EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000009076 (Gene tree)
Gene ID: 107095572
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 31994 bases
Position: chrKL653057.1:226003-257996
Accession: 107095572
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000006891	Npa1	PF11707.8	6.5e-80	1	1
ENSCVAP00000024372	Npa1	PF11707.8	8.6e-80	1	1
ENSCVAP00000006733	Npa1	PF11707.8	1.2e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000004211	-	6192	XM_015391714	ENSCVAP00000006891	2063 (aa)	XP_015247200	-
ENSCVAT00000004487	-	5247	-	ENSCVAP00000006733	1748 (aa)	-	-
ENSCVAT00000004372	-	6138	-	ENSCVAP00000024372	2045 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000009076's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009076's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000009076	urb1	97	53.024	ENSG00000142207	URB1	96	51.937	Homo_sapiens
ENSCVAG00000009076	urb1	98	74.332	ENSAPOG00000020308	urb1	92	72.401	Acanthochromis_polyacanthus
ENSCVAG00000009076	urb1	96	55.709	ENSAMEG00000011998	URB1	96	55.709	Ailuropoda_melanoleuca
ENSCVAG00000009076	urb1	98	66.159	ENSACIG00000003248	urb1	94	64.762	Amphilophus_citrinellus
ENSCVAG00000009076	urb1	99	68.266	ENSAOCG00000010364	urb1	95	68.208	Amphiprion_ocellaris
ENSCVAG00000009076	urb1	99	69.868	ENSAPEG00000010758	urb1	95	69.468	Amphiprion_percula
ENSCVAG00000009076	urb1	98	70.492	ENSATEG00000011790	urb1	93	68.577	Anabas_testudineus
ENSCVAG00000009076	urb1	97	55.298	ENSAPLG00000012791	URB1	98	54.693	Anas_platyrhynchos
ENSCVAG00000009076	urb1	98	52.923	ENSACAG00000002817	URB1	92	52.653	Anolis_carolinensis
ENSCVAG00000009076	urb1	99	52.371	ENSANAG00000024617	URB1	97	52.132	Aotus_nancymaae
ENSCVAG00000009076	urb1	98	72.871	ENSACLG00000024865	urb1	94	70.947	Astatotilapia_calliptera
ENSCVAG00000009076	urb1	97	53.586	ENSAMXG00000012306	urb1	99	53.586	Astyanax_mexicanus
ENSCVAG00000009076	urb1	97	54.884	ENSBTAG00000012412	URB1	97	52.008	Bos_taurus
ENSCVAG00000009076	urb1	97	52.052	ENSCJAG00000009118	URB1	95	51.178	Callithrix_jacchus
ENSCVAG00000009076	urb1	99	52.371	ENSCAFG00000008892	URB1	91	55.017	Canis_familiaris
ENSCVAG00000009076	urb1	99	54.018	ENSCAFG00020025994	-	97	54.018	Canis_lupus_dingo
ENSCVAG00000009076	urb1	99	51.911	ENSCAFG00020025987	-	97	51.911	Canis_lupus_dingo
ENSCVAG00000009076	urb1	97	54.704	ENSCHIG00000015645	URB1	96	54.704	Capra_hircus
ENSCVAG00000009076	urb1	99	51.450	ENSTSYG00000013286	URB1	96	51.557	Carlito_syrichta
ENSCVAG00000009076	urb1	94	52.433	ENSCAPG00000015589	URB1	91	52.433	Cavia_aperea
ENSCVAG00000009076	urb1	96	54.817	ENSCPOG00000006748	URB1	89	54.817	Cavia_porcellus
ENSCVAG00000009076	urb1	95	55.201	ENSCCAG00000021299	URB1	96	52.137	Cebus_capucinus
ENSCVAG00000009076	urb1	97	55.660	ENSCATG00000042630	URB1	97	52.620	Cercocebus_atys
ENSCVAG00000009076	urb1	98	53.270	ENSCLAG00000005262	URB1	93	55.097	Chinchilla_lanigera
ENSCVAG00000009076	urb1	99	50.909	ENSCSAG00000009584	URB1	97	50.311	Chlorocebus_sabaeus
ENSCVAG00000009076	urb1	99	57.793	ENSCPBG00000006454	URB1	92	57.758	Chrysemys_picta_bellii
ENSCVAG00000009076	urb1	99	52.597	ENSCANG00000031088	URB1	97	51.937	Colobus_angolensis_palliatus
ENSCVAG00000009076	urb1	99	51.140	ENSCGRG00001010616	Urb1	99	44.656	Cricetulus_griseus_chok1gshd
ENSCVAG00000009076	urb1	98	51.663	ENSCGRG00000015840	Urb1	99	44.779	Cricetulus_griseus_crigri
ENSCVAG00000009076	urb1	98	70.345	ENSCSEG00000012616	urb1	93	68.790	Cynoglossus_semilaevis
ENSCVAG00000009076	urb1	99	56.921	ENSDARG00000060308	urb1	94	57.025	Danio_rerio
ENSCVAG00000009076	urb1	98	52.559	ENSDNOG00000015586	URB1	93	52.559	Dasypus_novemcinctus
ENSCVAG00000009076	urb1	98	52.654	ENSDORG00000006735	Urb1	98	44.754	Dipodomys_ordii
ENSCVAG00000009076	urb1	94	52.622	ENSETEG00000009080	URB1	82	53.484	Echinops_telfairi
ENSCVAG00000009076	urb1	97	54.767	ENSEASG00005007711	URB1	96	54.767	Equus_asinus_asinus
ENSCVAG00000009076	urb1	97	55.930	ENSECAG00000013206	URB1	96	55.930	Equus_caballus
ENSCVAG00000009076	urb1	98	57.248	ENSELUG00000020516	urb1	95	57.506	Esox_lucius
ENSCVAG00000009076	urb1	99	52.275	ENSFCAG00000002177	URB1	97	52.487	Felis_catus
ENSCVAG00000009076	urb1	87	55.066	ENSFALG00000004636	URB1	95	42.541	Ficedula_albicollis
ENSCVAG00000009076	urb1	96	55.057	ENSFDAG00000007288	URB1	88	55.097	Fukomys_damarensis
ENSCVAG00000009076	urb1	99	75.630	ENSFHEG00000000202	urb1	91	81.076	Fundulus_heteroclitus
ENSCVAG00000009076	urb1	93	59.096	ENSGMOG00000001838	urb1	91	59.096	Gadus_morhua
ENSCVAG00000009076	urb1	98	55.310	ENSGALG00000015887	URB1	96	54.622	Gallus_gallus
ENSCVAG00000009076	urb1	97	78.996	ENSGAFG00000020694	urb1	95	78.646	Gambusia_affinis
ENSCVAG00000009076	urb1	97	70.294	ENSGACG00000011703	urb1	93	69.130	Gasterosteus_aculeatus
ENSCVAG00000009076	urb1	99	57.727	ENSGAGG00000022544	URB1	92	57.727	Gopherus_agassizii
ENSCVAG00000009076	urb1	97	53.290	ENSGGOG00000000285	URB1	96	51.674	Gorilla_gorilla
ENSCVAG00000009076	urb1	98	73.376	ENSHBUG00000001904	urb1	93	71.429	Haplochromis_burtoni
ENSCVAG00000009076	urb1	99	51.434	ENSHGLG00000004907	URB1	92	52.941	Heterocephalus_glaber_female
ENSCVAG00000009076	urb1	99	53.171	ENSHGLG00100010749	URB1	92	54.879	Heterocephalus_glaber_male
ENSCVAG00000009076	urb1	89	62.998	ENSHCOG00000018683	urb1	94	63.232	Hippocampus_comes
ENSCVAG00000009076	urb1	99	54.535	ENSIPUG00000014721	urb1	93	51.868	Ictalurus_punctatus
ENSCVAG00000009076	urb1	98	52.865	ENSSTOG00000004539	URB1	97	51.933	Ictidomys_tridecemlineatus
ENSCVAG00000009076	urb1	98	74.893	ENSKMAG00000006001	urb1	97	76.056	Kryptolebias_marmoratus
ENSCVAG00000009076	urb1	98	64.362	ENSLBEG00000027208	urb1	95	65.235	Labrus_bergylta
ENSCVAG00000009076	urb1	99	50.616	ENSLACG00000017059	URB1	99	50.100	Latimeria_chalumnae
ENSCVAG00000009076	urb1	98	62.791	ENSLOCG00000009190	urb1	93	61.465	Lepisosteus_oculatus
ENSCVAG00000009076	urb1	98	52.737	ENSLAFG00000010407	URB1	93	51.949	Loxodonta_africana
ENSCVAG00000009076	urb1	99	52.489	ENSMFAG00000034391	URB1	93	52.248	Macaca_fascicularis
ENSCVAG00000009076	urb1	99	52.489	ENSMMUG00000010295	URB1	97	51.832	Macaca_mulatta
ENSCVAG00000009076	urb1	99	50.974	ENSMNEG00000032981	URB1	97	50.418	Macaca_nemestrina
ENSCVAG00000009076	urb1	99	52.814	ENSMLEG00000041435	URB1	97	52.147	Mandrillus_leucophaeus
ENSCVAG00000009076	urb1	98	66.667	ENSMAMG00000011238	urb1	95	64.597	Mastacembelus_armatus
ENSCVAG00000009076	urb1	99	67.668	ENSMZEG00005011862	urb1	93	67.308	Maylandia_zebra
ENSCVAG00000009076	urb1	97	55.773	ENSMGAG00000014512	URB1	96	54.902	Meleagris_gallopavo
ENSCVAG00000009076	urb1	88	52.799	ENSMAUG00000010516	Urb1	92	52.219	Mesocricetus_auratus
ENSCVAG00000009076	urb1	99	52.000	ENSMICG00000016424	URB1	93	51.667	Microcebus_murinus
ENSCVAG00000009076	urb1	98	51.190	ENSMOCG00000012613	Urb1	96	51.190	Microtus_ochrogaster
ENSCVAG00000009076	urb1	98	52.687	ENSMODG00000021076	URB1	95	52.211	Monodelphis_domestica
ENSCVAG00000009076	urb1	98	67.968	ENSMALG00000017411	urb1	99	62.781	Monopterus_albus
ENSCVAG00000009076	urb1	98	51.468	MGP_CAROLIEiJ_G0020948	Urb1	92	51.303	Mus_caroli
ENSCVAG00000009076	urb1	98	51.528	ENSMUSG00000039929	Urb1	92	52.328	Mus_musculus
ENSCVAG00000009076	urb1	98	51.954	MGP_PahariEiJ_G0016653	Urb1	98	45.000	Mus_pahari
ENSCVAG00000009076	urb1	98	51.949	MGP_SPRETEiJ_G0021854	Urb1	92	51.207	Mus_spretus
ENSCVAG00000009076	urb1	99	52.266	ENSMPUG00000001123	URB1	97	51.937	Mustela_putorius_furo
ENSCVAG00000009076	urb1	96	55.372	ENSNGAG00000001905	Urb1	91	55.372	Nannospalax_galili
ENSCVAG00000009076	urb1	87	65.035	ENSNBRG00000001049	urb1	95	67.308	Neolamprologus_brichardi
ENSCVAG00000009076	urb1	94	54.953	ENSNLEG00000026872	URB1	94	51.374	Nomascus_leucogenys
ENSCVAG00000009076	urb1	90	56.584	ENSMEUG00000010828	URB1	88	45.829	Notamacropus_eugenii
ENSCVAG00000009076	urb1	99	50.746	ENSOPRG00000013482	URB1	96	49.470	Ochotona_princeps
ENSCVAG00000009076	urb1	99	53.312	ENSODEG00000002587	URB1	94	44.970	Octodon_degus
ENSCVAG00000009076	urb1	98	73.053	ENSONIG00000005599	urb1	93	68.438	Oreochromis_niloticus
ENSCVAG00000009076	urb1	98	53.461	ENSOCUG00000009381	URB1	95	52.985	Oryctolagus_cuniculus
ENSCVAG00000009076	urb1	99	73.349	ENSORLG00000003429	urb1	92	73.349	Oryzias_latipes
ENSCVAG00000009076	urb1	99	73.465	ENSORLG00020013785	urb1	92	73.868	Oryzias_latipes_hni
ENSCVAG00000009076	urb1	99	71.882	ENSORLG00015019421	urb1	96	72.000	Oryzias_latipes_hsok
ENSCVAG00000009076	urb1	84	77.419	ENSOMEG00000002094	urb1	99	77.419	Oryzias_melastigma
ENSCVAG00000009076	urb1	98	51.848	ENSOGAG00000017140	URB1	96	51.420	Otolemur_garnettii
ENSCVAG00000009076	urb1	84	52.575	ENSOARG00000013679	URB1	80	46.154	Ovis_aries
ENSCVAG00000009076	urb1	97	53.182	ENSPPAG00000003423	URB1	96	51.674	Pan_paniscus
ENSCVAG00000009076	urb1	99	52.559	ENSPPRG00000023131	URB1	97	52.559	Panthera_pardus
ENSCVAG00000009076	urb1	96	52.505	ENSPTIG00000016125	URB1	82	52.155	Panthera_tigris_altaica
ENSCVAG00000009076	urb1	97	52.967	ENSPTRG00000013852	URB1	96	51.464	Pan_troglodytes
ENSCVAG00000009076	urb1	99	52.706	ENSPANG00000021964	URB1	97	52.042	Papio_anubis
ENSCVAG00000009076	urb1	98	51.937	ENSPKIG00000003683	urb1	95	51.828	Paramormyrops_kingsleyae
ENSCVAG00000009076	urb1	99	51.541	ENSPEMG00000021205	Urb1	96	51.541	Peromyscus_maniculatus_bairdii
ENSCVAG00000009076	urb1	88	33.861	ENSPMAG00000009733	URB1	95	34.036	Petromyzon_marinus
ENSCVAG00000009076	urb1	99	50.993	ENSPCIG00000016350	URB1	97	50.993	Phascolarctos_cinereus
ENSCVAG00000009076	urb1	96	82.733	ENSPLAG00000004371	urb1	93	82.733	Poecilia_latipinna
ENSCVAG00000009076	urb1	99	84.321	ENSPMEG00000006634	urb1	92	84.321	Poecilia_mexicana
ENSCVAG00000009076	urb1	99	82.782	ENSPREG00000013453	urb1	93	82.782	Poecilia_reticulata
ENSCVAG00000009076	urb1	98	52.979	ENSPPYG00000011359	URB1	96	52.147	Pongo_abelii
ENSCVAG00000009076	urb1	98	49.219	ENSPCAG00000007430	URB1	92	49.219	Procavia_capensis
ENSCVAG00000009076	urb1	96	54.809	ENSPCOG00000022695	URB1	93	51.613	Propithecus_coquereli
ENSCVAG00000009076	urb1	96	55.307	ENSPVAG00000000889	URB1	91	55.307	Pteropus_vampyrus
ENSCVAG00000009076	urb1	99	67.506	ENSPNYG00000010589	urb1	96	67.282	Pundamilia_nyererei
ENSCVAG00000009076	urb1	99	50.107	ENSPNAG00000019324	urb1	97	48.418	Pygocentrus_nattereri
ENSCVAG00000009076	urb1	98	51.586	ENSRNOG00000002080	Urb1	95	45.212	Rattus_norvegicus
ENSCVAG00000009076	urb1	97	52.489	ENSRBIG00000033122	URB1	96	51.832	Rhinopithecus_bieti
ENSCVAG00000009076	urb1	97	52.597	ENSRROG00000040237	URB1	96	51.937	Rhinopithecus_roxellana
ENSCVAG00000009076	urb1	99	52.478	ENSSBOG00000027672	URB1	97	52.239	Saimiri_boliviensis_boliviensis
ENSCVAG00000009076	urb1	99	50.984	ENSSHAG00000005140	URB1	97	50.984	Sarcophilus_harrisii
ENSCVAG00000009076	urb1	99	60.465	ENSSFOG00015000339	urb1	92	61.417	Scleropages_formosus
ENSCVAG00000009076	urb1	98	73.214	ENSSMAG00000003782	urb1	93	70.514	Scophthalmus_maximus
ENSCVAG00000009076	urb1	98	75.157	ENSSDUG00000012313	urb1	94	72.823	Seriola_dumerili
ENSCVAG00000009076	urb1	99	75.894	ENSSLDG00000023179	urb1	92	75.894	Seriola_lalandi_dorsalis
ENSCVAG00000009076	urb1	99	55.000	ENSSPUG00000012447	URB1	89	56.723	Sphenodon_punctatus
ENSCVAG00000009076	urb1	98	74.125	ENSSPAG00000006325	urb1	93	72.932	Stegastes_partitus
ENSCVAG00000009076	urb1	99	51.441	ENSSSCG00000032024	URB1	97	51.441	Sus_scrofa
ENSCVAG00000009076	urb1	88	53.216	ENSTGUG00000013442	URB1	97	53.216	Taeniopygia_guttata
ENSCVAG00000009076	urb1	98	69.050	ENSTRUG00000009372	urb1	93	67.447	Takifugu_rubripes
ENSCVAG00000009076	urb1	97	69.729	ENSTNIG00000016277	urb1	93	66.847	Tetraodon_nigroviridis
ENSCVAG00000009076	urb1	77	50.000	ENSTBEG00000010044	URB1	71	50.000	Tupaia_belangeri
ENSCVAG00000009076	urb1	88	50.335	ENSTTRG00000007712	URB1	84	50.335	Tursiops_truncatus
ENSCVAG00000009076	urb1	97	55.300	ENSUAMG00000012231	URB1	96	55.300	Ursus_americanus
ENSCVAG00000009076	urb1	96	53.863	ENSUMAG00000017419	URB1	81	56.092	Ursus_maritimus
ENSCVAG00000009076	urb1	69	65.278	ENSVPAG00000001164	URB1	64	65.278	Vicugna_pacos
ENSCVAG00000009076	urb1	99	53.786	ENSVVUG00000000551	URB1	97	54.765	Vulpes_vulpes
ENSCVAG00000009076	urb1	99	53.790	ENSXETG00000009895	urb1	93	53.452	Xenopus_tropicalis
ENSCVAG00000009076	urb1	98	78.366	ENSXCOG00000005500	urb1	99	71.796	Xiphophorus_couchianus
ENSCVAG00000009076	urb1	98	78.689	ENSXMAG00000007253	urb1	99	71.981	Xiphophorus_maculatus