EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000009058 (Gene tree)
Gene ID: 107103273
Gene Symbol: r3hdm2
Alias: -
Full Name: R3H domain containing 2
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 58853 bases
Position: chrKL652534.1:1098503-1157355
Accession: 107103273
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000007343	R3H	PF01424.22	7.5e-11	1	1
ENSCVAP00000024736	R3H	PF01424.22	8.8e-11	1	1
ENSCVAP00000007389	R3H	PF01424.22	9.4e-11	1	1
ENSCVAP00000007400	R3H	PF01424.22	9.4e-11	1	1
ENSCVAP00000007376	R3H	PF01424.22	9.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003469	-	2655	-	ENSCVAP00000007343	884 (aa)	-	-
ENSCVAT00000003424	-	5678	XM_015402989	ENSCVAP00000024736	1040 (aa)	XP_015258475	UPI0007428CD8
ENSCVAT00000003412	-	5723	XM_015402970	ENSCVAP00000007376	1055 (aa)	XP_015258456	-
ENSCVAT00000003372	-	5776	XM_015402918	ENSCVAP00000007400	1073 (aa)	XP_015258404	UPI000742BC33
ENSCVAT00000003393	-	5777	XM_015402923	ENSCVAP00000007389	1073 (aa)	XP_015258409	UPI000742BC33

Gene Model

Click here to download ENSCVAG00000009058's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009058's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000009058	r3hdm2	82	53.081	ENSCVAG00000007582	r3hdm1	79	62.718

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000009058	r3hdm2	100	66.374	ENSG00000179912	R3HDM2	89	77.912	Homo_sapiens
ENSCVAG00000009058	r3hdm2	100	89.945	ENSAPOG00000020341	r3hdm2	100	90.850	Acanthochromis_polyacanthus
ENSCVAG00000009058	r3hdm2	95	67.053	ENSAMEG00000004812	R3HDM2	99	63.978	Ailuropoda_melanoleuca
ENSCVAG00000009058	r3hdm2	100	87.033	ENSACIG00000016146	r3hdm2	97	86.264	Amphilophus_citrinellus
ENSCVAG00000009058	r3hdm2	100	90.150	ENSAOCG00000023694	r3hdm2	100	91.071	Amphiprion_ocellaris
ENSCVAG00000009058	r3hdm2	100	90.150	ENSAPEG00000008851	r3hdm2	100	91.071	Amphiprion_percula
ENSCVAG00000009058	r3hdm2	100	86.895	ENSATEG00000025024	r3hdm2	100	88.662	Anabas_testudineus
ENSCVAG00000009058	r3hdm2	99	56.716	ENSAPLG00000004298	R3HDM2	89	74.286	Anas_platyrhynchos
ENSCVAG00000009058	r3hdm2	100	61.088	ENSACAG00000006388	R3HDM2	99	59.797	Anolis_carolinensis
ENSCVAG00000009058	r3hdm2	100	62.217	ENSANAG00000031310	-	98	61.040	Aotus_nancymaae
ENSCVAG00000009058	r3hdm2	100	66.740	ENSANAG00000025397	-	99	62.289	Aotus_nancymaae
ENSCVAG00000009058	r3hdm2	100	90.602	ENSACLG00000019106	r3hdm2	100	90.960	Astatotilapia_calliptera
ENSCVAG00000009058	r3hdm2	100	69.444	ENSAMXG00000017180	r3hdm2	99	71.026	Astyanax_mexicanus
ENSCVAG00000009058	r3hdm2	100	63.588	ENSBTAG00000018361	R3HDM2	96	63.807	Bos_taurus
ENSCVAG00000009058	r3hdm2	100	66.520	ENSCJAG00000007365	R3HDM2	99	63.083	Callithrix_jacchus
ENSCVAG00000009058	r3hdm2	100	63.492	ENSCAFG00000000215	R3HDM2	99	61.968	Canis_familiaris
ENSCVAG00000009058	r3hdm2	100	66.222	ENSCAFG00020023713	R3HDM2	99	63.879	Canis_lupus_dingo
ENSCVAG00000009058	r3hdm2	100	64.839	ENSCHIG00000014022	R3HDM2	96	65.764	Capra_hircus
ENSCVAG00000009058	r3hdm2	100	66.630	ENSTSYG00000001449	R3HDM2	96	64.694	Carlito_syrichta
ENSCVAG00000009058	r3hdm2	99	66.071	ENSCPOG00000009217	R3HDM2	99	63.824	Cavia_porcellus
ENSCVAG00000009058	r3hdm2	86	67.730	ENSCCAG00000026083	R3HDM2	99	63.046	Cebus_capucinus
ENSCVAG00000009058	r3hdm2	100	66.630	ENSCATG00000036929	R3HDM2	96	65.764	Cercocebus_atys
ENSCVAG00000009058	r3hdm2	99	65.977	ENSCLAG00000011997	R3HDM2	99	64.552	Chinchilla_lanigera
ENSCVAG00000009058	r3hdm2	99	65.417	ENSCSAG00000004911	R3HDM2	96	65.891	Chlorocebus_sabaeus
ENSCVAG00000009058	r3hdm2	73	65.209	ENSCHOG00000005636	R3HDM2	89	66.468	Choloepus_hoffmanni
ENSCVAG00000009058	r3hdm2	100	60.751	ENSCPBG00000013922	R3HDM2	99	62.534	Chrysemys_picta_bellii
ENSCVAG00000009058	r3hdm2	100	66.667	ENSCANG00000043807	R3HDM2	96	65.667	Colobus_angolensis_palliatus
ENSCVAG00000009058	r3hdm2	99	63.321	ENSCGRG00001017324	R3hdm2	96	63.279	Cricetulus_griseus_chok1gshd
ENSCVAG00000009058	r3hdm2	100	62.701	ENSCGRG00000003862	R3hdm2	96	63.279	Cricetulus_griseus_crigri
ENSCVAG00000009058	r3hdm2	100	88.126	ENSCSEG00000010925	r3hdm2	99	89.106	Cynoglossus_semilaevis
ENSCVAG00000009058	r3hdm2	100	68.326	ENSDARG00000102610	r3hdm2	99	72.863	Danio_rerio
ENSCVAG00000009058	r3hdm2	99	64.393	ENSDNOG00000015033	R3HDM2	100	64.205	Dasypus_novemcinctus
ENSCVAG00000009058	r3hdm2	100	63.237	ENSDORG00000011462	R3hdm2	97	64.116	Dipodomys_ordii
ENSCVAG00000009058	r3hdm2	100	64.051	ENSEASG00005007091	R3HDM2	99	64.292	Equus_asinus_asinus
ENSCVAG00000009058	r3hdm2	99	64.948	ENSECAG00000003157	R3HDM2	96	65.922	Equus_caballus
ENSCVAG00000009058	r3hdm2	100	77.440	ENSELUG00000015969	r3hdm2	100	76.455	Esox_lucius
ENSCVAG00000009058	r3hdm2	100	65.934	ENSFCAG00000000192	R3HDM2	98	63.876	Felis_catus
ENSCVAG00000009058	r3hdm2	81	63.182	ENSFALG00000000255	R3HDM2	95	61.330	Ficedula_albicollis
ENSCVAG00000009058	r3hdm2	100	63.425	ENSFDAG00000019385	R3HDM2	99	63.458	Fukomys_damarensis
ENSCVAG00000009058	r3hdm2	100	96.365	ENSFHEG00000016484	r3hdm2	100	96.365	Fundulus_heteroclitus
ENSCVAG00000009058	r3hdm2	95	80.273	ENSGMOG00000007961	r3hdm2	100	80.469	Gadus_morhua
ENSCVAG00000009058	r3hdm2	99	64.316	ENSGALG00000043736	R3HDM2	99	62.844	Gallus_gallus
ENSCVAG00000009058	r3hdm2	100	96.209	ENSGAFG00000013887	r3hdm2	100	96.086	Gambusia_affinis
ENSCVAG00000009058	r3hdm2	95	88.098	ENSGACG00000006442	r3hdm2	100	88.390	Gasterosteus_aculeatus
ENSCVAG00000009058	r3hdm2	100	60.928	ENSGAGG00000017797	R3HDM2	99	61.660	Gopherus_agassizii
ENSCVAG00000009058	r3hdm2	100	66.630	ENSGGOG00000015007	R3HDM2	96	65.764	Gorilla_gorilla
ENSCVAG00000009058	r3hdm2	95	59.885	ENSHGLG00000010421	-	97	58.525	Heterocephalus_glaber_female
ENSCVAG00000009058	r3hdm2	99	65.381	ENSHGLG00000010434	-	99	64.011	Heterocephalus_glaber_female
ENSCVAG00000009058	r3hdm2	99	65.287	ENSHGLG00100004183	-	99	63.918	Heterocephalus_glaber_male
ENSCVAG00000009058	r3hdm2	97	58.192	ENSHGLG00100018871	-	96	56.967	Heterocephalus_glaber_male
ENSCVAG00000009058	r3hdm2	100	85.620	ENSHCOG00000001142	r3hdm2	97	85.782	Hippocampus_comes
ENSCVAG00000009058	r3hdm2	100	76.011	ENSIPUG00000023873	r3hdm2	100	76.011	Ictalurus_punctatus
ENSCVAG00000009058	r3hdm2	100	63.892	ENSSTOG00000013424	R3HDM2	99	59.490	Ictidomys_tridecemlineatus
ENSCVAG00000009058	r3hdm2	100	64.078	ENSJJAG00000010001	R3hdm2	96	65.150	Jaculus_jaculus
ENSCVAG00000009058	r3hdm2	100	90.414	ENSKMAG00000012695	r3hdm2	97	90.226	Kryptolebias_marmoratus
ENSCVAG00000009058	r3hdm2	100	89.245	ENSLBEG00000013115	r3hdm2	96	89.046	Labrus_bergylta
ENSCVAG00000009058	r3hdm2	95	66.441	ENSLACG00000019064	r3hdm2	100	64.956	Latimeria_chalumnae
ENSCVAG00000009058	r3hdm2	99	72.328	ENSLOCG00000005976	r3hdm2	99	71.851	Lepisosteus_oculatus
ENSCVAG00000009058	r3hdm2	99	65.613	ENSLAFG00000006510	R3HDM2	99	64.907	Loxodonta_africana
ENSCVAG00000009058	r3hdm2	100	66.630	ENSMFAG00000036385	R3HDM2	96	65.764	Macaca_fascicularis
ENSCVAG00000009058	r3hdm2	100	66.630	ENSMMUG00000021789	R3HDM2	96	66.126	Macaca_mulatta
ENSCVAG00000009058	r3hdm2	100	66.777	ENSMNEG00000025314	R3HDM2	96	65.764	Macaca_nemestrina
ENSCVAG00000009058	r3hdm2	100	66.740	ENSMLEG00000028915	R3HDM2	96	65.861	Mandrillus_leucophaeus
ENSCVAG00000009058	r3hdm2	100	90.274	ENSMAMG00000009793	r3hdm2	100	90.207	Mastacembelus_armatus
ENSCVAG00000009058	r3hdm2	100	90.038	ENSMZEG00005007319	r3hdm2	100	90.395	Maylandia_zebra
ENSCVAG00000009058	r3hdm2	100	65.864	ENSMICG00000012389	R3HDM2	96	62.949	Microcebus_murinus
ENSCVAG00000009058	r3hdm2	99	64.124	ENSMOCG00000014425	R3hdm2	99	63.168	Microtus_ochrogaster
ENSCVAG00000009058	r3hdm2	100	85.980	ENSMMOG00000007448	r3hdm2	98	86.418	Mola_mola
ENSCVAG00000009058	r3hdm2	90	84.276	ENSMALG00000010211	r3hdm2	98	84.241	Monopterus_albus
ENSCVAG00000009058	r3hdm2	100	63.158	MGP_CAROLIEiJ_G0015896	R3hdm2	96	64.791	Mus_caroli
ENSCVAG00000009058	r3hdm2	99	64.568	ENSMUSG00000025404	R3hdm2	99	63.449	Mus_musculus
ENSCVAG00000009058	r3hdm2	100	62.672	MGP_PahariEiJ_G0031189	R3hdm2	96	65.049	Mus_pahari
ENSCVAG00000009058	r3hdm2	99	64.540	MGP_SPRETEiJ_G0016722	R3hdm2	99	63.143	Mus_spretus
ENSCVAG00000009058	r3hdm2	97	64.474	ENSMPUG00000001818	R3HDM2	96	63.704	Mustela_putorius_furo
ENSCVAG00000009058	r3hdm2	99	65.278	ENSMLUG00000004980	R3HDM2	99	63.297	Myotis_lucifugus
ENSCVAG00000009058	r3hdm2	99	64.940	ENSNGAG00000018800	R3hdm2	96	65.825	Nannospalax_galili
ENSCVAG00000009058	r3hdm2	100	86.799	ENSNBRG00000004483	r3hdm2	99	87.459	Neolamprologus_brichardi
ENSCVAG00000009058	r3hdm2	100	66.740	ENSNLEG00000017351	R3HDM2	99	64.055	Nomascus_leucogenys
ENSCVAG00000009058	r3hdm2	99	56.377	ENSMEUG00000008588	R3HDM2	99	55.309	Notamacropus_eugenii
ENSCVAG00000009058	r3hdm2	100	60.884	ENSOPRG00000013670	R3HDM2	96	58.431	Ochotona_princeps
ENSCVAG00000009058	r3hdm2	100	87.896	ENSONIG00000005075	r3hdm2	100	87.800	Oreochromis_niloticus
ENSCVAG00000009058	r3hdm2	99	64.576	ENSOCUG00000013258	R3HDM2	96	65.081	Oryctolagus_cuniculus
ENSCVAG00000009058	r3hdm2	100	88.537	ENSORLG00000005502	r3hdm2	100	88.816	Oryzias_latipes
ENSCVAG00000009058	r3hdm2	100	88.720	ENSORLG00020017069	r3hdm2	100	89.005	Oryzias_latipes_hni
ENSCVAG00000009058	r3hdm2	100	88.815	ENSORLG00015012735	r3hdm2	100	89.100	Oryzias_latipes_hsok
ENSCVAG00000009058	r3hdm2	100	82.732	ENSOMEG00000018079	r3hdm2	99	80.096	Oryzias_melastigma
ENSCVAG00000009058	r3hdm2	99	62.664	ENSOGAG00000012055	R3HDM2	96	63.178	Otolemur_garnettii
ENSCVAG00000009058	r3hdm2	92	57.862	ENSOGAG00000027966	-	90	57.849	Otolemur_garnettii
ENSCVAG00000009058	r3hdm2	100	63.531	ENSOARG00000006929	R3HDM2	96	63.618	Ovis_aries
ENSCVAG00000009058	r3hdm2	100	66.851	ENSPPAG00000034395	R3HDM2	96	65.957	Pan_paniscus
ENSCVAG00000009058	r3hdm2	100	65.934	ENSPPRG00000009240	R3HDM2	99	62.144	Panthera_pardus
ENSCVAG00000009058	r3hdm2	100	65.934	ENSPTIG00000008752	R3HDM2	99	62.144	Panthera_tigris_altaica
ENSCVAG00000009058	r3hdm2	100	66.740	ENSPTRG00000046457	R3HDM2	96	65.861	Pan_troglodytes
ENSCVAG00000009058	r3hdm2	100	66.740	ENSPANG00000024002	R3HDM2	95	66.740	Papio_anubis
ENSCVAG00000009058	r3hdm2	100	77.757	ENSPKIG00000003171	r3hdm2	100	78.437	Paramormyrops_kingsleyae
ENSCVAG00000009058	r3hdm2	64	55.523	ENSPSIG00000006954	R3HDM2	99	52.436	Pelodiscus_sinensis
ENSCVAG00000009058	r3hdm2	100	86.049	ENSPMGG00000007061	r3hdm2	99	85.268	Periophthalmus_magnuspinnatus
ENSCVAG00000009058	r3hdm2	99	64.192	ENSPEMG00000015964	R3hdm2	96	64.320	Peromyscus_maniculatus_bairdii
ENSCVAG00000009058	r3hdm2	100	65.132	ENSPCIG00000023841	R3HDM2	100	60.181	Phascolarctos_cinereus
ENSCVAG00000009058	r3hdm2	100	90.967	ENSPFOG00000006077	r3hdm2	92	96.056	Poecilia_formosa
ENSCVAG00000009058	r3hdm2	100	96.682	ENSPLAG00000002971	r3hdm2	100	96.682	Poecilia_latipinna
ENSCVAG00000009058	r3hdm2	100	96.682	ENSPMEG00000005330	r3hdm2	100	96.682	Poecilia_mexicana
ENSCVAG00000009058	r3hdm2	100	96.209	ENSPREG00000008424	r3hdm2	100	96.209	Poecilia_reticulata
ENSCVAG00000009058	r3hdm2	97	61.768	ENSPPYG00000004685	R3HDM2	77	60.444	Pongo_abelii
ENSCVAG00000009058	r3hdm2	91	80.808	ENSPCAG00000014642	R3HDM2	92	78.799	Procavia_capensis
ENSCVAG00000009058	r3hdm2	100	66.077	ENSPCOG00000013201	R3HDM2	96	64.300	Propithecus_coquereli
ENSCVAG00000009058	r3hdm2	99	65.619	ENSPVAG00000003967	R3HDM2	99	63.828	Pteropus_vampyrus
ENSCVAG00000009058	r3hdm2	100	77.848	ENSPNYG00000013479	r3hdm2	100	82.401	Pundamilia_nyererei
ENSCVAG00000009058	r3hdm2	100	75.316	ENSPNAG00000017473	r3hdm2	100	76.763	Pygocentrus_nattereri
ENSCVAG00000009058	r3hdm2	100	62.606	ENSRNOG00000007801	R3hdm2	96	64.156	Rattus_norvegicus
ENSCVAG00000009058	r3hdm2	100	62.947	ENSRBIG00000037403	R3HDM2	96	62.327	Rhinopithecus_bieti
ENSCVAG00000009058	r3hdm2	100	66.740	ENSRROG00000022271	R3HDM2	96	65.861	Rhinopithecus_roxellana
ENSCVAG00000009058	r3hdm2	100	66.887	ENSSBOG00000023547	R3HDM2	99	62.289	Saimiri_boliviensis_boliviensis
ENSCVAG00000009058	r3hdm2	99	63.309	ENSSHAG00000003511	R3HDM2	99	62.527	Sarcophilus_harrisii
ENSCVAG00000009058	r3hdm2	100	75.456	ENSSFOG00015011219	r3hdm2	99	76.008	Scleropages_formosus
ENSCVAG00000009058	r3hdm2	100	89.962	ENSSMAG00000012073	r3hdm2	100	89.867	Scophthalmus_maximus
ENSCVAG00000009058	r3hdm2	100	89.915	ENSSDUG00000019269	r3hdm2	100	90.132	Seriola_dumerili
ENSCVAG00000009058	r3hdm2	100	89.802	ENSSLDG00000005252	r3hdm2	100	90.301	Seriola_lalandi_dorsalis
ENSCVAG00000009058	r3hdm2	93	61.062	ENSSARG00000003958	R3HDM2	91	59.272	Sorex_araneus
ENSCVAG00000009058	r3hdm2	100	59.526	ENSSPUG00000014132	R3HDM2	99	58.665	Sphenodon_punctatus
ENSCVAG00000009058	r3hdm2	100	90.414	ENSSPAG00000022594	r3hdm2	100	90.977	Stegastes_partitus
ENSCVAG00000009058	r3hdm2	100	66.191	ENSSSCG00000026498	R3HDM2	100	64.929	Sus_scrofa
ENSCVAG00000009058	r3hdm2	70	65.000	ENSTGUG00000015881	R3HDM2	94	63.540	Taeniopygia_guttata
ENSCVAG00000009058	r3hdm2	100	86.799	ENSTRUG00000015075	r3hdm2	97	86.359	Takifugu_rubripes
ENSCVAG00000009058	r3hdm2	92	94.231	ENSTNIG00000007057	r3hdm2	90	94.231	Tetraodon_nigroviridis
ENSCVAG00000009058	r3hdm2	80	64.286	ENSTBEG00000015967	R3HDM2	76	63.946	Tupaia_belangeri
ENSCVAG00000009058	r3hdm2	93	70.276	ENSTTRG00000013082	R3HDM2	84	72.454	Tursiops_truncatus
ENSCVAG00000009058	r3hdm2	100	63.800	ENSUAMG00000020913	R3HDM2	99	64.393	Ursus_americanus
ENSCVAG00000009058	r3hdm2	97	66.247	ENSUMAG00000019179	R3HDM2	96	64.694	Ursus_maritimus
ENSCVAG00000009058	r3hdm2	91	83.417	ENSVPAG00000008656	R3HDM2	89	79.461	Vicugna_pacos
ENSCVAG00000009058	r3hdm2	93	67.037	ENSVVUG00000018014	R3HDM2	95	64.019	Vulpes_vulpes
ENSCVAG00000009058	r3hdm2	99	62.050	ENSXETG00000017153	r3hdm2	99	59.982	Xenopus_tropicalis
ENSCVAG00000009058	r3hdm2	93	92.118	ENSXCOG00000013882	r3hdm2	100	92.235	Xiphophorus_couchianus
ENSCVAG00000009058	r3hdm2	100	96.398	ENSXMAG00000017978	r3hdm2	100	96.272	Xiphophorus_maculatus