EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCVAG00000009386 (Gene tree)
Gene ID
107098254
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Cyprinodon_variegatus
Status
putative
Strand
Plus strand
Length
15574 bases
Position
chrKL653262.1:317510-333083
Accession
107098254
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCVAP00000007693RRM_1PF00076.226.7e-4412
ENSCVAP00000007693RRM_1PF00076.226.7e-4422
ENSCVAP00000007704RRM_1PF00076.227.8e-4412
ENSCVAP00000007704RRM_1PF00076.227.8e-4422
ENSCVAP00000024955RRM_1PF00076.227.8e-4412
ENSCVAP00000024955RRM_1PF00076.227.8e-4422
ENSCVAP00000024960RRM_1PF00076.227.8e-4412
ENSCVAP00000024960RRM_1PF00076.227.8e-4422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCVAT00000002857-2586XM_015395803ENSCVAP00000024960513 (aa)XP_015251289-
ENSCVAT00000002865-2630-ENSCVAP00000024955513 (aa)--
ENSCVAT00000002844-2615XM_015395806ENSCVAP00000007704513 (aa)XP_015251292-
ENSCVAT00000002872-2579XM_015395812ENSCVAP00000007693496 (aa)XP_015251298-
Gene Model
Click here to download ENSCVAG00000009386's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000009386's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCVAG00000009386puf60b5635.294ENSCVAG00000001259u2af2a6637.255
ENSCVAG00000009386puf60b5436.275ENSCVAG00000023307-6236.275
ENSCVAG00000009386puf60b9082.511ENSCVAG00000001560-9880.769
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCVAG00000009386puf60b10085.797ENSG00000179950PUF6010084.645Homo_sapiens
ENSCVAG00000009386puf60b10096.881ENSAPOG00000001713puf60b9896.881Acanthochromis_polyacanthus
ENSCVAG00000009386puf60b10083.685ENSAMEG00000006406PUF609282.342Ailuropoda_melanoleuca
ENSCVAG00000009386puf60b10077.432ENSACIG00000003263-9977.476Amphilophus_citrinellus
ENSCVAG00000009386puf60b10097.661ENSACIG00000021705puf60b10097.661Amphilophus_citrinellus
ENSCVAG00000009386puf60b10082.879ENSAOCG00000015558-9783.268Amphiprion_ocellaris
ENSCVAG00000009386puf60b10096.881ENSAOCG00000005395puf60b10096.881Amphiprion_ocellaris
ENSCVAG00000009386puf60b10076.353ENSAPEG00000001836-9977.291Amphiprion_percula
ENSCVAG00000009386puf60b10094.355ENSAPEG00000011923puf60b9794.355Amphiprion_percula
ENSCVAG00000009386puf60b10081.518ENSATEG00000006303-9882.101Anabas_testudineus
ENSCVAG00000009386puf60b10097.661ENSATEG00000001730puf60b9897.661Anabas_testudineus
ENSCVAG00000009386puf60b10086.180ENSAPLG00000010150PUF609985.029Anas_platyrhynchos
ENSCVAG00000009386puf60b10085.496ENSACAG00000001645PUF609684.542Anolis_carolinensis
ENSCVAG00000009386puf60b10085.605ENSANAG00000018626PUF6010084.453Aotus_nancymaae
ENSCVAG00000009386puf60b10097.661ENSACLG00000004462puf60b10097.661Astatotilapia_calliptera
ENSCVAG00000009386puf60b10081.025ENSAMXG00000041030puf60b10081.594Astyanax_mexicanus
ENSCVAG00000009386puf60b10087.625ENSAMXG00000036570puf60a9787.824Astyanax_mexicanus
ENSCVAG00000009386puf60b10085.988ENSBTAG00000037493PUF609884.837Bos_taurus
ENSCVAG00000009386puf60b8053.710WBGene00004389rnp-68354.704Caenorhabditis_elegans
ENSCVAG00000009386puf60b10085.797ENSCJAG00000021485PUF609784.645Callithrix_jacchus
ENSCVAG00000009386puf60b10085.413ENSCAFG00000001400PUF609284.261Canis_familiaris
ENSCVAG00000009386puf60b10085.797ENSCAFG00020018754PUF609784.645Canis_lupus_dingo
ENSCVAG00000009386puf60b10085.988ENSCHIG00000001618PUF608684.837Capra_hircus
ENSCVAG00000009386puf60b10085.797ENSTSYG00000011912PUF6010084.645Carlito_syrichta
ENSCVAG00000009386puf60b10080.762ENSCPOG00000014613PUF609379.429Cavia_porcellus
ENSCVAG00000009386puf60b10085.988ENSCCAG00000007744PUF609784.837Cebus_capucinus
ENSCVAG00000009386puf60b10085.797ENSCATG00000035405PUF609784.645Cercocebus_atys
ENSCVAG00000009386puf60b10085.797ENSCLAG00000009154PUF609184.645Chinchilla_lanigera
ENSCVAG00000009386puf60b10085.797ENSCSAG00000008878PUF6010084.645Chlorocebus_sabaeus
ENSCVAG00000009386puf60b10085.221ENSCPBG00000005595PUF609784.261Chrysemys_picta_bellii
ENSCVAG00000009386puf60b6262.461ENSCING00000002156-8763.057Ciona_intestinalis
ENSCVAG00000009386puf60b9848.932ENSCING00000008436-9548.723Ciona_intestinalis
ENSCVAG00000009386puf60b9753.905ENSCSAVG00000001385-9953.757Ciona_savignyi
ENSCVAG00000009386puf60b9749.689ENSCSAVG00000004765-9748.660Ciona_savignyi
ENSCVAG00000009386puf60b8185.071ENSCANG00000041843PUF6010083.649Colobus_angolensis_palliatus
ENSCVAG00000009386puf60b10085.988ENSCGRG00001017442Puf609184.837Cricetulus_griseus_chok1gshd
ENSCVAG00000009386puf60b10085.988ENSCGRG00000003717Puf609284.837Cricetulus_griseus_crigri
ENSCVAG00000009386puf60b10079.482ENSCSEG00000014845-8980.080Cynoglossus_semilaevis
ENSCVAG00000009386puf60b10097.271ENSCSEG00000019887puf60b9197.271Cynoglossus_semilaevis
ENSCVAG00000009386puf60b10081.594ENSDARG00000001241puf60b9998.413Danio_rerio
ENSCVAG00000009386puf60b10087.885ENSDARG00000032175puf60a9991.925Danio_rerio
ENSCVAG00000009386puf60b9971.206ENSDNOG00000043278PUF609070.817Dasypus_novemcinctus
ENSCVAG00000009386puf60b10085.988ENSDORG00000004585Puf609484.837Dipodomys_ordii
ENSCVAG00000009386puf60b9771.488ENSEBUG00000005470-8870.455Eptatretus_burgeri
ENSCVAG00000009386puf60b10061.739ENSEBUG00000014291puf60b8462.587Eptatretus_burgeri
ENSCVAG00000009386puf60b10085.797ENSEASG00005009695PUF609784.645Equus_asinus_asinus
ENSCVAG00000009386puf60b10085.797ENSECAG00000024681PUF609684.645Equus_caballus
ENSCVAG00000009386puf60b10087.977ENSELUG00000006507puf60b9985.478Esox_lucius
ENSCVAG00000009386puf60b10088.400ENSELUG00000018443-9988.400Esox_lucius
ENSCVAG00000009386puf60b10085.797ENSFCAG00000001045PUF6010084.645Felis_catus
ENSCVAG00000009386puf60b10076.583ENSFALG00000001136PUF609776.008Ficedula_albicollis
ENSCVAG00000009386puf60b10085.605ENSFDAG00000017177PUF609184.453Fukomys_damarensis
ENSCVAG00000009386puf60b10099.025ENSFHEG00000020046puf60b10099.025Fundulus_heteroclitus
ENSCVAG00000009386puf60b9681.670ENSFHEG00000021687PUF6010082.573Fundulus_heteroclitus
ENSCVAG00000009386puf60b10082.432ENSGMOG00000006392puf60b9982.046Gadus_morhua
ENSCVAG00000009386puf60b6688.921ENSGALG00000039901PUF609389.941Gallus_gallus
ENSCVAG00000009386puf60b10079.920ENSGAFG00000004334-9980.082Gambusia_affinis
ENSCVAG00000009386puf60b10098.830ENSGAFG00000021040puf60b10098.830Gambusia_affinis
ENSCVAG00000009386puf60b10072.374ENSGACG00000001484-10071.401Gasterosteus_aculeatus
ENSCVAG00000009386puf60b10083.626ENSGACG00000004717puf60b9783.626Gasterosteus_aculeatus
ENSCVAG00000009386puf60b10085.221ENSGAGG00000013289PUF609184.261Gopherus_agassizii
ENSCVAG00000009386puf60b10085.797ENSGGOG00000004646PUF609784.645Gorilla_gorilla
ENSCVAG00000009386puf60b10097.661ENSHBUG00000015118puf60b10097.661Haplochromis_burtoni
ENSCVAG00000009386puf60b10083.300ENSHBUG00000009634-10082.897Haplochromis_burtoni
ENSCVAG00000009386puf60b10085.605ENSHGLG00000006111PUF609184.453Heterocephalus_glaber_female
ENSCVAG00000009386puf60b10085.605ENSHGLG00100012362PUF609184.453Heterocephalus_glaber_male
ENSCVAG00000009386puf60b10091.729ENSHCOG00000015541puf60b9992.481Hippocampus_comes
ENSCVAG00000009386puf60b9866.863ENSHCOG00000000378-9965.595Hippocampus_comes
ENSCVAG00000009386puf60b10082.008ENSIPUG00000004660puf60b9981.629Ictalurus_punctatus
ENSCVAG00000009386puf60b10086.145ENSIPUG00000002453puf60a9985.743Ictalurus_punctatus
ENSCVAG00000009386puf60b10085.797ENSSTOG00000025037PUF609284.645Ictidomys_tridecemlineatus
ENSCVAG00000009386puf60b10085.988ENSJJAG00000001076Puf609284.837Jaculus_jaculus
ENSCVAG00000009386puf60b10098.441ENSKMAG00000016745puf60b10098.441Kryptolebias_marmoratus
ENSCVAG00000009386puf60b10077.543ENSKMAG00000010106-10077.969Kryptolebias_marmoratus
ENSCVAG00000009386puf60b10094.152ENSLBEG00000012505puf60b10094.152Labrus_bergylta
ENSCVAG00000009386puf60b7379.515ENSLACG00000005456PUF6010078.320Latimeria_chalumnae
ENSCVAG00000009386puf60b10088.932ENSLOCG00000010106puf60b9888.932Lepisosteus_oculatus
ENSCVAG00000009386puf60b10084.645ENSLAFG00000022929PUF609383.493Loxodonta_africana
ENSCVAG00000009386puf60b10085.797ENSMFAG00000043373PUF609884.645Macaca_fascicularis
ENSCVAG00000009386puf60b10085.797ENSMMUG00000013558PUF609784.645Macaca_mulatta
ENSCVAG00000009386puf60b10085.797ENSMNEG00000031099PUF609784.645Macaca_nemestrina
ENSCVAG00000009386puf60b10085.797ENSMLEG00000040009PUF6010084.645Mandrillus_leucophaeus
ENSCVAG00000009386puf60b10095.517ENSMAMG00000010394puf60b10092.979Mastacembelus_armatus
ENSCVAG00000009386puf60b10083.107ENSMAMG00000019476-9883.301Mastacembelus_armatus
ENSCVAG00000009386puf60b10083.074ENSMZEG00005019425-9882.685Maylandia_zebra
ENSCVAG00000009386puf60b10097.661ENSMZEG00005018515puf60b10097.661Maylandia_zebra
ENSCVAG00000009386puf60b10086.180ENSMGAG00000013070PUF609389.971Meleagris_gallopavo
ENSCVAG00000009386puf60b9670.637ENSMAUG00000018549-9569.877Mesocricetus_auratus
ENSCVAG00000009386puf60b6989.444ENSMAUG00000014267-8887.778Mesocricetus_auratus
ENSCVAG00000009386puf60b10085.797ENSMICG00000012226PUF609884.645Microcebus_murinus
ENSCVAG00000009386puf60b10085.988ENSMOCG00000018780Puf609284.837Microtus_ochrogaster
ENSCVAG00000009386puf60b10097.466ENSMMOG00000004217puf60b10097.466Mola_mola
ENSCVAG00000009386puf60b10075.502ENSMMOG00000018059-9975.459Mola_mola
ENSCVAG00000009386puf60b10085.413ENSMODG00000009161PUF609384.261Monodelphis_domestica
ENSCVAG00000009386puf60b10089.279ENSMALG00000006797puf60b9789.279Monopterus_albus
ENSCVAG00000009386puf60b10081.518ENSMALG00000000200-9881.323Monopterus_albus
ENSCVAG00000009386puf60b10086.180MGP_CAROLIEiJ_G0019910Puf609185.029Mus_caroli
ENSCVAG00000009386puf60b10086.180ENSMUSG00000002524Puf609185.029Mus_musculus
ENSCVAG00000009386puf60b10086.180MGP_PahariEiJ_G0019920Puf609185.029Mus_pahari
ENSCVAG00000009386puf60b10086.180MGP_SPRETEiJ_G0020812Puf609185.029Mus_spretus
ENSCVAG00000009386puf60b10085.605ENSMPUG00000008137PUF609184.453Mustela_putorius_furo
ENSCVAG00000009386puf60b10085.221ENSMLUG00000000238-9284.069Myotis_lucifugus
ENSCVAG00000009386puf60b10081.746ENSMLUG00000013032-9780.556Myotis_lucifugus
ENSCVAG00000009386puf60b10085.988ENSNGAG00000000712Puf6010084.837Nannospalax_galili
ENSCVAG00000009386puf60b10083.074ENSNBRG00000017223-9882.685Neolamprologus_brichardi
ENSCVAG00000009386puf60b8197.362ENSNBRG00000013047puf60b9797.362Neolamprologus_brichardi
ENSCVAG00000009386puf60b10085.797ENSNLEG00000002156PUF609784.645Nomascus_leucogenys
ENSCVAG00000009386puf60b7293.863ENSOPRG00000002147PUF607293.863Ochotona_princeps
ENSCVAG00000009386puf60b7189.412ENSODEG00000014024-8989.412Octodon_degus
ENSCVAG00000009386puf60b9863.889ENSODEG00000015513-9762.282Octodon_degus
ENSCVAG00000009386puf60b10097.661ENSONIG00000006247puf60b9797.661Oreochromis_niloticus
ENSCVAG00000009386puf60b10082.879ENSONIG00000014030-9782.490Oreochromis_niloticus
ENSCVAG00000009386puf60b9772.000ENSOANG00000006962PUF609770.238Ornithorhynchus_anatinus
ENSCVAG00000009386puf60b9981.310ENSORLG00000028655-9981.118Oryzias_latipes
ENSCVAG00000009386puf60b10097.466ENSORLG00000012279puf60b10097.466Oryzias_latipes
ENSCVAG00000009386puf60b10097.466ENSORLG00020007333puf6010097.466Oryzias_latipes_hni
ENSCVAG00000009386puf60b9981.942ENSORLG00020018144-9781.748Oryzias_latipes_hni
ENSCVAG00000009386puf60b10097.087ENSORLG00015007718puf60b10097.087Oryzias_latipes_hsok
ENSCVAG00000009386puf60b9981.942ENSORLG00015016833-9781.748Oryzias_latipes_hsok
ENSCVAG00000009386puf60b9982.093ENSOMEG00000022185-9781.712Oryzias_melastigma
ENSCVAG00000009386puf60b10094.847ENSOMEG00000001643puf60b10094.153Oryzias_melastigma
ENSCVAG00000009386puf60b10085.797ENSOGAG00000006259PUF609284.645Otolemur_garnettii
ENSCVAG00000009386puf60b10084.261ENSOARG00000016235PUF609783.109Ovis_aries
ENSCVAG00000009386puf60b10085.797ENSPPAG00000029933PUF609784.645Pan_paniscus
ENSCVAG00000009386puf60b10085.797ENSPPRG00000003257PUF6010084.645Panthera_pardus
ENSCVAG00000009386puf60b10085.119ENSPTIG00000009795PUF609882.342Panthera_tigris_altaica
ENSCVAG00000009386puf60b10085.797ENSPTRG00000020670PUF609784.645Pan_troglodytes
ENSCVAG00000009386puf60b10085.797ENSPTRG00000043963-9784.645Pan_troglodytes
ENSCVAG00000009386puf60b10085.797ENSPANG00000021936PUF609784.645Papio_anubis
ENSCVAG00000009386puf60b10089.669ENSPKIG00000012204puf60b10090.448Paramormyrops_kingsleyae
ENSCVAG00000009386puf60b10089.200ENSPKIG00000004295puf60a9991.343Paramormyrops_kingsleyae
ENSCVAG00000009386puf60b10085.605ENSPSIG00000004679PUF609884.453Pelodiscus_sinensis
ENSCVAG00000009386puf60b10095.543ENSPMGG00000013444puf60b9995.543Periophthalmus_magnuspinnatus
ENSCVAG00000009386puf60b10085.988ENSPEMG00000008820Puf609284.837Peromyscus_maniculatus_bairdii
ENSCVAG00000009386puf60b10085.797ENSPCIG00000020270PUF609884.645Phascolarctos_cinereus
ENSCVAG00000009386puf60b10099.025ENSPFOG00000019217puf60b9898.992Poecilia_formosa
ENSCVAG00000009386puf60b10081.165ENSPFOG00000011118-9781.359Poecilia_formosa
ENSCVAG00000009386puf60b10081.553ENSPLAG00000017025-9081.359Poecilia_latipinna
ENSCVAG00000009386puf60b10099.025ENSPLAG00000010754puf60b10099.025Poecilia_latipinna
ENSCVAG00000009386puf60b10099.025ENSPMEG00000000838puf60b10099.025Poecilia_mexicana
ENSCVAG00000009386puf60b10081.359ENSPMEG00000009767-9081.553Poecilia_mexicana
ENSCVAG00000009386puf60b10096.976ENSPREG00000005440puf60b10096.976Poecilia_reticulata
ENSCVAG00000009386puf60b8183.412ENSPPYG00000018951-9581.991Pongo_abelii
ENSCVAG00000009386puf60b8184.834ENSPCAG00000014837PUF6010083.412Procavia_capensis
ENSCVAG00000009386puf60b10085.605ENSPCOG00000027981PUF609884.453Propithecus_coquereli
ENSCVAG00000009386puf60b10096.203ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSCVAG00000009386puf60b10083.074ENSPNYG00000004273-9882.685Pundamilia_nyererei
ENSCVAG00000009386puf60b10097.661ENSPNYG00000002556puf60b10097.661Pundamilia_nyererei
ENSCVAG00000009386puf60b10082.863ENSPNAG00000019415puf60b8982.460Pygocentrus_nattereri
ENSCVAG00000009386puf60b10087.302ENSPNAG00000019909puf60a9987.500Pygocentrus_nattereri
ENSCVAG00000009386puf60b10086.180ENSRNOG00000009960Puf609285.029Rattus_norvegicus
ENSCVAG00000009386puf60b10085.797ENSRBIG00000035274PUF609784.645Rhinopithecus_bieti
ENSCVAG00000009386puf60b10085.797ENSRROG00000029360PUF609884.645Rhinopithecus_roxellana
ENSCVAG00000009386puf60b10084.453ENSSBOG00000027089PUF609783.301Saimiri_boliviensis_boliviensis
ENSCVAG00000009386puf60b9085.288ENSSHAG00000006668PUF608984.009Sarcophilus_harrisii
ENSCVAG00000009386puf60b9589.613ENSSFOG00015019371puf60a9889.613Scleropages_formosus
ENSCVAG00000009386puf60b10083.237ENSSFOG00015019619puf60b9985.976Scleropages_formosus
ENSCVAG00000009386puf60b7698.976ENSSMAG00000016381puf60b7598.976Scophthalmus_maximus
ENSCVAG00000009386puf60b9981.800ENSSDUG00000007048-9584.168Seriola_dumerili
ENSCVAG00000009386puf60b10095.611ENSSDUG00000009935puf60b9995.611Seriola_dumerili
ENSCVAG00000009386puf60b10097.661ENSSLDG00000024011puf60b10095.066Seriola_lalandi_dorsalis
ENSCVAG00000009386puf60b10081.154ENSSLDG00000007366-9981.382Seriola_lalandi_dorsalis
ENSCVAG00000009386puf60b6577.876ENSSPUG00000013518PUF609278.485Sphenodon_punctatus
ENSCVAG00000009386puf60b10082.558ENSSPAG00000020285-10082.946Stegastes_partitus
ENSCVAG00000009386puf60b10094.118ENSSPAG00000012144puf60b10094.687Stegastes_partitus
ENSCVAG00000009386puf60b10085.797ENSSSCG00000038800PUF609784.127Sus_scrofa
ENSCVAG00000009386puf60b10083.333ENSTGUG00000012797-9982.692Taeniopygia_guttata
ENSCVAG00000009386puf60b10081.288ENSTRUG00000008843-10080.684Takifugu_rubripes
ENSCVAG00000009386puf60b10096.491ENSTRUG00000005420puf60b10093.928Takifugu_rubripes
ENSCVAG00000009386puf60b10096.296ENSTNIG00000013675puf60b9996.296Tetraodon_nigroviridis
ENSCVAG00000009386puf60b10079.532ENSTNIG00000003069-9979.727Tetraodon_nigroviridis
ENSCVAG00000009386puf60b5785.223ENSTBEG00000002751-9784.880Tupaia_belangeri
ENSCVAG00000009386puf60b7766.097ENSTBEG00000001899-10066.952Tupaia_belangeri
ENSCVAG00000009386puf60b10084.453ENSTTRG00000017088PUF6010083.493Tursiops_truncatus
ENSCVAG00000009386puf60b10085.797ENSUAMG00000024917PUF609784.645Ursus_americanus
ENSCVAG00000009386puf60b10080.806ENSUMAG00000000272PUF609279.463Ursus_maritimus
ENSCVAG00000009386puf60b10085.797ENSVVUG00000022527PUF6010084.645Vulpes_vulpes
ENSCVAG00000009386puf60b10083.493ENSXETG00000012469puf609882.143Xenopus_tropicalis
ENSCVAG00000009386puf60b10098.992ENSXCOG00000012355puf60b10098.992Xiphophorus_couchianus
ENSCVAG00000009386puf60b10080.924ENSXMAG00000010507-9880.723Xiphophorus_maculatus
ENSCVAG00000009386puf60b10099.025ENSXMAG00000001862puf60b10099.025Xiphophorus_maculatus

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