EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000009078 (Gene tree)
Gene ID: 107087639
Gene Symbol: -
Alias: -
Full Name: DNA-directed RNA polymerase III subunit RPC4-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 7300 bases
Position: chrKL652689.1:114715-122014
Accession: 107087639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000007409	RNA_pol_Rpc4	PF05132.14	2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003342	-	3873	XM_015379317	ENSCVAP00000007409	344 (aa)	XP_015234803	UPI000742A117

Gene Model

Click here to download ENSCVAG00000009078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009078's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000009078	-	90	36.066	ENSCVAG00000020687	polr3d	90	36.695

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000009078	-	98	36.567	ENSG00000168495	POLR3D	99	37.313	Homo_sapiens
ENSCVAG00000009078	-	90	36.164	ENSAPOG00000012197	polr3d	91	36.034	Acanthochromis_polyacanthus
ENSCVAG00000009078	-	94	51.344	ENSAPOG00000017634	zgc:171971	90	52.151	Acanthochromis_polyacanthus
ENSCVAG00000009078	-	90	37.088	ENSAMEG00000003221	POLR3D	90	38.082	Ailuropoda_melanoleuca
ENSCVAG00000009078	-	94	49.041	ENSACIG00000003707	zgc:171971	91	49.864	Amphilophus_citrinellus
ENSCVAG00000009078	-	92	34.232	ENSACIG00000017832	polr3d	93	35.000	Amphilophus_citrinellus
ENSCVAG00000009078	-	90	36.441	ENSAOCG00000005037	polr3d	91	36.212	Amphiprion_ocellaris
ENSCVAG00000009078	-	94	52.432	ENSAOCG00000007733	zgc:171971	90	53.514	Amphiprion_ocellaris
ENSCVAG00000009078	-	94	52.432	ENSAPEG00000016107	zgc:171971	90	53.784	Amphiprion_percula
ENSCVAG00000009078	-	90	35.440	ENSAPEG00000013751	polr3d	91	35.933	Amphiprion_percula
ENSCVAG00000009078	-	94	50.975	ENSATEG00000023125	zgc:171971	91	50.975	Anabas_testudineus
ENSCVAG00000009078	-	90	35.754	ENSATEG00000023119	polr3d	91	36.313	Anabas_testudineus
ENSCVAG00000009078	-	84	34.402	ENSAPLG00000014393	POLR3D	99	33.819	Anas_platyrhynchos
ENSCVAG00000009078	-	79	33.639	ENSACAG00000010592	POLR3D	83	34.347	Anolis_carolinensis
ENSCVAG00000009078	-	98	36.318	ENSANAG00000030023	POLR3D	99	37.065	Aotus_nancymaae
ENSCVAG00000009078	-	95	54.596	ENSACLG00000000074	zgc:171971	92	55.556	Astatotilapia_calliptera
ENSCVAG00000009078	-	90	35.475	ENSACLG00000010147	polr3d	91	35.754	Astatotilapia_calliptera
ENSCVAG00000009078	-	90	37.940	ENSAMXG00000010079	polr3d	88	37.127	Astyanax_mexicanus
ENSCVAG00000009078	-	91	47.866	ENSAMXG00000019418	zgc:171971	89	47.706	Astyanax_mexicanus
ENSCVAG00000009078	-	90	38.630	ENSBTAG00000010036	POLR3D	90	38.630	Bos_taurus
ENSCVAG00000009078	-	98	37.065	ENSCJAG00000020278	POLR3D	92	37.811	Callithrix_jacchus
ENSCVAG00000009078	-	90	37.808	ENSCAFG00000009455	POLR3D	90	38.082	Canis_familiaris
ENSCVAG00000009078	-	90	37.808	ENSCAFG00020013027	POLR3D	90	38.082	Canis_lupus_dingo
ENSCVAG00000009078	-	90	36.986	ENSCHIG00000012279	POLR3D	90	37.534	Capra_hircus
ENSCVAG00000009078	-	90	36.986	ENSTSYG00000009055	POLR3D	90	37.534	Carlito_syrichta
ENSCVAG00000009078	-	83	35.465	ENSCAPG00000010394	POLR3D	97	36.047	Cavia_aperea
ENSCVAG00000009078	-	90	37.838	ENSCPOG00000003679	POLR3D	90	38.147	Cavia_porcellus
ENSCVAG00000009078	-	98	36.567	ENSCCAG00000019817	POLR3D	99	37.065	Cebus_capucinus
ENSCVAG00000009078	-	98	36.908	ENSCATG00000025950	POLR3D	99	37.656	Cercocebus_atys
ENSCVAG00000009078	-	90	37.602	ENSCLAG00000014993	POLR3D	90	38.147	Chinchilla_lanigera
ENSCVAG00000009078	-	98	36.908	ENSCSAG00000016525	POLR3D	99	37.656	Chlorocebus_sabaeus
ENSCVAG00000009078	-	66	64.103	ENSCHOG00000000228	POLR3D	56	64.103	Choloepus_hoffmanni
ENSCVAG00000009078	-	90	36.957	ENSCPBG00000001313	POLR3D	90	37.228	Chrysemys_picta_bellii
ENSCVAG00000009078	-	89	32.653	ENSCING00000008141	-	88	33.832	Ciona_intestinalis
ENSCVAG00000009078	-	89	33.721	ENSCSAVG00000007119	-	88	35.435	Ciona_savignyi
ENSCVAG00000009078	-	90	37.637	ENSCANG00000043589	POLR3D	90	38.187	Colobus_angolensis_palliatus
ENSCVAG00000009078	-	90	36.712	ENSCGRG00001010339	Polr3d	90	37.534	Cricetulus_griseus_chok1gshd
ENSCVAG00000009078	-	90	36.712	ENSCGRG00000003956	Polr3d	90	37.534	Cricetulus_griseus_crigri
ENSCVAG00000009078	-	93	52.923	ENSCSEG00000015509	zgc:171971	89	52.778	Cynoglossus_semilaevis
ENSCVAG00000009078	-	90	35.393	ENSCSEG00000008123	polr3d	90	35.674	Cynoglossus_semilaevis
ENSCVAG00000009078	-	91	43.266	ENSDARG00000042054	zgc:171971	88	42.980	Danio_rerio
ENSCVAG00000009078	-	97	34.646	ENSDARG00000104516	polr3d	91	37.255	Danio_rerio
ENSCVAG00000009078	-	90	36.986	ENSDNOG00000013488	POLR3D	90	37.534	Dasypus_novemcinctus
ENSCVAG00000009078	-	90	36.986	ENSDORG00000011174	Polr3d	90	37.808	Dipodomys_ordii
ENSCVAG00000009078	-	90	36.813	ENSETEG00000016516	POLR3D	90	37.260	Echinops_telfairi
ENSCVAG00000009078	-	70	33.016	ENSEBUG00000014414	polr3d	90	33.016	Eptatretus_burgeri
ENSCVAG00000009078	-	90	36.712	ENSEASG00005018824	POLR3D	90	37.260	Equus_asinus_asinus
ENSCVAG00000009078	-	90	37.808	ENSECAG00000025090	-	90	38.356	Equus_caballus
ENSCVAG00000009078	-	98	36.160	ENSEEUG00000007632	POLR3D	99	36.658	Erinaceus_europaeus
ENSCVAG00000009078	-	91	46.132	ENSELUG00000017642	zgc:171971	87	47.564	Esox_lucius
ENSCVAG00000009078	-	90	36.011	ENSELUG00000016978	polr3d	91	36.011	Esox_lucius
ENSCVAG00000009078	-	90	36.538	ENSFCAG00000005346	POLR3D	90	37.534	Felis_catus
ENSCVAG00000009078	-	84	35.260	ENSFALG00000010907	POLR3D	99	35.838	Ficedula_albicollis
ENSCVAG00000009078	-	90	37.057	ENSFDAG00000010144	POLR3D	90	38.147	Fukomys_damarensis
ENSCVAG00000009078	-	92	37.017	ENSFHEG00000000508	polr3d	92	37.017	Fundulus_heteroclitus
ENSCVAG00000009078	-	98	61.685	ENSFHEG00000003803	-	95	61.685	Fundulus_heteroclitus
ENSCVAG00000009078	-	89	35.097	ENSGMOG00000006293	polr3d	96	35.854	Gadus_morhua
ENSCVAG00000009078	-	93	48.598	ENSGMOG00000015819	zgc:171971	89	48.598	Gadus_morhua
ENSCVAG00000009078	-	85	38.372	ENSGALG00000032501	-	69	37.609	Gallus_gallus
ENSCVAG00000009078	-	91	36.339	ENSGAFG00000010268	polr3d	90	36.901	Gambusia_affinis
ENSCVAG00000009078	-	98	61.892	ENSGAFG00000009259	zgc:171971	96	61.892	Gambusia_affinis
ENSCVAG00000009078	-	94	48.670	ENSGACG00000015436	zgc:171971	92	49.202	Gasterosteus_aculeatus
ENSCVAG00000009078	-	90	36.667	ENSGACG00000011126	polr3d	91	37.604	Gasterosteus_aculeatus
ENSCVAG00000009078	-	90	36.585	ENSGAGG00000023229	POLR3D	90	36.856	Gopherus_agassizii
ENSCVAG00000009078	-	98	36.567	ENSGGOG00000007302	POLR3D	99	37.313	Gorilla_gorilla
ENSCVAG00000009078	-	90	35.475	ENSHBUG00000012288	polr3d	91	35.754	Haplochromis_burtoni
ENSCVAG00000009078	-	95	52.473	ENSHBUG00000020493	zgc:171971	96	56.135	Haplochromis_burtoni
ENSCVAG00000009078	-	98	37.594	ENSHGLG00000015415	POLR3D	99	38.095	Heterocephalus_glaber_female
ENSCVAG00000009078	-	98	37.594	ENSHGLG00100014950	POLR3D	99	38.095	Heterocephalus_glaber_male
ENSCVAG00000009078	-	89	35.511	ENSHCOG00000002228	polr3d	90	35.511	Hippocampus_comes
ENSCVAG00000009078	-	91	44.543	ENSHCOG00000018819	-	87	44.543	Hippocampus_comes
ENSCVAG00000009078	-	90	46.199	ENSIPUG00000008608	zgc:171971	88	45.614	Ictalurus_punctatus
ENSCVAG00000009078	-	90	36.119	ENSIPUG00000003480	polr3d	93	36.119	Ictalurus_punctatus
ENSCVAG00000009078	-	90	37.534	ENSSTOG00000016519	POLR3D	90	38.082	Ictidomys_tridecemlineatus
ENSCVAG00000009078	-	90	37.534	ENSJJAG00000006743	Polr3d	90	38.356	Jaculus_jaculus
ENSCVAG00000009078	-	90	37.047	ENSKMAG00000005145	polr3d	91	36.667	Kryptolebias_marmoratus
ENSCVAG00000009078	-	93	53.889	ENSLBEG00000009545	zgc:171971	90	53.889	Labrus_bergylta
ENSCVAG00000009078	-	90	34.454	ENSLBEG00000003430	polr3d	91	35.014	Labrus_bergylta
ENSCVAG00000009078	-	90	37.500	ENSLACG00000016654	POLR3D	90	38.420	Latimeria_chalumnae
ENSCVAG00000009078	-	90	42.899	ENSLOCG00000006467	zgc:171971	95	41.304	Lepisosteus_oculatus
ENSCVAG00000009078	-	90	37.500	ENSLOCG00000016080	polr3d	92	37.500	Lepisosteus_oculatus
ENSCVAG00000009078	-	90	36.986	ENSLAFG00000001562	POLR3D	90	37.808	Loxodonta_africana
ENSCVAG00000009078	-	98	36.908	ENSMFAG00000029141	POLR3D	99	37.656	Macaca_fascicularis
ENSCVAG00000009078	-	98	36.908	ENSMMUG00000023226	POLR3D	99	37.656	Macaca_mulatta
ENSCVAG00000009078	-	98	36.908	ENSMNEG00000039410	POLR3D	99	37.656	Macaca_nemestrina
ENSCVAG00000009078	-	98	36.908	ENSMLEG00000031413	POLR3D	99	37.656	Mandrillus_leucophaeus
ENSCVAG00000009078	-	90	36.544	ENSMAMG00000008914	polr3d	91	36.544	Mastacembelus_armatus
ENSCVAG00000009078	-	94	49.451	ENSMAMG00000020617	zgc:171971	92	49.448	Mastacembelus_armatus
ENSCVAG00000009078	-	90	35.475	ENSMZEG00005011442	polr3d	91	35.754	Maylandia_zebra
ENSCVAG00000009078	-	95	54.596	ENSMZEG00005003175	zgc:171971	92	55.556	Maylandia_zebra
ENSCVAG00000009078	-	90	36.986	ENSMAUG00000006844	Polr3d	90	37.534	Mesocricetus_auratus
ENSCVAG00000009078	-	90	37.260	ENSMICG00000001049	POLR3D	90	37.808	Microcebus_murinus
ENSCVAG00000009078	-	90	35.989	ENSMOCG00000005195	Polr3d	90	37.808	Microtus_ochrogaster
ENSCVAG00000009078	-	90	35.795	ENSMMOG00000013845	polr3d	90	36.080	Mola_mola
ENSCVAG00000009078	-	87	37.640	ENSMODG00000009491	POLR3D	91	37.921	Monodelphis_domestica
ENSCVAG00000009078	-	94	48.619	ENSMALG00000005659	zgc:171971	91	50.000	Monopterus_albus
ENSCVAG00000009078	-	90	36.034	ENSMALG00000002928	polr3d	90	36.034	Monopterus_albus
ENSCVAG00000009078	-	90	36.986	MGP_CAROLIEiJ_G0019481	Polr3d	90	37.808	Mus_caroli
ENSCVAG00000009078	-	90	36.986	ENSMUSG00000000776	Polr3d	90	37.808	Mus_musculus
ENSCVAG00000009078	-	90	35.040	MGP_PahariEiJ_G0030498	Polr3d	90	36.438	Mus_pahari
ENSCVAG00000009078	-	90	37.260	MGP_SPRETEiJ_G0020373	Polr3d	90	38.082	Mus_spretus
ENSCVAG00000009078	-	90	36.538	ENSMPUG00000003653	POLR3D	90	37.534	Mustela_putorius_furo
ENSCVAG00000009078	-	90	36.712	ENSMLUG00000002109	POLR3D	90	37.534	Myotis_lucifugus
ENSCVAG00000009078	-	90	37.534	ENSNGAG00000013872	Polr3d	90	38.356	Nannospalax_galili
ENSCVAG00000009078	-	90	35.262	ENSNBRG00000019106	polr3d	91	35.854	Neolamprologus_brichardi
ENSCVAG00000009078	-	82	48.667	ENSNBRG00000022951	zgc:171971	84	49.333	Neolamprologus_brichardi
ENSCVAG00000009078	-	90	39.237	ENSMEUG00000000465	POLR3D	90	38.965	Notamacropus_eugenii
ENSCVAG00000009078	-	90	37.534	ENSOPRG00000013146	POLR3D	90	38.356	Ochotona_princeps
ENSCVAG00000009078	-	90	38.172	ENSODEG00000005884	POLR3D	91	39.247	Octodon_degus
ENSCVAG00000009078	-	90	35.933	ENSONIG00000010634	polr3d	91	35.754	Oreochromis_niloticus
ENSCVAG00000009078	-	94	55.278	ENSONIG00000007280	zgc:171971	92	55.833	Oreochromis_niloticus
ENSCVAG00000009078	-	90	38.420	ENSOCUG00000017410	POLR3D	90	39.674	Oryctolagus_cuniculus
ENSCVAG00000009078	-	90	35.955	ENSORLG00000011583	polr3d	92	36.517	Oryzias_latipes
ENSCVAG00000009078	-	90	36.212	ENSORLG00020005668	polr3d	90	36.769	Oryzias_latipes_hni
ENSCVAG00000009078	-	90	35.933	ENSORLG00015020291	polr3d	90	35.933	Oryzias_latipes_hsok
ENSCVAG00000009078	-	90	36.314	ENSOMEG00000010120	polr3d	90	37.535	Oryzias_melastigma
ENSCVAG00000009078	-	90	37.330	ENSOGAG00000004912	POLR3D	90	38.187	Otolemur_garnettii
ENSCVAG00000009078	-	91	37.027	ENSOARG00000010372	-	73	37.568	Ovis_aries
ENSCVAG00000009078	-	98	36.567	ENSPPAG00000029591	POLR3D	99	37.313	Pan_paniscus
ENSCVAG00000009078	-	90	36.538	ENSPPRG00000022827	POLR3D	90	37.534	Panthera_pardus
ENSCVAG00000009078	-	90	36.538	ENSPTIG00000018239	POLR3D	90	37.534	Panthera_tigris_altaica
ENSCVAG00000009078	-	98	36.567	ENSPTRG00000020056	POLR3D	99	37.313	Pan_troglodytes
ENSCVAG00000009078	-	98	36.908	ENSPANG00000009440	POLR3D	99	37.656	Papio_anubis
ENSCVAG00000009078	-	89	32.698	ENSPKIG00000006727	polr3d	90	32.787	Paramormyrops_kingsleyae
ENSCVAG00000009078	-	91	45.714	ENSPKIG00000025283	zgc:171971	87	45.714	Paramormyrops_kingsleyae
ENSCVAG00000009078	-	90	35.580	ENSPSIG00000006113	POLR3D	90	35.849	Pelodiscus_sinensis
ENSCVAG00000009078	-	90	35.569	ENSPMGG00000021658	polr3d	91	35.411	Periophthalmus_magnuspinnatus
ENSCVAG00000009078	-	90	37.808	ENSPEMG00000023314	Polr3d	90	38.082	Peromyscus_maniculatus_bairdii
ENSCVAG00000009078	-	95	33.086	ENSPMAG00000001455	polr3d	90	33.854	Petromyzon_marinus
ENSCVAG00000009078	-	90	38.356	ENSPCIG00000012699	POLR3D	90	38.630	Phascolarctos_cinereus
ENSCVAG00000009078	-	98	61.622	ENSPFOG00000011089	zgc:171971	96	61.622	Poecilia_formosa
ENSCVAG00000009078	-	91	35.833	ENSPFOG00000012698	polr3d	90	37.183	Poecilia_formosa
ENSCVAG00000009078	-	91	35.556	ENSPLAG00000008149	polr3d	90	36.901	Poecilia_latipinna
ENSCVAG00000009078	-	97	53.803	ENSPLAG00000003645	zgc:171971	92	53.803	Poecilia_latipinna
ENSCVAG00000009078	-	98	61.622	ENSPMEG00000016953	zgc:171971	96	61.622	Poecilia_mexicana
ENSCVAG00000009078	-	91	36.288	ENSPMEG00000002702	polr3d	90	37.079	Poecilia_mexicana
ENSCVAG00000009078	-	98	60.811	ENSPREG00000003755	-	96	60.811	Poecilia_reticulata
ENSCVAG00000009078	-	89	36.338	ENSPREG00000007593	polr3d	89	36.901	Poecilia_reticulata
ENSCVAG00000009078	-	98	36.567	ENSPPYG00000018419	POLR3D	99	37.313	Pongo_abelii
ENSCVAG00000009078	-	90	35.616	ENSPCAG00000001971	POLR3D	90	36.438	Procavia_capensis
ENSCVAG00000009078	-	90	37.808	ENSPCOG00000028134	POLR3D	90	38.356	Propithecus_coquereli
ENSCVAG00000009078	-	90	35.616	ENSPVAG00000009873	POLR3D	90	35.989	Pteropus_vampyrus
ENSCVAG00000009078	-	90	35.196	ENSPNYG00000016306	polr3d	91	35.475	Pundamilia_nyererei
ENSCVAG00000009078	-	82	49.533	ENSPNYG00000008902	zgc:171971	83	50.621	Pundamilia_nyererei
ENSCVAG00000009078	-	90	36.240	ENSPNAG00000022324	polr3d	90	35.967	Pygocentrus_nattereri
ENSCVAG00000009078	-	93	46.067	ENSPNAG00000018934	zgc:171971	91	44.818	Pygocentrus_nattereri
ENSCVAG00000009078	-	90	36.712	ENSRNOG00000010028	Polr3d	90	37.534	Rattus_norvegicus
ENSCVAG00000009078	-	98	36.908	ENSRBIG00000035406	POLR3D	99	37.406	Rhinopithecus_bieti
ENSCVAG00000009078	-	98	36.908	ENSRROG00000037278	POLR3D	99	37.406	Rhinopithecus_roxellana
ENSCVAG00000009078	-	98	36.567	ENSSBOG00000024956	POLR3D	99	37.065	Saimiri_boliviensis_boliviensis
ENSCVAG00000009078	-	84	37.719	ENSSHAG00000018257	POLR3D	99	38.012	Sarcophilus_harrisii
ENSCVAG00000009078	-	90	35.967	ENSSFOG00015010611	polr3d	89	36.066	Scleropages_formosus
ENSCVAG00000009078	-	84	44.000	ENSSFOG00015011547	zgc:171971	91	43.519	Scleropages_formosus
ENSCVAG00000009078	-	93	53.631	ENSSMAG00000001465	zgc:171971	90	53.631	Scophthalmus_maximus
ENSCVAG00000009078	-	90	35.775	ENSSMAG00000006271	polr3d	91	36.034	Scophthalmus_maximus
ENSCVAG00000009078	-	90	36.695	ENSSDUG00000020718	polr3d	90	37.079	Seriola_dumerili
ENSCVAG00000009078	-	93	53.005	ENSSDUG00000016019	zgc:171971	90	52.459	Seriola_dumerili
ENSCVAG00000009078	-	93	53.279	ENSSLDG00000015968	zgc:171971	90	52.732	Seriola_lalandi_dorsalis
ENSCVAG00000009078	-	90	36.975	ENSSLDG00000009643	polr3d	90	37.079	Seriola_lalandi_dorsalis
ENSCVAG00000009078	-	90	35.068	ENSSARG00000012844	POLR3D	90	36.164	Sorex_araneus
ENSCVAG00000009078	-	90	36.164	ENSSPUG00000000719	POLR3D	90	36.438	Sphenodon_punctatus
ENSCVAG00000009078	-	94	50.423	ENSSPAG00000010384	zgc:171971	93	51.183	Stegastes_partitus
ENSCVAG00000009078	-	90	37.326	ENSSPAG00000023326	polr3d	91	37.047	Stegastes_partitus
ENSCVAG00000009078	-	90	38.043	ENSSSCG00000009622	POLR3D	90	39.402	Sus_scrofa
ENSCVAG00000009078	-	90	35.342	ENSTRUG00000003555	polr3d	91	36.415	Takifugu_rubripes
ENSCVAG00000009078	-	90	36.490	ENSTNIG00000006282	polr3d	91	36.490	Tetraodon_nigroviridis
ENSCVAG00000009078	-	98	35.162	ENSTTRG00000012745	POLR3D	99	36.070	Tursiops_truncatus
ENSCVAG00000009078	-	79	34.251	ENSUAMG00000026868	POLR3D	87	35.366	Ursus_americanus
ENSCVAG00000009078	-	90	37.088	ENSUMAG00000005099	POLR3D	90	38.082	Ursus_maritimus
ENSCVAG00000009078	-	90	37.808	ENSVVUG00000005290	POLR3D	90	38.082	Vulpes_vulpes
ENSCVAG00000009078	-	90	37.260	ENSXETG00000010534	polr3d	91	37.260	Xenopus_tropicalis
ENSCVAG00000009078	-	89	37.685	ENSXCOG00000015872	polr3d	90	38.279	Xiphophorus_couchianus
ENSCVAG00000009078	-	89	36.011	ENSXMAG00000001872	polr3d	90	36.798	Xiphophorus_maculatus
ENSCVAG00000009078	-	98	63.243	ENSXMAG00000014555	-	96	63.243	Xiphophorus_maculatus