EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000010316 (Gene tree)
Gene ID: 107085990
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 216034 bases
Position: chrKL652639.1:49810-265843
Accession: 107085990
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000008435	TUDOR	PF00567.24	1.2e-25	1	1
ENSCVAP00000008446	TUDOR	PF00567.24	1.2e-25	1	1
ENSCVAP00000008446	SNase	PF00565.17	3.1e-68	1	4
ENSCVAP00000008446	SNase	PF00565.17	3.1e-68	2	4
ENSCVAP00000008446	SNase	PF00565.17	3.1e-68	3	4
ENSCVAP00000008446	SNase	PF00565.17	3.1e-68	4	4
ENSCVAP00000008435	SNase	PF00565.17	1.8e-63	1	4
ENSCVAP00000008435	SNase	PF00565.17	1.8e-63	2	4
ENSCVAP00000008435	SNase	PF00565.17	1.8e-63	3	4
ENSCVAP00000008435	SNase	PF00565.17	1.8e-63	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000001610	-	3813	XM_015376704	ENSCVAP00000008446	911 (aa)	XP_015232190	UPI000742B8C8
ENSCVAT00000001636	-	2613	-	ENSCVAP00000008435	870 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000010316's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000010316's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000010316	snd1	100	83.678	ENSG00000197157	SND1	100	83.882	Homo_sapiens
ENSCVAG00000010316	snd1	100	95.829	ENSAPOG00000017599	snd1	100	95.829	Acanthochromis_polyacanthus
ENSCVAG00000010316	snd1	100	83.486	ENSAMEG00000004664	SND1	94	83.807	Ailuropoda_melanoleuca
ENSCVAG00000010316	snd1	100	92.536	ENSACIG00000003551	snd1	100	92.536	Amphilophus_citrinellus
ENSCVAG00000010316	snd1	100	95.609	ENSAOCG00000014166	snd1	100	95.609	Amphiprion_ocellaris
ENSCVAG00000010316	snd1	100	95.609	ENSAPEG00000007067	snd1	100	95.609	Amphiprion_percula
ENSCVAG00000010316	snd1	98	95.302	ENSATEG00000018475	snd1	89	95.302	Anabas_testudineus
ENSCVAG00000010316	snd1	100	83.678	ENSANAG00000034463	SND1	99	85.214	Aotus_nancymaae
ENSCVAG00000010316	snd1	100	94.182	ENSACLG00000022897	snd1	100	94.182	Astatotilapia_calliptera
ENSCVAG00000010316	snd1	100	89.106	ENSAMXG00000016318	snd1	99	89.890	Astyanax_mexicanus
ENSCVAG00000010316	snd1	100	83.908	ENSBTAG00000010692	SND1	100	84.211	Bos_taurus
ENSCVAG00000010316	snd1	99	47.027	WBGene00006626	tsn-1	99	47.351	Caenorhabditis_elegans
ENSCVAG00000010316	snd1	100	83.448	ENSCJAG00000017668	SND1	99	84.989	Callithrix_jacchus
ENSCVAG00000010316	snd1	100	83.793	ENSCAFG00000001700	SND1	100	84.101	Canis_familiaris
ENSCVAG00000010316	snd1	100	83.793	ENSCAFG00020021639	SND1	100	84.101	Canis_lupus_dingo
ENSCVAG00000010316	snd1	100	83.793	ENSCHIG00000023390	SND1	100	84.101	Capra_hircus
ENSCVAG00000010316	snd1	71	88.087	ENSTSYG00000004979	SND1	96	88.421	Carlito_syrichta
ENSCVAG00000010316	snd1	100	73.394	ENSCAPG00000010677	SND1	97	75.113	Cavia_aperea
ENSCVAG00000010316	snd1	100	83.563	ENSCPOG00000006251	SND1	100	83.882	Cavia_porcellus
ENSCVAG00000010316	snd1	100	83.678	ENSCCAG00000036847	SND1	100	83.991	Cebus_capucinus
ENSCVAG00000010316	snd1	100	83.793	ENSCATG00000035214	SND1	99	85.327	Cercocebus_atys
ENSCVAG00000010316	snd1	100	83.678	ENSCLAG00000011796	SND1	98	86.242	Chinchilla_lanigera
ENSCVAG00000010316	snd1	100	83.793	ENSCSAG00000010182	SND1	100	84.101	Chlorocebus_sabaeus
ENSCVAG00000010316	snd1	79	75.248	ENSCHOG00000002218	SND1	86	75.248	Choloepus_hoffmanni
ENSCVAG00000010316	snd1	100	84.303	ENSCPBG00000018094	SND1	100	84.303	Chrysemys_picta_bellii
ENSCVAG00000010316	snd1	100	54.938	ENSCING00000000524	-	99	55.641	Ciona_intestinalis
ENSCVAG00000010316	snd1	100	56.050	ENSCSAVG00000008807	-	99	56.332	Ciona_savignyi
ENSCVAG00000010316	snd1	100	83.793	ENSCANG00000035119	SND1	100	84.101	Colobus_angolensis_palliatus
ENSCVAG00000010316	snd1	100	83.103	ENSCGRG00001022514	Snd1	97	86.633	Cricetulus_griseus_chok1gshd
ENSCVAG00000010316	snd1	100	83.103	ENSCGRG00000012277	Snd1	99	84.650	Cricetulus_griseus_crigri
ENSCVAG00000010316	snd1	100	94.182	ENSCSEG00000008661	snd1	100	94.182	Cynoglossus_semilaevis
ENSCVAG00000010316	snd1	100	88.828	ENSDARG00000006766	snd1	99	91.182	Danio_rerio
ENSCVAG00000010316	snd1	100	81.193	ENSDNOG00000006795	SND1	100	82.790	Dasypus_novemcinctus
ENSCVAG00000010316	snd1	100	83.563	ENSDORG00000000336	Snd1	100	83.882	Dipodomys_ordii
ENSCVAG00000010316	snd1	99	50.280	FBgn0035121	Tudor-SN	99	50.161	Drosophila_melanogaster
ENSCVAG00000010316	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSCVAG00000010316	snd1	63	65.183	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSCVAG00000010316	snd1	100	82.373	ENSEASG00005008513	SND1	100	82.740	Equus_asinus_asinus
ENSCVAG00000010316	snd1	100	83.563	ENSECAG00000011451	SND1	100	83.882	Equus_caballus
ENSCVAG00000010316	snd1	100	75.057	ENSEEUG00000014737	SND1	99	74.862	Erinaceus_europaeus
ENSCVAG00000010316	snd1	99	88.145	ENSELUG00000001805	snd1	96	88.145	Esox_lucius
ENSCVAG00000010316	snd1	100	83.678	ENSFCAG00000008289	SND1	100	83.991	Felis_catus
ENSCVAG00000010316	snd1	100	83.563	ENSFDAG00000015881	SND1	100	83.772	Fukomys_damarensis
ENSCVAG00000010316	snd1	100	95.381	ENSFHEG00000004093	snd1	99	97.042	Fundulus_heteroclitus
ENSCVAG00000010316	snd1	75	83.616	ENSGMOG00000018932	snd1	66	83.616	Gadus_morhua
ENSCVAG00000010316	snd1	100	97.585	ENSGAFG00000008421	snd1	100	97.585	Gambusia_affinis
ENSCVAG00000010316	snd1	100	61.605	ENSGACG00000019793	snd1	100	61.605	Gasterosteus_aculeatus
ENSCVAG00000010316	snd1	100	83.793	ENSGGOG00000009614	SND1	99	85.327	Gorilla_gorilla
ENSCVAG00000010316	snd1	100	94.072	ENSHBUG00000019135	snd1	100	94.072	Haplochromis_burtoni
ENSCVAG00000010316	snd1	100	83.333	ENSHGLG00000003618	SND1	98	86.074	Heterocephalus_glaber_female
ENSCVAG00000010316	snd1	100	83.333	ENSHGLG00100012449	SND1	99	84.899	Heterocephalus_glaber_male
ENSCVAG00000010316	snd1	100	91.767	ENSHCOG00000005266	snd1	100	91.767	Hippocampus_comes
ENSCVAG00000010316	snd1	100	88.647	ENSIPUG00000013279	snd1	99	89.133	Ictalurus_punctatus
ENSCVAG00000010316	snd1	100	83.563	ENSSTOG00000002140	SND1	100	83.882	Ictidomys_tridecemlineatus
ENSCVAG00000010316	snd1	100	83.678	ENSJJAG00000009561	Snd1	100	83.991	Jaculus_jaculus
ENSCVAG00000010316	snd1	100	96.378	ENSKMAG00000016997	snd1	100	96.378	Kryptolebias_marmoratus
ENSCVAG00000010316	snd1	100	95.487	ENSLBEG00000013563	snd1	100	92.975	Labrus_bergylta
ENSCVAG00000010316	snd1	100	87.372	ENSLOCG00000015537	snd1	99	88.030	Lepisosteus_oculatus
ENSCVAG00000010316	snd1	100	84.023	ENSLAFG00000009696	SND1	99	84.505	Loxodonta_africana
ENSCVAG00000010316	snd1	100	83.793	ENSMFAG00000038114	SND1	99	85.327	Macaca_fascicularis
ENSCVAG00000010316	snd1	100	83.793	ENSMMUG00000015432	SND1	100	84.101	Macaca_mulatta
ENSCVAG00000010316	snd1	100	83.793	ENSMNEG00000039808	SND1	97	88.536	Macaca_nemestrina
ENSCVAG00000010316	snd1	100	83.678	ENSMLEG00000029040	SND1	97	88.536	Mandrillus_leucophaeus
ENSCVAG00000010316	snd1	100	94.512	ENSMAMG00000011739	snd1	100	94.512	Mastacembelus_armatus
ENSCVAG00000010316	snd1	100	94.182	ENSMZEG00005005681	snd1	100	94.182	Maylandia_zebra
ENSCVAG00000010316	snd1	100	83.678	ENSMICG00000000097	SND1	100	83.991	Microcebus_murinus
ENSCVAG00000010316	snd1	100	83.678	ENSMOCG00000005040	Snd1	100	83.991	Microtus_ochrogaster
ENSCVAG00000010316	snd1	100	93.853	ENSMMOG00000001795	snd1	100	93.853	Mola_mola
ENSCVAG00000010316	snd1	100	82.874	ENSMODG00000015182	SND1	100	83.333	Monodelphis_domestica
ENSCVAG00000010316	snd1	100	94.182	ENSMALG00000012071	snd1	100	94.182	Monopterus_albus
ENSCVAG00000010316	snd1	100	83.218	MGP_CAROLIEiJ_G0028159	Snd1	99	85.882	Mus_caroli
ENSCVAG00000010316	snd1	100	82.989	ENSMUSG00000001424	Snd1	100	83.333	Mus_musculus
ENSCVAG00000010316	snd1	100	83.218	MGP_PahariEiJ_G0021917	Snd1	100	85.882	Mus_pahari
ENSCVAG00000010316	snd1	100	83.218	MGP_SPRETEiJ_G0029159	Snd1	100	83.553	Mus_spretus
ENSCVAG00000010316	snd1	100	84.101	ENSMPUG00000006545	SND1	100	84.101	Mustela_putorius_furo
ENSCVAG00000010316	snd1	100	82.520	ENSMLUG00000017130	SND1	99	84.058	Myotis_lucifugus
ENSCVAG00000010316	snd1	100	83.563	ENSNGAG00000011186	Snd1	100	83.882	Nannospalax_galili
ENSCVAG00000010316	snd1	100	94.182	ENSNBRG00000006681	snd1	100	94.182	Neolamprologus_brichardi
ENSCVAG00000010316	snd1	100	83.793	ENSNLEG00000012263	SND1	100	85.344	Nomascus_leucogenys
ENSCVAG00000010316	snd1	91	88.889	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSCVAG00000010316	snd1	100	83.678	ENSODEG00000011502	SND1	100	83.974	Octodon_degus
ENSCVAG00000010316	snd1	100	94.072	ENSONIG00000011481	snd1	97	94.072	Oreochromis_niloticus
ENSCVAG00000010316	snd1	100	83.103	ENSOANG00000000817	SND1	99	82.967	Ornithorhynchus_anatinus
ENSCVAG00000010316	snd1	100	82.989	ENSOCUG00000001620	SND1	100	83.333	Oryctolagus_cuniculus
ENSCVAG00000010316	snd1	100	94.621	ENSORLG00000015201	snd1	100	94.621	Oryzias_latipes
ENSCVAG00000010316	snd1	100	94.841	ENSORLG00020013991	snd1	100	94.841	Oryzias_latipes_hni
ENSCVAG00000010316	snd1	100	94.841	ENSORLG00015012436	snd1	100	94.841	Oryzias_latipes_hsok
ENSCVAG00000010316	snd1	100	94.951	ENSOMEG00000006406	snd1	100	94.951	Oryzias_melastigma
ENSCVAG00000010316	snd1	100	83.601	ENSOGAG00000013356	SND1	94	83.917	Otolemur_garnettii
ENSCVAG00000010316	snd1	100	81.494	ENSOARG00000002149	SND1	100	83.089	Ovis_aries
ENSCVAG00000010316	snd1	100	83.678	ENSPPAG00000042947	SND1	99	85.214	Pan_paniscus
ENSCVAG00000010316	snd1	100	83.678	ENSPPRG00000004494	SND1	100	83.991	Panthera_pardus
ENSCVAG00000010316	snd1	100	83.563	ENSPTIG00000014214	SND1	100	83.882	Panthera_tigris_altaica
ENSCVAG00000010316	snd1	100	83.678	ENSPTRG00000023911	SND1	99	85.214	Pan_troglodytes
ENSCVAG00000010316	snd1	100	83.793	ENSPANG00000011997	SND1	99	85.327	Papio_anubis
ENSCVAG00000010316	snd1	99	86.549	ENSPKIG00000023494	snd1	99	86.150	Paramormyrops_kingsleyae
ENSCVAG00000010316	snd1	96	93.541	ENSPMGG00000003629	snd1	100	93.541	Periophthalmus_magnuspinnatus
ENSCVAG00000010316	snd1	100	83.448	ENSPEMG00000010240	Snd1	100	83.772	Peromyscus_maniculatus_bairdii
ENSCVAG00000010316	snd1	99	73.793	ENSPMAG00000007915	-	99	74.605	Petromyzon_marinus
ENSCVAG00000010316	snd1	100	83.448	ENSPCIG00000011561	SND1	100	83.882	Phascolarctos_cinereus
ENSCVAG00000010316	snd1	100	97.146	ENSPFOG00000001557	snd1	100	97.146	Poecilia_formosa
ENSCVAG00000010316	snd1	100	97.146	ENSPLAG00000018459	snd1	97	97.146	Poecilia_latipinna
ENSCVAG00000010316	snd1	100	97.366	ENSPMEG00000006803	snd1	100	97.366	Poecilia_mexicana
ENSCVAG00000010316	snd1	100	97.146	ENSPREG00000002189	snd1	100	97.146	Poecilia_reticulata
ENSCVAG00000010316	snd1	91	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSCVAG00000010316	snd1	100	73.218	ENSPCAG00000011305	SND1	99	74.311	Procavia_capensis
ENSCVAG00000010316	snd1	100	84.023	ENSPCOG00000026791	SND1	100	85.569	Propithecus_coquereli
ENSCVAG00000010316	snd1	100	81.494	ENSPVAG00000013945	SND1	100	81.908	Pteropus_vampyrus
ENSCVAG00000010316	snd1	100	94.072	ENSPNYG00000000932	snd1	100	94.072	Pundamilia_nyererei
ENSCVAG00000010316	snd1	100	89.450	ENSPNAG00000001206	snd1	99	90.440	Pygocentrus_nattereri
ENSCVAG00000010316	snd1	100	83.103	ENSRNOG00000031173	Snd1	100	83.653	Rattus_norvegicus
ENSCVAG00000010316	snd1	71	88.781	ENSRBIG00000027782	-	93	89.015	Rhinopithecus_bieti
ENSCVAG00000010316	snd1	100	83.793	ENSRROG00000033020	SND1	100	84.101	Rhinopithecus_roxellana
ENSCVAG00000010316	snd1	100	83.563	ENSSBOG00000032461	SND1	99	85.102	Saimiri_boliviensis_boliviensis
ENSCVAG00000010316	snd1	100	80.345	ENSSHAG00000015359	SND1	100	81.573	Sarcophilus_harrisii
ENSCVAG00000010316	snd1	100	87.358	ENSSFOG00015001103	snd1	99	87.582	Scleropages_formosus
ENSCVAG00000010316	snd1	100	93.633	ENSSMAG00000001932	snd1	95	93.633	Scophthalmus_maximus
ENSCVAG00000010316	snd1	100	94.951	ENSSDUG00000002699	snd1	94	94.951	Seriola_dumerili
ENSCVAG00000010316	snd1	100	87.267	ENSSLDG00000001950	snd1	100	87.267	Seriola_lalandi_dorsalis
ENSCVAG00000010316	snd1	88	80.392	ENSSARG00000004877	SND1	92	80.854	Sorex_araneus
ENSCVAG00000010316	snd1	71	81.105	ENSSPUG00000017586	SND1	97	80.782	Sphenodon_punctatus
ENSCVAG00000010316	snd1	73	94.585	ENSSPAG00000021398	snd1	99	94.585	Stegastes_partitus
ENSCVAG00000010316	snd1	100	83.563	ENSSSCG00000016590	SND1	100	83.882	Sus_scrofa
ENSCVAG00000010316	snd1	100	93.792	ENSTRUG00000014067	snd1	100	92.536	Takifugu_rubripes
ENSCVAG00000010316	snd1	100	92.975	ENSTNIG00000011019	snd1	100	92.975	Tetraodon_nigroviridis
ENSCVAG00000010316	snd1	96	79.137	ENSTBEG00000003999	SND1	100	79.529	Tupaia_belangeri
ENSCVAG00000010316	snd1	100	79.310	ENSTTRG00000006059	SND1	100	79.825	Tursiops_truncatus
ENSCVAG00000010316	snd1	67	78.886	ENSUAMG00000002820	-	89	77.285	Ursus_americanus
ENSCVAG00000010316	snd1	91	81.559	ENSUAMG00000005604	-	93	83.650	Ursus_americanus
ENSCVAG00000010316	snd1	100	83.678	ENSUMAG00000005960	SND1	100	83.991	Ursus_maritimus
ENSCVAG00000010316	snd1	77	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSCVAG00000010316	snd1	100	83.678	ENSVVUG00000007226	SND1	100	83.991	Vulpes_vulpes
ENSCVAG00000010316	snd1	98	78.984	ENSXETG00000023043	snd1	100	79.795	Xenopus_tropicalis
ENSCVAG00000010316	snd1	96	95.090	ENSXCOG00000013629	snd1	99	94.418	Xiphophorus_couchianus
ENSCVAG00000010316	snd1	100	97.695	ENSXMAG00000011469	snd1	100	97.695	Xiphophorus_maculatus