798	Taeniopygia_guttata
ENSCVAG00000008791	trub1	65	58.491	ENSTBEG00000002880	TRUB1	83	58.491	Tupaia_belangeri
ENSCVAG00000008791	trub1	62	69.154	ENSTTRG00000005767	TRUB1	77	69.154	Tursiops_truncatus
ENSCVAG00000008791	trub1	78	67.059	ENSUAMG00000024876	TRUB1	70	68.571	Ursus_americanus
ENSCVAG00000008791	trub1	79	66.279	ENSUMAG00000002411	TRUB1	77	64.796	Ursus_maritimus
ENSCVAG00000008791	trub1	75	68.163	ENSVPAG00000005507	TRUB1	70	68.163	Vicugna_pacos
ENSCVAG00000008791	trub1	75	68.163	ENSVVUG00000010085	TRUB1	59	68.163	Vulpes_vulpes
ENSCVAG00000008791	trub1	80	65.267	ENSXETG00000023828	trub1	93	65.267	Xenopus_tropicalis
ENSCVAG00000008791	trub1	76	84.274	ENSXCOG00000017847	trub1	88	84.274	Xiphophorus_couchianus
ENSCVAG00000008791	trub1	83	80.669	ENSXMAG00000014701	trub1	97	80.669	Xiphophorus_maculatus