EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000008960 (Gene tree)
Gene ID: 107082557
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 6704 bases
Position: chrKL652556.1:950687-957390
Accession: 107082557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000024705	Nucleoplasmin	PF03066.15	2.2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003501	-	2136	XM_015371310	ENSCVAP00000024705	296 (aa)	XP_015226796	UPI00074256C3

Gene Model

Click here to download ENSCVAG00000008960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000008960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000008960	npm1a	97	41.967	ENSCVAG00000013016	npm1b	96	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000008960	npm1a	100	71.096	ENSAPOG00000002813	npm1a	100	69.103	Acanthochromis_polyacanthus
ENSCVAG00000008960	npm1a	94	70.671	ENSACIG00000014201	npm1a	100	68.551	Amphilophus_citrinellus
ENSCVAG00000008960	npm1a	89	65.779	ENSAOCG00000004978	npm1a	100	63.118	Amphiprion_ocellaris
ENSCVAG00000008960	npm1a	100	72.000	ENSAPEG00000008594	npm1a	100	71.667	Amphiprion_percula
ENSCVAG00000008960	npm1a	99	70.779	ENSATEG00000008885	npm1a	99	70.130	Anabas_testudineus
ENSCVAG00000008960	npm1a	97	65.625	ENSACLG00000008376	npm1a	96	65.278	Astatotilapia_calliptera
ENSCVAG00000008960	npm1a	98	55.973	ENSAMXG00000010155	npm1a	98	59.310	Astyanax_mexicanus
ENSCVAG00000008960	npm1a	100	56.419	ENSCSEG00000011165	npm1a	97	75.484	Cynoglossus_semilaevis
ENSCVAG00000008960	npm1a	97	67.361	ENSDARG00000014329	npm1a	99	67.361	Danio_rerio
ENSCVAG00000008960	npm1a	94	36.646	ENSEBUG00000012753	npm1a	90	36.646	Eptatretus_burgeri
ENSCVAG00000008960	npm1a	100	66.445	ENSELUG00000013705	npm1a	100	65.449	Esox_lucius
ENSCVAG00000008960	npm1a	100	74.751	ENSFHEG00000012496	npm1a	100	74.419	Fundulus_heteroclitus
ENSCVAG00000008960	npm1a	100	69.307	ENSGAFG00000013059	npm1a	100	69.307	Gambusia_affinis
ENSCVAG00000008960	npm1a	99	64.120	ENSGACG00000020319	npm1a	99	63.851	Gasterosteus_aculeatus
ENSCVAG00000008960	npm1a	99	68.553	ENSHBUG00000000776	npm1a	100	67.925	Haplochromis_burtoni
ENSCVAG00000008960	npm1a	100	55.116	ENSHCOG00000001059	npm1a	98	55.518	Hippocampus_comes
ENSCVAG00000008960	npm1a	98	58.249	ENSIPUG00000019452	npm1	99	58.249	Ictalurus_punctatus
ENSCVAG00000008960	npm1a	100	70.946	ENSKMAG00000010709	npm1a	100	72.635	Kryptolebias_marmoratus
ENSCVAG00000008960	npm1a	100	68.333	ENSLBEG00000008793	npm1a	99	68.581	Labrus_bergylta
ENSCVAG00000008960	npm1a	85	54.613	ENSLOCG00000009683	npm1a	100	54.613	Lepisosteus_oculatus
ENSCVAG00000008960	npm1a	100	71.237	ENSMAMG00000009344	npm1a	82	71.525	Mastacembelus_armatus
ENSCVAG00000008960	npm1a	99	67.192	ENSMZEG00005013717	npm1a	100	66.877	Maylandia_zebra
ENSCVAG00000008960	npm1a	95	70.671	ENSMMOG00000007980	npm1a	100	69.965	Mola_mola
ENSCVAG00000008960	npm1a	100	70.100	ENSMALG00000001146	npm1a	100	70.764	Monopterus_albus
ENSCVAG00000008960	npm1a	99	63.863	ENSNBRG00000013172	npm1a	100	63.950	Neolamprologus_brichardi
ENSCVAG00000008960	npm1a	99	66.340	ENSONIG00000001860	npm1a	99	66.667	Oreochromis_niloticus
ENSCVAG00000008960	npm1a	100	70.470	ENSORLG00000010179	npm1a	100	70.805	Oryzias_latipes
ENSCVAG00000008960	npm1a	100	70.805	ENSORLG00020020817	npm1a	100	71.477	Oryzias_latipes_hni
ENSCVAG00000008960	npm1a	100	70.470	ENSORLG00015003439	npm1a	100	70.805	Oryzias_latipes_hsok
ENSCVAG00000008960	npm1a	100	69.463	ENSOMEG00000007083	npm1a	100	69.128	Oryzias_melastigma
ENSCVAG00000008960	npm1a	100	55.082	ENSPKIG00000023943	npm1a	100	53.770	Paramormyrops_kingsleyae
ENSCVAG00000008960	npm1a	100	70.530	ENSPFOG00000019173	npm1a	100	71.523	Poecilia_formosa
ENSCVAG00000008960	npm1a	100	70.134	ENSPLAG00000001093	npm1a	100	69.799	Poecilia_latipinna
ENSCVAG00000008960	npm1a	100	70.530	ENSPMEG00000012523	npm1a	100	71.523	Poecilia_mexicana
ENSCVAG00000008960	npm1a	100	71.523	ENSPREG00000001647	npm1a	100	71.192	Poecilia_reticulata
ENSCVAG00000008960	npm1a	99	67.732	ENSPNYG00000019321	npm1a	100	69.649	Pundamilia_nyererei
ENSCVAG00000008960	npm1a	98	61.074	ENSPNAG00000026891	npm1a	98	62.963	Pygocentrus_nattereri
ENSCVAG00000008960	npm1a	100	61.921	ENSSFOG00015007074	npm1a	100	61.258	Scleropages_formosus
ENSCVAG00000008960	npm1a	100	70.764	ENSSMAG00000019090	npm1a	100	70.432	Scophthalmus_maximus
ENSCVAG00000008960	npm1a	100	70.903	ENSSDUG00000015609	npm1a	100	70.903	Seriola_dumerili
ENSCVAG00000008960	npm1a	100	71.477	ENSSLDG00000017849	npm1a	100	71.477	Seriola_lalandi_dorsalis
ENSCVAG00000008960	npm1a	100	55.743	ENSSPAG00000021660	npm1a	100	55.369	Stegastes_partitus
ENSCVAG00000008960	npm1a	100	71.287	ENSTRUG00000024003	npm1a	100	71.287	Takifugu_rubripes
ENSCVAG00000008960	npm1a	100	69.231	ENSTNIG00000010773	npm1a	100	68.227	Tetraodon_nigroviridis
ENSCVAG00000008960	npm1a	99	67.347	ENSXCOG00000005958	npm1a	100	68.070	Xiphophorus_couchianus
ENSCVAG00000008960	npm1a	100	72.937	ENSXMAG00000000396	npm1a	100	72.607	Xiphophorus_maculatus