EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000009222 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171927
Alias: -
Full Name: ras-related protein Rab-1B-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 3127 bases
Position: chrKL652845.1:421521-424647
Accession: 107091612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000024866	MMR_HSR1	PF01926.23	6.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003112	-	645	XM_015385631	ENSCVAP00000024866	214 (aa)	XP_015241117	-

Gene Model

Click here to download ENSCVAG00000009222's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009222's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000009222	zgc:171927	100	69.907	ENSCVAG00000022585	-	100	69.907
ENSCVAG00000009222	zgc:171927	77	38.462	ENSCVAG00000005429	-	82	38.462
ENSCVAG00000009222	zgc:171927	87	32.487	ENSCVAG00000006083	si:cabz01085950.1	97	32.487
ENSCVAG00000009222	zgc:171927	80	45.930	ENSCVAG00000003539	rab12	70	45.930
ENSCVAG00000009222	zgc:171927	76	49.080	ENSCVAG00000008276	RAB15	90	57.273
ENSCVAG00000009222	zgc:171927	78	46.821	ENSCVAG00000019227	zgc:101559	74	46.821
ENSCVAG00000009222	zgc:171927	81	32.584	ENSCVAG00000004027	rheb	91	32.584
ENSCVAG00000009222	zgc:171927	76	37.195	ENSCVAG00000008670	hrasb	86	37.195
ENSCVAG00000009222	zgc:171927	73	37.888	ENSCVAG00000021826	rab9b	80	37.888
ENSCVAG00000009222	zgc:171927	55	31.092	ENSCVAG00000004305	arl4aa	59	31.092
ENSCVAG00000009222	zgc:171927	79	51.786	ENSCVAG00000019718	-	77	51.786
ENSCVAG00000009222	zgc:171927	81	39.080	ENSCVAG00000018433	rab22a	90	39.080
ENSCVAG00000009222	zgc:171927	90	54.082	ENSCVAG00000022649	-	98	54.082
ENSCVAG00000009222	zgc:171927	74	37.888	ENSCVAG00000018191	rab34a	61	37.888
ENSCVAG00000009222	zgc:171927	79	44.444	ENSCVAG00000014915	RAB39B	80	44.444
ENSCVAG00000009222	zgc:171927	76	65.432	ENSCVAG00000012806	rab35b	80	65.432
ENSCVAG00000009222	zgc:171927	75	51.235	ENSCVAG00000015451	rab18a	79	51.235
ENSCVAG00000009222	zgc:171927	99	44.550	ENSCVAG00000017021	-	96	44.550
ENSCVAG00000009222	zgc:171927	76	47.239	ENSCVAG00000008239	rab5aa	75	47.239
ENSCVAG00000009222	zgc:171927	80	45.614	ENSCVAG00000008126	-	81	45.614
ENSCVAG00000009222	zgc:171927	73	36.076	ENSCVAG00000011432	rabl2	69	36.076
ENSCVAG00000009222	zgc:171927	75	40.373	ENSCVAG00000001618	rab41	76	40.373
ENSCVAG00000009222	zgc:171927	93	34.158	ENSCVAG00000016312	rab9a	92	34.158
ENSCVAG00000009222	zgc:171927	76	32.515	ENSCVAG00000001281	rhebl1	88	32.515
ENSCVAG00000009222	zgc:171927	79	45.562	ENSCVAG00000022353	rab14	79	45.562
ENSCVAG00000009222	zgc:171927	79	37.572	ENSCVAG00000002953	RAB9A	85	37.572
ENSCVAG00000009222	zgc:171927	55	31.405	ENSCVAG00000020378	arl8ba	61	31.405
ENSCVAG00000009222	zgc:171927	86	36.413	ENSCVAG00000020501	rab23	98	34.804
ENSCVAG00000009222	zgc:171927	80	47.674	ENSCVAG00000020003	rab25b	83	47.674
ENSCVAG00000009222	zgc:171927	79	43.860	ENSCVAG00000015862	-	80	43.860
ENSCVAG00000009222	zgc:171927	74	38.272	ENSCVAG00000001150	si:dkey-13a21.4	79	38.272
ENSCVAG00000009222	zgc:171927	78	54.819	ENSCVAG00000018085	rab30	82	54.819
ENSCVAG00000009222	zgc:171927	79	54.167	ENSCVAG00000013878	rab11a	78	54.167
ENSCVAG00000009222	zgc:171927	77	37.576	ENSCVAG00000006062	KRAS	91	36.994
ENSCVAG00000009222	zgc:171927	96	36.486	ENSCVAG00000000862	-	90	36.486
ENSCVAG00000009222	zgc:171927	78	43.452	ENSCVAG00000014416	-	80	43.452
ENSCVAG00000009222	zgc:171927	91	36.500	ENSCVAG00000022249	rab6a	92	36.500
ENSCVAG00000009222	zgc:171927	82	46.286	ENSCVAG00000010727	rab4a	82	46.286
ENSCVAG00000009222	zgc:171927	99	44.550	ENSCVAG00000020016	rab11al	96	44.550
ENSCVAG00000009222	zgc:171927	77	38.462	ENSCVAG00000000281	RAB7A	82	38.462
ENSCVAG00000009222	zgc:171927	76	44.172	ENSCVAG00000009550	rab5c	89	40.291
ENSCVAG00000009222	zgc:171927	93	75.879	ENSCVAG00000022799	-	96	75.879
ENSCVAG00000009222	zgc:171927	76	62.963	ENSCVAG00000003537	si:dkey-16l2.16	78	62.577
ENSCVAG00000009222	zgc:171927	86	46.486	ENSCVAG00000017623	rab2a	86	46.486
ENSCVAG00000009222	zgc:171927	83	31.282	ENSCVAG00000013135	rasl11a	75	31.282
ENSCVAG00000009222	zgc:171927	82	38.286	ENSCVAG00000012889	rab6ba	80	38.286
ENSCVAG00000009222	zgc:171927	50	30.000	ENSCVAG00000008445	arl2	66	30.000
ENSCVAG00000009222	zgc:171927	76	33.333	ENSCVAG00000014038	RAB29	82	33.333
ENSCVAG00000009222	zgc:171927	79	35.088	ENSCVAG00000008389	si:ch73-116o1.2	80	35.714
ENSCVAG00000009222	zgc:171927	76	42.515	ENSCVAG00000011665	rab33a	61	42.515
ENSCVAG00000009222	zgc:171927	99	45.498	ENSCVAG00000019751	-	96	45.498
ENSCVAG00000009222	zgc:171927	82	38.286	ENSCVAG00000004751	rab6bb	80	38.286
ENSCVAG00000009222	zgc:171927	52	30.172	ENSCVAG00000013902	-	67	30.172
ENSCVAG00000009222	zgc:171927	98	38.462	ENSCVAG00000017064	si:dkey-34d22.5	97	38.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000009222	zgc:171927	100	93.458	ENSAPOG00000004980	-	100	93.458	Acanthochromis_polyacanthus
ENSCVAG00000009222	zgc:171927	100	93.458	ENSACIG00000009006	zgc:171927	100	93.458	Amphilophus_citrinellus
ENSCVAG00000009222	zgc:171927	100	91.589	ENSAOCG00000024149	-	100	91.589	Amphiprion_ocellaris
ENSCVAG00000009222	zgc:171927	71	88.387	ENSAOCG00000013808	-	93	97.521	Amphiprion_ocellaris
ENSCVAG00000009222	zgc:171927	100	92.056	ENSAPEG00000022171	zgc:171927	99	92.056	Amphiprion_percula
ENSCVAG00000009222	zgc:171927	100	93.458	ENSATEG00000003430	zgc:171927	100	93.458	Anabas_testudineus
ENSCVAG00000009222	zgc:171927	100	91.589	ENSACLG00000013734	-	100	91.589	Astatotilapia_calliptera
ENSCVAG00000009222	zgc:171927	100	79.535	ENSAMXG00000039486	zgc:171927	100	79.535	Astyanax_mexicanus
ENSCVAG00000009222	zgc:171927	100	89.252	ENSCSEG00000014416	zgc:171927	100	89.252	Cynoglossus_semilaevis
ENSCVAG00000009222	zgc:171927	100	78.140	ENSDARG00000033056	zgc:171927	100	78.140	Danio_rerio
ENSCVAG00000009222	zgc:171927	94	81.683	ENSELUG00000011680	zgc:171927	100	77.778	Esox_lucius
ENSCVAG00000009222	zgc:171927	100	95.794	ENSFHEG00000022176	zgc:171927	100	95.794	Fundulus_heteroclitus
ENSCVAG00000009222	zgc:171927	98	80.569	ENSGMOG00000004979	-	97	80.569	Gadus_morhua
ENSCVAG00000009222	zgc:171927	98	93.301	ENSGAFG00000015702	zgc:171927	84	93.301	Gambusia_affinis
ENSCVAG00000009222	zgc:171927	100	90.654	ENSGACG00000013401	zgc:171927	99	90.654	Gasterosteus_aculeatus
ENSCVAG00000009222	zgc:171927	100	91.589	ENSHBUG00000002397	-	100	91.589	Haplochromis_burtoni
ENSCVAG00000009222	zgc:171927	100	93.925	ENSKMAG00000009856	zgc:171927	100	93.925	Kryptolebias_marmoratus
ENSCVAG00000009222	zgc:171927	98	88.995	ENSLBEG00000027226	-	89	88.995	Labrus_bergylta
ENSCVAG00000009222	zgc:171927	100	89.720	ENSLBEG00000005791	-	100	89.720	Labrus_bergylta
ENSCVAG00000009222	zgc:171927	98	71.905	ENSLOCG00000014692	zgc:171927	96	71.905	Lepisosteus_oculatus
ENSCVAG00000009222	zgc:171927	100	90.187	ENSMAMG00000020135	zgc:171927	100	90.187	Mastacembelus_armatus
ENSCVAG00000009222	zgc:171927	100	91.589	ENSMZEG00005024685	-	100	91.589	Maylandia_zebra
ENSCVAG00000009222	zgc:171927	100	87.850	ENSMMOG00000009833	-	100	87.850	Mola_mola
ENSCVAG00000009222	zgc:171927	100	89.252	ENSMALG00000021129	zgc:171927	100	89.252	Monopterus_albus
ENSCVAG00000009222	zgc:171927	100	91.121	ENSNBRG00000006202	zgc:171927	100	91.121	Neolamprologus_brichardi
ENSCVAG00000009222	zgc:171927	100	90.654	ENSORLG00000000602	zgc:171927	100	90.654	Oryzias_latipes
ENSCVAG00000009222	zgc:171927	100	90.654	ENSORLG00020021071	zgc:171927	100	90.654	Oryzias_latipes_hni
ENSCVAG00000009222	zgc:171927	100	90.654	ENSORLG00015010098	zgc:171927	100	90.654	Oryzias_latipes_hsok
ENSCVAG00000009222	zgc:171927	100	92.056	ENSOMEG00000020594	zgc:171927	100	92.056	Oryzias_melastigma
ENSCVAG00000009222	zgc:171927	100	93.925	ENSPFOG00000013810	zgc:171927	99	93.925	Poecilia_formosa
ENSCVAG00000009222	zgc:171927	100	92.991	ENSPLAG00000005869	zgc:171927	100	92.991	Poecilia_latipinna
ENSCVAG00000009222	zgc:171927	100	93.925	ENSPMEG00000022350	zgc:171927	100	93.925	Poecilia_mexicana
ENSCVAG00000009222	zgc:171927	100	94.393	ENSPREG00000017517	zgc:171927	100	94.393	Poecilia_reticulata
ENSCVAG00000009222	zgc:171927	100	91.589	ENSPNYG00000007520	-	100	91.589	Pundamilia_nyererei
ENSCVAG00000009222	zgc:171927	100	79.535	ENSPNAG00000029574	zgc:171927	100	79.535	Pygocentrus_nattereri
ENSCVAG00000009222	zgc:171927	100	77.674	ENSSFOG00015005464	zgc:171927	99	77.674	Scleropages_formosus
ENSCVAG00000009222	zgc:171927	100	89.720	ENSSMAG00000004416	-	100	89.720	Scophthalmus_maximus
ENSCVAG00000009222	zgc:171927	100	93.458	ENSSDUG00000004445	zgc:171927	100	93.458	Seriola_dumerili
ENSCVAG00000009222	zgc:171927	100	93.458	ENSSLDG00000018024	zgc:171927	100	93.458	Seriola_lalandi_dorsalis
ENSCVAG00000009222	zgc:171927	100	92.991	ENSSPAG00000013533	zgc:171927	100	92.991	Stegastes_partitus
ENSCVAG00000009222	zgc:171927	100	94.860	ENSXCOG00000010695	zgc:171927	100	94.860	Xiphophorus_couchianus
ENSCVAG00000009222	zgc:171927	100	94.860	ENSXMAG00000004683	zgc:171927	100	94.860	Xiphophorus_maculatus