EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000009142 (Gene tree)
Gene ID: 107095573
Gene Symbol: scaf4b
Alias: im:6900467|si:ch211-245g11.2
Full Name: splicing factor%2C arginine/serine-rich 15-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 41053 bases
Position: chrKL653057.1:183141-224193
Accession: 107095573
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000024811	RRM_1	PF00076.22	8.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003242	-	3036	XM_015391716	ENSCVAP00000024811	755 (aa)	XP_015247202	UPI000742B6FE

Gene Model

Click here to download ENSCVAG00000009142's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009142's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000009142	scaf4b	100	70.712	ENSAPOG00000019615	scaf4b	100	70.976	Acanthochromis_polyacanthus
ENSCVAG00000009142	scaf4b	100	72.032	ENSAOCG00000010433	scaf4b	100	72.032	Amphiprion_ocellaris
ENSCVAG00000009142	scaf4b	100	71.900	ENSAPEG00000010913	scaf4b	100	71.900	Amphiprion_percula
ENSCVAG00000009142	scaf4b	98	63.515	ENSATEG00000011758	scaf4b	100	64.847	Anabas_testudineus
ENSCVAG00000009142	scaf4b	100	69.353	ENSACLG00000024833	scaf4b	100	69.565	Astatotilapia_calliptera
ENSCVAG00000009142	scaf4b	71	58.545	ENSAMXG00000008585	scaf4a	64	58.545	Astyanax_mexicanus
ENSCVAG00000009142	scaf4b	55	71.519	ENSCJAG00000008993	SCAF4	58	61.502	Callithrix_jacchus
ENSCVAG00000009142	scaf4b	53	72.152	ENSCAFG00020026019	SCAF4	57	61.749	Canis_lupus_dingo
ENSCVAG00000009142	scaf4b	100	57.642	ENSCSEG00000012808	-	99	58.399	Cynoglossus_semilaevis
ENSCVAG00000009142	scaf4b	54	67.974	ENSDARG00000018854	scaf4b	70	56.537	Danio_rerio
ENSCVAG00000009142	scaf4b	61	48.944	ENSEBUG00000003891	SCAF8	60	54.007	Eptatretus_burgeri
ENSCVAG00000009142	scaf4b	100	80.079	ENSFHEG00000007634	scaf4b	100	80.871	Fundulus_heteroclitus
ENSCVAG00000009142	scaf4b	52	71.429	ENSGMOG00000015188	scaf4a	54	59.690	Gadus_morhua
ENSCVAG00000009142	scaf4b	53	70.139	ENSGACG00000020580	scaf4a	51	56.000	Gasterosteus_aculeatus
ENSCVAG00000009142	scaf4b	54	73.718	ENSJJAG00000019447	Scaf4	56	60.633	Jaculus_jaculus
ENSCVAG00000009142	scaf4b	100	72.691	ENSKMAG00000005742	scaf4b	100	72.691	Kryptolebias_marmoratus
ENSCVAG00000009142	scaf4b	52	70.922	ENSMALG00000013825	scaf4a	65	49.235	Monopterus_albus
ENSCVAG00000009142	scaf4b	56	88.462	ENSONIG00000005610	scaf4b	73	88.387	Oreochromis_niloticus
ENSCVAG00000009142	scaf4b	52	72.535	ENSONIG00000004687	scaf4a	50	55.957	Oreochromis_niloticus
ENSCVAG00000009142	scaf4b	100	63.228	ENSORLG00000003420	scaf4b	100	63.228	Oryzias_latipes
ENSCVAG00000009142	scaf4b	100	63.408	ENSORLG00020013853	scaf4b	100	63.408	Oryzias_latipes_hni
ENSCVAG00000009142	scaf4b	58	63.212	ENSPKIG00000022408	scaf4a	72	60.364	Paramormyrops_kingsleyae
ENSCVAG00000009142	scaf4b	52	58.993	ENSPMAG00000006192	SCAF8	60	58.170	Petromyzon_marinus
ENSCVAG00000009142	scaf4b	53	72.727	ENSPFOG00000017156	scaf4a	55	55.197	Poecilia_formosa
ENSCVAG00000009142	scaf4b	91	74.815	ENSPFOG00000003261	scaf4b	79	74.815	Poecilia_formosa
ENSCVAG00000009142	scaf4b	100	73.544	ENSPLAG00000004403	-	100	73.544	Poecilia_latipinna
ENSCVAG00000009142	scaf4b	58	75.540	ENSPLAG00000001972	scaf4a	69	55.510	Poecilia_latipinna
ENSCVAG00000009142	scaf4b	100	73.544	ENSPMEG00000006666	-	100	73.544	Poecilia_mexicana
ENSCVAG00000009142	scaf4b	100	73.325	ENSPREG00000013510	scaf4b	100	73.198	Poecilia_reticulata
ENSCVAG00000009142	scaf4b	100	69.485	ENSPNYG00000010526	scaf4b	100	69.697	Pundamilia_nyererei
ENSCVAG00000009142	scaf4b	77	54.848	ENSPNAG00000016892	scaf4a	64	54.848	Pygocentrus_nattereri
ENSCVAG00000009142	scaf4b	100	55.508	ENSPNAG00000015199	-	90	55.508	Pygocentrus_nattereri
ENSCVAG00000009142	scaf4b	100	68.235	ENSSMAG00000003738	scaf4b	100	68.235	Scophthalmus_maximus
ENSCVAG00000009142	scaf4b	100	67.843	ENSSDUG00000012380	scaf4b	100	68.758	Seriola_dumerili
ENSCVAG00000009142	scaf4b	100	67.843	ENSSLDG00000023152	-	100	68.758	Seriola_lalandi_dorsalis
ENSCVAG00000009142	scaf4b	100	57.616	ENSTRUG00000009536	-	100	57.616	Takifugu_rubripes