EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000009200 (Gene tree)
Gene ID: 107082334
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 14177 bases
Position: chrKL652502.1:2893535-2907711
Accession: 107082334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000007498	ResIII	PF04851.15	6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003195	-	2616	XM_015370955	ENSCVAP00000007498	871 (aa)	XP_015226441	-

Gene Model

Click here to download ENSCVAG00000009200's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009200's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000009200	rad54b	61	33.394	ENSCVAG00000008090	ercc6l	77	33.394
ENSCVAG00000009200	rad54b	66	30.221	ENSCVAG00000008668	smarca5	52	30.221
ENSCVAG00000009200	rad54b	60	46.850	ENSCVAG00000019561	rad54l	91	46.850

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000009200	rad54b	99	56.100	ENSG00000197275	RAD54B	99	56.100	Homo_sapiens
ENSCVAG00000009200	rad54b	82	60.246	ENSG00000265817	FSBP	99	60.246	Homo_sapiens
ENSCVAG00000009200	rad54b	99	56.446	ENSAMEG00000005834	-	99	56.446	Ailuropoda_melanoleuca
ENSCVAG00000009200	rad54b	100	81.591	ENSACIG00000013005	rad54b	100	81.591	Amphilophus_citrinellus
ENSCVAG00000009200	rad54b	100	78.710	ENSAOCG00000008523	rad54b	100	78.710	Amphiprion_ocellaris
ENSCVAG00000009200	rad54b	100	78.668	ENSAPEG00000001673	rad54b	100	78.668	Amphiprion_percula
ENSCVAG00000009200	rad54b	100	81.050	ENSATEG00000001527	rad54b	100	81.050	Anabas_testudineus
ENSCVAG00000009200	rad54b	99	59.368	ENSAPLG00000014366	-	99	59.368	Anas_platyrhynchos
ENSCVAG00000009200	rad54b	89	62.563	ENSACAG00000003671	-	98	62.563	Anolis_carolinensis
ENSCVAG00000009200	rad54b	73	61.669	ENSANAG00000019528	-	99	61.669	Aotus_nancymaae
ENSCVAG00000009200	rad54b	100	81.342	ENSACLG00000007826	rad54b	100	81.342	Astatotilapia_calliptera
ENSCVAG00000009200	rad54b	89	68.361	ENSAMXG00000039985	rad54b	94	68.056	Astyanax_mexicanus
ENSCVAG00000009200	rad54b	99	56.739	ENSBTAG00000000632	RAD54B	99	56.739	Bos_taurus
ENSCVAG00000009200	rad54b	81	36.856	WBGene00013792	Y116A8C.13	82	36.892	Caenorhabditis_elegans
ENSCVAG00000009200	rad54b	99	56.148	ENSCJAG00000000080	-	99	60.192	Callithrix_jacchus
ENSCVAG00000009200	rad54b	99	57.530	ENSCAFG00000009179	RAD54B	99	57.746	Canis_familiaris
ENSCVAG00000009200	rad54b	99	57.746	ENSCAFG00020012084	-	99	57.746	Canis_lupus_dingo
ENSCVAG00000009200	rad54b	99	56.987	ENSCHIG00000008230	-	99	56.987	Capra_hircus
ENSCVAG00000009200	rad54b	99	56.692	ENSTSYG00000013234	-	99	56.692	Carlito_syrichta
ENSCVAG00000009200	rad54b	99	57.018	ENSCPOG00000011643	-	99	57.018	Cavia_porcellus
ENSCVAG00000009200	rad54b	99	56.366	ENSCCAG00000011754	-	99	60.164	Cebus_capucinus
ENSCVAG00000009200	rad54b	99	55.786	ENSCATG00000030661	-	99	60.274	Cercocebus_atys
ENSCVAG00000009200	rad54b	99	57.559	ENSCLAG00000010476	-	99	57.559	Chinchilla_lanigera
ENSCVAG00000009200	rad54b	99	55.895	ENSCSAG00000012712	-	99	55.895	Chlorocebus_sabaeus
ENSCVAG00000009200	rad54b	99	58.747	ENSCPBG00000003204	-	98	60.613	Chrysemys_picta_bellii
ENSCVAG00000009200	rad54b	99	55.943	ENSCANG00000017939	-	99	60.274	Colobus_angolensis_palliatus
ENSCVAG00000009200	rad54b	99	57.127	ENSCGRG00001020184	Rad54b	99	57.127	Cricetulus_griseus_chok1gshd
ENSCVAG00000009200	rad54b	99	55.580	ENSCGRG00000016752	Rad54b	99	55.580	Cricetulus_griseus_crigri
ENSCVAG00000009200	rad54b	99	77.408	ENSCSEG00000001601	rad54b	99	77.408	Cynoglossus_semilaevis
ENSCVAG00000009200	rad54b	99	63.678	ENSDARG00000092134	rad54b	99	69.014	Danio_rerio
ENSCVAG00000009200	rad54b	99	56.925	ENSDNOG00000015535	-	99	56.925	Dasypus_novemcinctus
ENSCVAG00000009200	rad54b	99	57.978	ENSDORG00000002492	Rad54b	99	58.054	Dipodomys_ordii
ENSCVAG00000009200	rad54b	87	59.097	ENSETEG00000010605	-	100	59.097	Echinops_telfairi
ENSCVAG00000009200	rad54b	99	47.784	ENSEBUG00000009104	rad54b	98	47.784	Eptatretus_burgeri
ENSCVAG00000009200	rad54b	89	60.530	ENSEASG00005004021	-	88	60.530	Equus_asinus_asinus
ENSCVAG00000009200	rad54b	99	56.196	ENSECAG00000021949	-	98	56.196	Equus_caballus
ENSCVAG00000009200	rad54b	73	54.545	ENSEEUG00000008056	-	71	54.545	Erinaceus_europaeus
ENSCVAG00000009200	rad54b	100	70.085	ENSELUG00000009287	rad54b	100	70.085	Esox_lucius
ENSCVAG00000009200	rad54b	99	56.941	ENSFCAG00000015513	-	99	61.339	Felis_catus
ENSCVAG00000009200	rad54b	99	58.342	ENSFALG00000005467	-	99	58.342	Ficedula_albicollis
ENSCVAG00000009200	rad54b	99	55.987	ENSFDAG00000020541	-	100	56.095	Fukomys_damarensis
ENSCVAG00000009200	rad54b	93	86.258	ENSFHEG00000014382	rad54b	90	86.258	Fundulus_heteroclitus
ENSCVAG00000009200	rad54b	89	78.491	ENSGMOG00000014774	rad54b	99	78.491	Gadus_morhua
ENSCVAG00000009200	rad54b	99	58.824	ENSGALG00000043597	RAD54B	99	58.824	Gallus_gallus
ENSCVAG00000009200	rad54b	99	86.997	ENSGAFG00000007901	rad54b	99	86.997	Gambusia_affinis
ENSCVAG00000009200	rad54b	99	75.922	ENSGACG00000009128	rad54b	99	75.922	Gasterosteus_aculeatus
ENSCVAG00000009200	rad54b	99	58.595	ENSGAGG00000018747	-	99	58.595	Gopherus_agassizii
ENSCVAG00000009200	rad54b	99	56.284	ENSGGOG00000023516	-	99	56.284	Gorilla_gorilla
ENSCVAG00000009200	rad54b	100	77.849	ENSHBUG00000016017	rad54b	99	77.849	Haplochromis_burtoni
ENSCVAG00000009200	rad54b	99	55.759	ENSHGLG00000008263	RAD54B	99	55.759	Heterocephalus_glaber_female
ENSCVAG00000009200	rad54b	99	55.080	ENSHGLG00100008108	-	99	55.080	Heterocephalus_glaber_male
ENSCVAG00000009200	rad54b	99	71.826	ENSHCOG00000004764	rad54b	98	74.593	Hippocampus_comes
ENSCVAG00000009200	rad54b	99	61.040	ENSIPUG00000018531	rad54b	99	61.040	Ictalurus_punctatus
ENSCVAG00000009200	rad54b	99	55.969	ENSSTOG00000010791	-	99	55.969	Ictidomys_tridecemlineatus
ENSCVAG00000009200	rad54b	99	54.957	ENSJJAG00000010314	Rad54b	99	54.957	Jaculus_jaculus
ENSCVAG00000009200	rad54b	100	77.159	ENSKMAG00000004744	rad54b	100	77.159	Kryptolebias_marmoratus
ENSCVAG00000009200	rad54b	85	63.793	ENSLACG00000000859	-	100	63.793	Latimeria_chalumnae
ENSCVAG00000009200	rad54b	99	63.305	ENSLOCG00000010100	rad54b	93	69.849	Lepisosteus_oculatus
ENSCVAG00000009200	rad54b	89	59.446	ENSLAFG00000015315	-	97	59.446	Loxodonta_africana
ENSCVAG00000009200	rad54b	99	56.004	ENSMFAG00000031629	-	99	60.274	Macaca_fascicularis
ENSCVAG00000009200	rad54b	99	56.004	ENSMMUG00000005659	-	99	56.004	Macaca_mulatta
ENSCVAG00000009200	rad54b	99	55.956	ENSMNEG00000016408	-	99	55.956	Macaca_nemestrina
ENSCVAG00000009200	rad54b	99	56.004	ENSMLEG00000006946	-	99	56.004	Mandrillus_leucophaeus
ENSCVAG00000009200	rad54b	100	79.819	ENSMAMG00000012269	rad54b	99	79.819	Mastacembelus_armatus
ENSCVAG00000009200	rad54b	100	77.849	ENSMZEG00005005281	rad54b	97	84.663	Maylandia_zebra
ENSCVAG00000009200	rad54b	99	58.388	ENSMGAG00000012024	-	99	58.170	Meleagris_gallopavo
ENSCVAG00000009200	rad54b	99	56.410	ENSMAUG00000013586	Rad54b	99	56.181	Mesocricetus_auratus
ENSCVAG00000009200	rad54b	99	57.062	ENSMICG00000000754	-	99	57.062	Microcebus_murinus
ENSCVAG00000009200	rad54b	99	56.604	ENSMOCG00000020035	Rad54b	99	56.682	Microtus_ochrogaster
ENSCVAG00000009200	rad54b	99	77.753	ENSMMOG00000003394	rad54b	99	77.753	Mola_mola
ENSCVAG00000009200	rad54b	89	60.530	ENSMODG00000007343	-	97	60.530	Monodelphis_domestica
ENSCVAG00000009200	rad54b	72	83.912	ENSMALG00000001520	rad54b	100	83.912	Monopterus_albus
ENSCVAG00000009200	rad54b	99	56.637	MGP_CAROLIEiJ_G0025810	Rad54b	99	56.637	Mus_caroli
ENSCVAG00000009200	rad54b	99	56.208	ENSMUSG00000078773	Rad54b	99	56.208	Mus_musculus
ENSCVAG00000009200	rad54b	99	56.937	MGP_PahariEiJ_G0023933	Rad54b	99	56.826	Mus_pahari
ENSCVAG00000009200	rad54b	99	56.763	MGP_SPRETEiJ_G0026758	Rad54b	99	56.763	Mus_spretus
ENSCVAG00000009200	rad54b	89	60.831	ENSMPUG00000008878	-	97	60.831	Mustela_putorius_furo
ENSCVAG00000009200	rad54b	99	56.798	ENSMLUG00000008953	-	99	56.798	Myotis_lucifugus
ENSCVAG00000009200	rad54b	99	55.870	ENSNGAG00000017537	Rad54b	99	55.870	Nannospalax_galili
ENSCVAG00000009200	rad54b	100	81.570	ENSNBRG00000013394	rad54b	100	81.570	Neolamprologus_brichardi
ENSCVAG00000009200	rad54b	99	55.882	ENSNLEG00000003062	-	99	60.109	Nomascus_leucogenys
ENSCVAG00000009200	rad54b	72	63.939	ENSMEUG00000012426	-	69	63.939	Notamacropus_eugenii
ENSCVAG00000009200	rad54b	99	56.925	ENSODEG00000019564	-	99	56.925	Octodon_degus
ENSCVAG00000009200	rad54b	79	79.545	ENSODEG00000002650	-	93	78.261	Octodon_degus
ENSCVAG00000009200	rad54b	100	79.431	ENSONIG00000006067	rad54b	100	79.431	Oreochromis_niloticus
ENSCVAG00000009200	rad54b	85	61.206	ENSOANG00000011348	-	99	61.206	Ornithorhynchus_anatinus
ENSCVAG00000009200	rad54b	99	56.366	ENSOCUG00000016478	-	99	56.366	Oryctolagus_cuniculus
ENSCVAG00000009200	rad54b	100	75.932	ENSORLG00000008918	rad54b	100	84.341	Oryzias_latipes
ENSCVAG00000009200	rad54b	72	84.186	ENSORLG00020012171	rad54b	100	84.186	Oryzias_latipes_hni
ENSCVAG00000009200	rad54b	100	74.814	ENSORLG00015018536	rad54b	100	74.814	Oryzias_latipes_hsok
ENSCVAG00000009200	rad54b	87	83.636	ENSOMEG00000004345	rad54b	100	83.636	Oryzias_melastigma
ENSCVAG00000009200	rad54b	99	54.536	ENSOGAG00000007854	-	99	54.536	Otolemur_garnettii
ENSCVAG00000009200	rad54b	89	61.635	ENSOARG00000007691	-	96	61.635	Ovis_aries
ENSCVAG00000009200	rad54b	99	54.902	ENSPPAG00000029572	-	99	54.902	Pan_paniscus
ENSCVAG00000009200	rad54b	99	57.050	ENSPPRG00000007571	-	99	61.202	Panthera_pardus
ENSCVAG00000009200	rad54b	82	61.202	ENSPTIG00000012670	-	99	61.202	Panthera_tigris_altaica
ENSCVAG00000009200	rad54b	99	55.991	ENSPTRG00000020427	-	99	59.973	Pan_troglodytes
ENSCVAG00000009200	rad54b	99	56.004	ENSPANG00000019566	-	99	56.004	Papio_anubis
ENSCVAG00000009200	rad54b	99	63.952	ENSPKIG00000014974	rad54b	99	64.169	Paramormyrops_kingsleyae
ENSCVAG00000009200	rad54b	99	58.009	ENSPSIG00000002383	-	96	63.145	Pelodiscus_sinensis
ENSCVAG00000009200	rad54b	99	56.656	ENSPEMG00000012133	Rad54b	99	56.656	Peromyscus_maniculatus_bairdii
ENSCVAG00000009200	rad54b	89	59.596	ENSPMAG00000002916	rad54b	98	59.799	Petromyzon_marinus
ENSCVAG00000009200	rad54b	89	61.323	ENSPCIG00000020151	-	92	61.323	Phascolarctos_cinereus
ENSCVAG00000009200	rad54b	99	82.618	ENSPFOG00000023411	rad54b	99	82.618	Poecilia_formosa
ENSCVAG00000009200	rad54b	99	82.511	ENSPLAG00000010430	rad54b	99	82.511	Poecilia_latipinna
ENSCVAG00000009200	rad54b	99	85.006	ENSPMEG00000016873	rad54b	99	85.006	Poecilia_mexicana
ENSCVAG00000009200	rad54b	99	86.728	ENSPREG00000018443	rad54b	99	86.728	Poecilia_reticulata
ENSCVAG00000009200	rad54b	99	55.882	ENSPPYG00000018750	-	99	55.882	Pongo_abelii
ENSCVAG00000009200	rad54b	99	56.148	ENSPCOG00000026845	-	99	59.973	Propithecus_coquereli
ENSCVAG00000009200	rad54b	84	59.623	ENSPVAG00000000261	-	85	59.623	Pteropus_vampyrus
ENSCVAG00000009200	rad54b	89	84.036	ENSPNYG00000018303	rad54b	96	84.036	Pundamilia_nyererei
ENSCVAG00000009200	rad54b	99	64.612	ENSPNAG00000000295	rad54b	99	64.652	Pygocentrus_nattereri
ENSCVAG00000009200	rad54b	99	57.539	ENSRNOG00000039949	Rad54b	99	57.539	Rattus_norvegicus
ENSCVAG00000009200	rad54b	99	55.459	ENSRBIG00000020419	-	99	55.459	Rhinopithecus_bieti
ENSCVAG00000009200	rad54b	99	55.459	ENSRROG00000039897	-	99	55.459	Rhinopithecus_roxellana
ENSCVAG00000009200	rad54b	82	37.814	YBR073W	RDH54	79	38.065	Saccharomyces_cerevisiae
ENSCVAG00000009200	rad54b	99	56.209	ENSSBOG00000028501	-	99	56.209	Saimiri_boliviensis_boliviensis
ENSCVAG00000009200	rad54b	99	56.169	ENSSHAG00000017038	-	99	56.169	Sarcophilus_harrisii
ENSCVAG00000009200	rad54b	65	72.438	ENSSFOG00015008483	rad54b	89	72.438	Scleropages_formosus
ENSCVAG00000009200	rad54b	99	78.833	ENSSMAG00000018659	rad54b	99	78.833	Scophthalmus_maximus
ENSCVAG00000009200	rad54b	97	77.377	ENSSDUG00000001122	rad54b	96	77.377	Seriola_dumerili
ENSCVAG00000009200	rad54b	100	77.778	ENSSLDG00000013787	rad54b	100	77.778	Seriola_lalandi_dorsalis
ENSCVAG00000009200	rad54b	99	59.755	ENSSPUG00000016497	-	99	59.755	Sphenodon_punctatus
ENSCVAG00000009200	rad54b	100	81.644	ENSSPAG00000012800	rad54b	100	81.644	Stegastes_partitus
ENSCVAG00000009200	rad54b	99	57.063	ENSSSCG00000006101	-	97	61.372	Sus_scrofa
ENSCVAG00000009200	rad54b	99	58.868	ENSTGUG00000011880	-	99	58.868	Taeniopygia_guttata
ENSCVAG00000009200	rad54b	100	73.228	ENSTRUG00000010015	rad54b	99	73.122	Takifugu_rubripes
ENSCVAG00000009200	rad54b	99	53.238	ENSTTRG00000006312	-	99	53.238	Tursiops_truncatus
ENSCVAG00000009200	rad54b	99	57.096	ENSUMAG00000016401	-	99	57.096	Ursus_maritimus
ENSCVAG00000009200	rad54b	99	56.612	ENSVPAG00000003157	-	99	56.612	Vicugna_pacos
ENSCVAG00000009200	rad54b	99	51.441	ENSXETG00000025924	rad54b	98	54.329	Xenopus_tropicalis
ENSCVAG00000009200	rad54b	99	87.400	ENSXMAG00000013141	rad54b	99	87.400	Xiphophorus_maculatus