EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000009252 (Gene tree)
Gene ID: 107103092
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 6954 bases
Position: chrKL653876.1:155465-162418
Accession: 107103092
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000024836	HVSL	PF09749.9	1.9e-61	1	1
ENSCVAP00000024841	HVSL	PF09749.9	7.8e-57	1	1
ENSCVAP00000007561	HVSL	PF09749.9	2.7e-51	1	1
ENSCVAP00000024844	HVSL	PF09749.9	1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000003095	-	633	-	ENSCVAP00000007561	210 (aa)	-	-
ENSCVAT00000003157	-	522	-	ENSCVAP00000024844	173 (aa)	-	-
ENSCVAT00000003186	-	1054	XM_015402613	ENSCVAP00000024836	233 (aa)	XP_015258099	-
ENSCVAT00000003165	-	819	-	ENSCVAP00000024841	272 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000009252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000009252	usb1	97	50.000	ENSG00000103005	USB1	95	51.961	Homo_sapiens
ENSCVAG00000009252	usb1	97	73.568	ENSAPOG00000011942	usb1	80	73.568	Acanthochromis_polyacanthus
ENSCVAG00000009252	usb1	97	49.123	ENSAMEG00000017205	USB1	83	48.684	Ailuropoda_melanoleuca
ENSCVAG00000009252	usb1	98	71.053	ENSACIG00000012234	usb1	83	71.053	Amphilophus_citrinellus
ENSCVAG00000009252	usb1	98	75.439	ENSAOCG00000014831	usb1	79	75.439	Amphiprion_ocellaris
ENSCVAG00000009252	usb1	98	75.000	ENSAPEG00000000296	usb1	79	75.000	Amphiprion_percula
ENSCVAG00000009252	usb1	98	75.877	ENSATEG00000009348	usb1	80	75.877	Anabas_testudineus
ENSCVAG00000009252	usb1	97	52.632	ENSAPLG00000002756	USB1	100	52.632	Anas_platyrhynchos
ENSCVAG00000009252	usb1	97	48.684	ENSACAG00000015481	USB1	99	48.684	Anolis_carolinensis
ENSCVAG00000009252	usb1	97	49.123	ENSANAG00000035640	USB1	85	48.684	Aotus_nancymaae
ENSCVAG00000009252	usb1	97	69.604	ENSACLG00000020586	usb1	79	69.604	Astatotilapia_calliptera
ENSCVAG00000009252	usb1	97	61.674	ENSAMXG00000040146	usb1	74	61.233	Astyanax_mexicanus
ENSCVAG00000009252	usb1	97	50.877	ENSBTAG00000015758	USB1	85	50.439	Bos_taurus
ENSCVAG00000009252	usb1	97	50.439	ENSCJAG00000011733	USB1	85	50.000	Callithrix_jacchus
ENSCVAG00000009252	usb1	97	48.018	ENSCAFG00000008556	USB1	60	47.577	Canis_familiaris
ENSCVAG00000009252	usb1	97	48.018	ENSCAFG00020009263	USB1	84	47.577	Canis_lupus_dingo
ENSCVAG00000009252	usb1	97	50.000	ENSCHIG00000024290	USB1	85	49.561	Capra_hircus
ENSCVAG00000009252	usb1	97	49.561	ENSTSYG00000006997	USB1	85	49.123	Carlito_syrichta
ENSCVAG00000009252	usb1	97	40.789	ENSCAPG00000009057	USB1	96	40.351	Cavia_aperea
ENSCVAG00000009252	usb1	97	50.877	ENSCPOG00000014325	USB1	83	50.439	Cavia_porcellus
ENSCVAG00000009252	usb1	97	50.000	ENSCCAG00000022132	USB1	85	49.561	Cebus_capucinus
ENSCVAG00000009252	usb1	97	50.439	ENSCATG00000032174	USB1	85	50.000	Cercocebus_atys
ENSCVAG00000009252	usb1	74	49.133	ENSCLAG00000007363	USB1	87	51.634	Chinchilla_lanigera
ENSCVAG00000009252	usb1	97	50.000	ENSCSAG00000004783	USB1	85	49.561	Chlorocebus_sabaeus
ENSCVAG00000009252	usb1	97	52.193	ENSCPBG00000026943	USB1	81	52.193	Chrysemys_picta_bellii
ENSCVAG00000009252	usb1	97	32.906	ENSCING00000011490	-	79	35.407	Ciona_intestinalis
ENSCVAG00000009252	usb1	96	31.169	ENSCSAVG00000000894	-	82	30.901	Ciona_savignyi
ENSCVAG00000009252	usb1	97	50.877	ENSCANG00000037135	USB1	85	50.439	Colobus_angolensis_palliatus
ENSCVAG00000009252	usb1	97	50.435	ENSCGRG00001011243	USB1	84	50.000	Cricetulus_griseus_chok1gshd
ENSCVAG00000009252	usb1	97	50.435	ENSCGRG00000013252	USB1	84	50.000	Cricetulus_griseus_crigri
ENSCVAG00000009252	usb1	98	68.860	ENSCSEG00000013881	usb1	81	68.860	Cynoglossus_semilaevis
ENSCVAG00000009252	usb1	99	57.576	ENSDARG00000003841	usb1	82	57.576	Danio_rerio
ENSCVAG00000009252	usb1	98	48.696	ENSDORG00000001888	Usb1	85	48.261	Dipodomys_ordii
ENSCVAG00000009252	usb1	88	41.063	FBgn0037713	CG16790	78	40.291	Drosophila_melanogaster
ENSCVAG00000009252	usb1	97	42.982	ENSETEG00000019682	USB1	84	42.544	Echinops_telfairi
ENSCVAG00000009252	usb1	97	45.575	ENSEBUG00000005889	usb1	78	45.133	Eptatretus_burgeri
ENSCVAG00000009252	usb1	97	50.439	ENSEASG00005005484	USB1	85	50.000	Equus_asinus_asinus
ENSCVAG00000009252	usb1	97	50.000	ENSECAG00000019493	USB1	77	49.561	Equus_caballus
ENSCVAG00000009252	usb1	74	46.821	ENSEEUG00000000154	USB1	58	48.366	Erinaceus_europaeus
ENSCVAG00000009252	usb1	97	59.649	ENSELUG00000010974	usb1	83	59.389	Esox_lucius
ENSCVAG00000009252	usb1	97	49.123	ENSFCAG00000002693	USB1	84	48.684	Felis_catus
ENSCVAG00000009252	usb1	97	52.193	ENSFALG00000006876	USB1	78	54.106	Ficedula_albicollis
ENSCVAG00000009252	usb1	97	50.000	ENSFDAG00000010052	USB1	84	49.561	Fukomys_damarensis
ENSCVAG00000009252	usb1	84	81.538	ENSFHEG00000012334	usb1	77	81.538	Fundulus_heteroclitus
ENSCVAG00000009252	usb1	97	69.469	ENSGMOG00000004228	usb1	99	69.027	Gadus_morhua
ENSCVAG00000009252	usb1	97	51.101	ENSGALG00000035604	USB1	88	51.316	Gallus_gallus
ENSCVAG00000009252	usb1	97	83.260	ENSGAFG00000021890	usb1	81	83.260	Gambusia_affinis
ENSCVAG00000009252	usb1	98	71.053	ENSGACG00000003257	usb1	81	71.053	Gasterosteus_aculeatus
ENSCVAG00000009252	usb1	97	53.509	ENSGAGG00000022572	USB1	82	53.509	Gopherus_agassizii
ENSCVAG00000009252	usb1	97	50.439	ENSGGOG00000017147	USB1	85	50.000	Gorilla_gorilla
ENSCVAG00000009252	usb1	97	69.604	ENSHBUG00000009823	usb1	80	69.604	Haplochromis_burtoni
ENSCVAG00000009252	usb1	97	49.123	ENSHGLG00000016078	USB1	82	48.684	Heterocephalus_glaber_female
ENSCVAG00000009252	usb1	97	49.123	ENSHGLG00100005562	USB1	82	48.684	Heterocephalus_glaber_male
ENSCVAG00000009252	usb1	95	68.326	ENSHCOG00000015633	usb1	88	68.831	Hippocampus_comes
ENSCVAG00000009252	usb1	98	59.825	ENSIPUG00000008601	usb1	78	59.389	Ictalurus_punctatus
ENSCVAG00000009252	usb1	97	50.439	ENSSTOG00000007548	USB1	82	50.000	Ictidomys_tridecemlineatus
ENSCVAG00000009252	usb1	97	50.439	ENSJJAG00000021859	Usb1	84	50.000	Jaculus_jaculus
ENSCVAG00000009252	usb1	97	76.211	ENSKMAG00000007200	usb1	79	76.211	Kryptolebias_marmoratus
ENSCVAG00000009252	usb1	95	70.136	ENSLBEG00000008452	usb1	68	70.136	Labrus_bergylta
ENSCVAG00000009252	usb1	89	54.286	ENSLACG00000000105	USB1	72	54.286	Latimeria_chalumnae
ENSCVAG00000009252	usb1	98	53.275	ENSLOCG00000000465	usb1	80	53.275	Lepisosteus_oculatus
ENSCVAG00000009252	usb1	97	42.128	ENSLAFG00000002267	USB1	83	38.912	Loxodonta_africana
ENSCVAG00000009252	usb1	97	50.439	ENSMFAG00000003926	USB1	85	50.000	Macaca_fascicularis
ENSCVAG00000009252	usb1	97	50.439	ENSMMUG00000022669	USB1	85	50.000	Macaca_mulatta
ENSCVAG00000009252	usb1	97	50.000	ENSMNEG00000042487	USB1	85	49.561	Macaca_nemestrina
ENSCVAG00000009252	usb1	97	50.439	ENSMLEG00000028756	USB1	85	50.000	Mandrillus_leucophaeus
ENSCVAG00000009252	usb1	98	77.193	ENSMAMG00000015092	usb1	81	77.193	Mastacembelus_armatus
ENSCVAG00000009252	usb1	97	69.604	ENSMZEG00005010008	usb1	80	69.604	Maylandia_zebra
ENSCVAG00000009252	usb1	97	50.000	ENSMAUG00000007832	Usb1	84	49.565	Mesocricetus_auratus
ENSCVAG00000009252	usb1	97	50.877	ENSMICG00000004900	USB1	85	50.439	Microcebus_murinus
ENSCVAG00000009252	usb1	97	50.000	ENSMOCG00000022647	Usb1	84	50.435	Microtus_ochrogaster
ENSCVAG00000009252	usb1	98	71.491	ENSMMOG00000000490	usb1	87	71.491	Mola_mola
ENSCVAG00000009252	usb1	95	50.901	ENSMODG00000014067	USB1	84	51.316	Monodelphis_domestica
ENSCVAG00000009252	usb1	97	72.687	ENSMALG00000005930	usb1	79	72.687	Monopterus_albus
ENSCVAG00000009252	usb1	97	48.684	MGP_CAROLIEiJ_G0031421	Usb1	96	45.946	Mus_caroli
ENSCVAG00000009252	usb1	97	49.565	ENSMUSG00000031792	Usb1	98	44.248	Mus_musculus
ENSCVAG00000009252	usb1	97	50.000	MGP_PahariEiJ_G0023019	Usb1	99	48.276	Mus_pahari
ENSCVAG00000009252	usb1	97	48.684	MGP_SPRETEiJ_G0032540	Usb1	84	47.391	Mus_spretus
ENSCVAG00000009252	usb1	97	48.684	ENSMPUG00000004684	USB1	80	48.246	Mustela_putorius_furo
ENSCVAG00000009252	usb1	97	51.316	ENSMLUG00000007400	USB1	97	50.877	Myotis_lucifugus
ENSCVAG00000009252	usb1	97	50.439	ENSNGAG00000009703	Usb1	83	50.000	Nannospalax_galili
ENSCVAG00000009252	usb1	98	62.445	ENSNBRG00000008747	usb1	99	66.820	Neolamprologus_brichardi
ENSCVAG00000009252	usb1	88	50.725	ENSNLEG00000003340	USB1	81	50.242	Nomascus_leucogenys
ENSCVAG00000009252	usb1	62	46.296	ENSMEUG00000003328	-	72	45.133	Notamacropus_eugenii
ENSCVAG00000009252	usb1	65	48.673	ENSOPRG00000011803	USB1	54	46.923	Ochotona_princeps
ENSCVAG00000009252	usb1	97	49.561	ENSODEG00000016214	USB1	84	49.123	Octodon_degus
ENSCVAG00000009252	usb1	97	70.044	ENSONIG00000011063	usb1	80	70.044	Oreochromis_niloticus
ENSCVAG00000009252	usb1	97	48.684	ENSOANG00000012118	USB1	94	48.684	Ornithorhynchus_anatinus
ENSCVAG00000009252	usb1	97	74.449	ENSORLG00000012479	usb1	82	74.449	Oryzias_latipes
ENSCVAG00000009252	usb1	97	73.568	ENSORLG00020018671	usb1	82	73.568	Oryzias_latipes_hni
ENSCVAG00000009252	usb1	97	74.890	ENSORLG00015009679	usb1	83	74.890	Oryzias_latipes_hsok
ENSCVAG00000009252	usb1	97	75.771	ENSOMEG00000012930	usb1	81	75.771	Oryzias_melastigma
ENSCVAG00000009252	usb1	97	48.246	ENSOGAG00000003273	USB1	83	47.807	Otolemur_garnettii
ENSCVAG00000009252	usb1	97	50.439	ENSOARG00000001107	USB1	86	50.000	Ovis_aries
ENSCVAG00000009252	usb1	97	50.000	ENSPPAG00000042137	USB1	85	49.561	Pan_paniscus
ENSCVAG00000009252	usb1	97	49.123	ENSPPRG00000024797	USB1	84	48.684	Panthera_pardus
ENSCVAG00000009252	usb1	97	49.561	ENSPTIG00000007506	USB1	84	49.123	Panthera_tigris_altaica
ENSCVAG00000009252	usb1	97	47.368	ENSPTRG00000008172	USB1	95	52.451	Pan_troglodytes
ENSCVAG00000009252	usb1	97	50.439	ENSPANG00000025138	USB1	85	50.000	Papio_anubis
ENSCVAG00000009252	usb1	97	59.031	ENSPKIG00000015109	usb1	75	59.031	Paramormyrops_kingsleyae
ENSCVAG00000009252	usb1	97	41.975	ENSPSIG00000004305	USB1	100	41.975	Pelodiscus_sinensis
ENSCVAG00000009252	usb1	99	62.500	ENSPMGG00000017725	usb1	88	62.500	Periophthalmus_magnuspinnatus
ENSCVAG00000009252	usb1	97	50.000	ENSPEMG00000016183	Usb1	82	49.565	Peromyscus_maniculatus_bairdii
ENSCVAG00000009252	usb1	97	51.754	ENSPMAG00000000462	usb1	95	51.754	Petromyzon_marinus
ENSCVAG00000009252	usb1	97	83.700	ENSPFOG00000011130	usb1	81	83.700	Poecilia_formosa
ENSCVAG00000009252	usb1	97	82.819	ENSPLAG00000009820	usb1	81	82.819	Poecilia_latipinna
ENSCVAG00000009252	usb1	97	83.700	ENSPMEG00000006402	usb1	81	83.700	Poecilia_mexicana
ENSCVAG00000009252	usb1	84	82.564	ENSPREG00000001047	usb1	78	82.564	Poecilia_reticulata
ENSCVAG00000009252	usb1	91	46.977	ENSPPYG00000007401	USB1	84	46.512	Pongo_abelii
ENSCVAG00000009252	usb1	97	50.439	ENSPCOG00000022612	USB1	85	50.000	Propithecus_coquereli
ENSCVAG00000009252	usb1	97	49.561	ENSPVAG00000004613	USB1	86	48.261	Pteropus_vampyrus
ENSCVAG00000009252	usb1	97	69.604	ENSPNYG00000022262	usb1	80	69.604	Pundamilia_nyererei
ENSCVAG00000009252	usb1	97	62.281	ENSPNAG00000011736	usb1	76	61.842	Pygocentrus_nattereri
ENSCVAG00000009252	usb1	97	48.684	ENSRNOG00000013216	Usb1	84	48.246	Rattus_norvegicus
ENSCVAG00000009252	usb1	97	47.807	ENSRBIG00000044466	USB1	95	52.451	Rhinopithecus_bieti
ENSCVAG00000009252	usb1	97	50.439	ENSRROG00000029211	USB1	85	50.000	Rhinopithecus_roxellana
ENSCVAG00000009252	usb1	97	50.439	ENSSBOG00000029362	USB1	85	50.000	Saimiri_boliviensis_boliviensis
ENSCVAG00000009252	usb1	95	48.649	ENSSHAG00000006993	USB1	89	49.123	Sarcophilus_harrisii
ENSCVAG00000009252	usb1	97	61.947	ENSSFOG00015023663	usb1	70	61.674	Scleropages_formosus
ENSCVAG00000009252	usb1	97	69.710	ENSSMAG00000015834	usb1	80	69.295	Scophthalmus_maximus
ENSCVAG00000009252	usb1	99	75.325	ENSSDUG00000002949	usb1	84	75.325	Seriola_dumerili
ENSCVAG00000009252	usb1	97	76.211	ENSSLDG00000014174	usb1	80	76.211	Seriola_lalandi_dorsalis
ENSCVAG00000009252	usb1	90	52.607	ENSSPUG00000006741	USB1	96	53.398	Sphenodon_punctatus
ENSCVAG00000009252	usb1	98	74.123	ENSSPAG00000007484	usb1	79	74.123	Stegastes_partitus
ENSCVAG00000009252	usb1	97	50.000	ENSSSCG00000002807	USB1	83	49.561	Sus_scrofa
ENSCVAG00000009252	usb1	91	53.521	ENSTGUG00000004792	USB1	81	54.589	Taeniopygia_guttata
ENSCVAG00000009252	usb1	98	69.737	ENSTRUG00000021069	usb1	83	69.737	Takifugu_rubripes
ENSCVAG00000009252	usb1	99	63.203	ENSTNIG00000000626	usb1	85	63.203	Tetraodon_nigroviridis
ENSCVAG00000009252	usb1	97	35.088	ENSTBEG00000001507	USB1	97	34.649	Tupaia_belangeri
ENSCVAG00000009252	usb1	97	49.123	ENSUAMG00000016823	USB1	83	48.684	Ursus_americanus
ENSCVAG00000009252	usb1	93	49.083	ENSUMAG00000021369	USB1	95	50.490	Ursus_maritimus
ENSCVAG00000009252	usb1	97	48.018	ENSVVUG00000023700	USB1	86	47.577	Vulpes_vulpes
ENSCVAG00000009252	usb1	94	51.364	ENSXETG00000013795	usb1	89	51.327	Xenopus_tropicalis
ENSCVAG00000009252	usb1	97	83.260	ENSXMAG00000024687	usb1	78	72.083	Xiphophorus_maculatus