EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000010520 (Gene tree)
Gene ID: 107101340
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 11023 bases
Position: chrKL653582.1:38681-49703
Accession: 107101340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000008651	DND1_DSRM	PF14709.7	2.8e-25	1	1
ENSCVAP00000008651	RRM_1	PF00076.22	1.3e-40	1	3
ENSCVAP00000008651	RRM_1	PF00076.22	1.3e-40	2	3
ENSCVAP00000008651	RRM_1	PF00076.22	1.3e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000001253	-	1809	XM_015400217	ENSCVAP00000008651	602 (aa)	XP_015255703	-

Gene Model

Click here to download ENSCVAG00000010520's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000010520's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000010520	a1cf	91	51.091	ENSCVAG00000020144	rbm47	80	51.009
ENSCVAG00000010520	a1cf	86	63.514	ENSCVAG00000021013	rbm46	84	63.514

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000010520	a1cf	100	77.228	ENSG00000148584	A1CF	100	87.624	Homo_sapiens
ENSCVAG00000010520	a1cf	100	86.877	ENSAPOG00000008259	a1cf	100	86.545	Acanthochromis_polyacanthus
ENSCVAG00000010520	a1cf	100	75.941	ENSAMEG00000000523	A1CF	100	74.430	Ailuropoda_melanoleuca
ENSCVAG00000010520	a1cf	100	88.633	ENSACIG00000008632	a1cf	100	90.445	Amphilophus_citrinellus
ENSCVAG00000010520	a1cf	100	88.870	ENSAOCG00000023744	a1cf	100	88.538	Amphiprion_ocellaris
ENSCVAG00000010520	a1cf	100	87.541	ENSAPEG00000009537	a1cf	100	87.213	Amphiprion_percula
ENSCVAG00000010520	a1cf	100	92.525	ENSATEG00000013720	a1cf	100	92.525	Anabas_testudineus
ENSCVAG00000010520	a1cf	100	75.570	ENSAPLG00000002964	A1CF	100	74.104	Anas_platyrhynchos
ENSCVAG00000010520	a1cf	100	76.860	ENSACAG00000015269	A1CF	100	76.529	Anolis_carolinensis
ENSCVAG00000010520	a1cf	100	77.723	ENSANAG00000019974	A1CF	100	76.238	Aotus_nancymaae
ENSCVAG00000010520	a1cf	100	87.231	ENSACLG00000017428	a1cf	100	86.733	Astatotilapia_calliptera
ENSCVAG00000010520	a1cf	100	74.595	ENSAMXG00000018180	a1cf	100	73.625	Astyanax_mexicanus
ENSCVAG00000010520	a1cf	100	77.063	ENSBTAG00000021195	A1CF	100	75.743	Bos_taurus
ENSCVAG00000010520	a1cf	100	76.547	ENSCJAG00000005045	A1CF	100	75.081	Callithrix_jacchus
ENSCVAG00000010520	a1cf	100	76.230	ENSCAFG00000015581	A1CF	100	74.267	Canis_familiaris
ENSCVAG00000010520	a1cf	100	76.230	ENSCAFG00020026421	A1CF	98	82.333	Canis_lupus_dingo
ENSCVAG00000010520	a1cf	100	76.547	ENSCHIG00000020411	A1CF	100	75.244	Capra_hircus
ENSCVAG00000010520	a1cf	94	76.696	ENSTSYG00000001755	A1CF	100	75.304	Carlito_syrichta
ENSCVAG00000010520	a1cf	100	73.761	ENSCAPG00000017386	A1CF	100	75.719	Cavia_aperea
ENSCVAG00000010520	a1cf	100	75.081	ENSCPOG00000009807	A1CF	100	73.616	Cavia_porcellus
ENSCVAG00000010520	a1cf	100	76.384	ENSCCAG00000018168	A1CF	100	74.919	Cebus_capucinus
ENSCVAG00000010520	a1cf	100	77.063	ENSCATG00000043715	A1CF	100	75.578	Cercocebus_atys
ENSCVAG00000010520	a1cf	100	75.244	ENSCLAG00000010424	A1CF	100	73.290	Chinchilla_lanigera
ENSCVAG00000010520	a1cf	100	76.059	ENSCSAG00000007032	A1CF	100	74.593	Chlorocebus_sabaeus
ENSCVAG00000010520	a1cf	98	74.624	ENSCHOG00000009089	A1CF	98	73.122	Choloepus_hoffmanni
ENSCVAG00000010520	a1cf	100	76.221	ENSCPBG00000026464	A1CF	100	74.430	Chrysemys_picta_bellii
ENSCVAG00000010520	a1cf	100	76.059	ENSCANG00000038032	A1CF	100	74.593	Colobus_angolensis_palliatus
ENSCVAG00000010520	a1cf	100	75.570	ENSCGRG00001017413	A1cf	100	74.104	Cricetulus_griseus_chok1gshd
ENSCVAG00000010520	a1cf	100	74.715	ENSCGRG00000017332	A1cf	100	73.573	Cricetulus_griseus_crigri
ENSCVAG00000010520	a1cf	100	84.390	ENSCSEG00000002361	a1cf	100	84.491	Cynoglossus_semilaevis
ENSCVAG00000010520	a1cf	100	82.558	ENSDARG00000002968	a1cf	100	81.229	Danio_rerio
ENSCVAG00000010520	a1cf	100	76.059	ENSDNOG00000002829	A1CF	100	74.593	Dasypus_novemcinctus
ENSCVAG00000010520	a1cf	82	85.145	ENSETEG00000012527	A1CF	79	88.803	Echinops_telfairi
ENSCVAG00000010520	a1cf	100	76.260	ENSEASG00005012924	A1CF	100	74.797	Equus_asinus_asinus
ENSCVAG00000010520	a1cf	100	75.935	ENSECAG00000010424	A1CF	100	74.472	Equus_caballus
ENSCVAG00000010520	a1cf	79	67.647	ENSEEUG00000000013	A1CF	97	66.812	Erinaceus_europaeus
ENSCVAG00000010520	a1cf	100	80.945	ENSELUG00000003159	a1cf	100	80.130	Esox_lucius
ENSCVAG00000010520	a1cf	100	76.578	ENSFCAG00000011179	A1CF	100	75.413	Felis_catus
ENSCVAG00000010520	a1cf	100	77.558	ENSFALG00000013183	A1CF	100	75.908	Ficedula_albicollis
ENSCVAG00000010520	a1cf	100	76.238	ENSFDAG00000019371	A1CF	100	74.752	Fukomys_damarensis
ENSCVAG00000010520	a1cf	100	90.264	ENSFHEG00000019652	a1cf	96	96.094	Fundulus_heteroclitus
ENSCVAG00000010520	a1cf	100	80.000	ENSGMOG00000018943	a1cf	100	78.347	Gadus_morhua
ENSCVAG00000010520	a1cf	96	75.212	ENSGALG00000003765	A1CF	96	74.010	Gallus_gallus
ENSCVAG00000010520	a1cf	100	88.119	ENSGAFG00000014868	a1cf	100	88.119	Gambusia_affinis
ENSCVAG00000010520	a1cf	100	85.342	ENSGACG00000010241	a1cf	100	84.528	Gasterosteus_aculeatus
ENSCVAG00000010520	a1cf	96	75.042	ENSGAGG00000016508	A1CF	98	73.175	Gopherus_agassizii
ENSCVAG00000010520	a1cf	100	76.873	ENSGGOG00000009670	A1CF	100	74.756	Gorilla_gorilla
ENSCVAG00000010520	a1cf	100	89.127	ENSHBUG00000021959	a1cf	100	89.292	Haplochromis_burtoni
ENSCVAG00000010520	a1cf	100	75.570	ENSHGLG00000008955	A1CF	100	73.453	Heterocephalus_glaber_female
ENSCVAG00000010520	a1cf	100	74.919	ENSHGLG00100000518	A1CF	100	72.801	Heterocephalus_glaber_male
ENSCVAG00000010520	a1cf	100	73.473	ENSHCOG00000017669	a1cf	100	75.241	Hippocampus_comes
ENSCVAG00000010520	a1cf	89	83.456	ENSIPUG00000010367	a1cf	95	82.353	Ictalurus_punctatus
ENSCVAG00000010520	a1cf	100	90.276	ENSKMAG00000006568	a1cf	100	88.655	Kryptolebias_marmoratus
ENSCVAG00000010520	a1cf	99	88.216	ENSLBEG00000020994	a1cf	99	88.216	Labrus_bergylta
ENSCVAG00000010520	a1cf	100	79.900	ENSLACG00000008061	A1CF	100	77.558	Latimeria_chalumnae
ENSCVAG00000010520	a1cf	100	81.270	ENSLOCG00000006302	a1cf	100	79.479	Lepisosteus_oculatus
ENSCVAG00000010520	a1cf	100	76.059	ENSLAFG00000015462	A1CF	100	75.407	Loxodonta_africana
ENSCVAG00000010520	a1cf	100	77.063	ENSMFAG00000035948	A1CF	100	75.578	Macaca_fascicularis
ENSCVAG00000010520	a1cf	100	77.063	ENSMMUG00000007077	A1CF	100	75.578	Macaca_mulatta
ENSCVAG00000010520	a1cf	100	76.898	ENSMNEG00000031454	A1CF	100	75.413	Macaca_nemestrina
ENSCVAG00000010520	a1cf	100	76.059	ENSMLEG00000037223	A1CF	100	74.593	Mandrillus_leucophaeus
ENSCVAG00000010520	a1cf	100	88.962	ENSMAMG00000010402	a1cf	100	87.644	Mastacembelus_armatus
ENSCVAG00000010520	a1cf	100	86.230	ENSMZEG00005013245	a1cf	100	85.246	Maylandia_zebra
ENSCVAG00000010520	a1cf	100	75.285	ENSMGAG00000001507	A1CF	100	73.659	Meleagris_gallopavo
ENSCVAG00000010520	a1cf	100	75.081	ENSMAUG00000007422	A1cf	100	73.779	Mesocricetus_auratus
ENSCVAG00000010520	a1cf	100	76.480	ENSMICG00000003377	A1CF	100	75.822	Microcebus_murinus
ENSCVAG00000010520	a1cf	100	75.407	ENSMOCG00000021536	A1cf	100	73.941	Microtus_ochrogaster
ENSCVAG00000010520	a1cf	100	77.944	ENSMMOG00000009422	a1cf	100	77.612	Mola_mola
ENSCVAG00000010520	a1cf	89	79.143	ENSMODG00000016478	A1CF	97	77.281	Monodelphis_domestica
ENSCVAG00000010520	a1cf	100	80.858	ENSMALG00000012992	a1cf	100	80.363	Monopterus_albus
ENSCVAG00000010520	a1cf	100	76.568	MGP_CAROLIEiJ_G0022873	A1cf	100	75.083	Mus_caroli
ENSCVAG00000010520	a1cf	100	76.568	ENSMUSG00000052595	A1cf	99	82.338	Mus_musculus
ENSCVAG00000010520	a1cf	100	75.743	MGP_PahariEiJ_G0014366	A1cf	100	74.257	Mus_pahari
ENSCVAG00000010520	a1cf	100	76.490	MGP_SPRETEiJ_G0023792	A1cf	100	75.000	Mus_spretus
ENSCVAG00000010520	a1cf	100	70.358	ENSMPUG00000016971	A1CF	100	69.055	Mustela_putorius_furo
ENSCVAG00000010520	a1cf	100	75.693	ENSMLUG00000016071	A1CF	100	74.756	Myotis_lucifugus
ENSCVAG00000010520	a1cf	100	76.059	ENSNGAG00000015136	A1cf	100	74.430	Nannospalax_galili
ENSCVAG00000010520	a1cf	100	89.127	ENSNBRG00000001712	a1cf	100	89.292	Neolamprologus_brichardi
ENSCVAG00000010520	a1cf	100	76.547	ENSNLEG00000012028	A1CF	100	75.081	Nomascus_leucogenys
ENSCVAG00000010520	a1cf	94	77.273	ENSMEUG00000015909	A1CF	100	74.825	Notamacropus_eugenii
ENSCVAG00000010520	a1cf	89	68.946	ENSOPRG00000010667	A1CF	100	66.075	Ochotona_princeps
ENSCVAG00000010520	a1cf	100	89.621	ENSONIG00000019105	a1cf	100	88.962	Oreochromis_niloticus
ENSCVAG00000010520	a1cf	79	78.105	ENSOANG00000007360	A1CF	99	77.474	Ornithorhynchus_anatinus
ENSCVAG00000010520	a1cf	100	76.898	ENSOCUG00000011587	A1CF	100	75.413	Oryctolagus_cuniculus
ENSCVAG00000010520	a1cf	100	85.410	ENSORLG00000013342	a1cf	100	85.082	Oryzias_latipes
ENSCVAG00000010520	a1cf	100	86.829	ENSORLG00020000586	a1cf	100	87.154	Oryzias_latipes_hni
ENSCVAG00000010520	a1cf	100	86.829	ENSORLG00015018569	a1cf	100	87.154	Oryzias_latipes_hsok
ENSCVAG00000010520	a1cf	100	88.614	ENSOMEG00000013531	a1cf	100	87.294	Oryzias_melastigma
ENSCVAG00000010520	a1cf	100	75.407	ENSOGAG00000012884	A1CF	100	74.756	Otolemur_garnettii
ENSCVAG00000010520	a1cf	100	76.221	ENSOARG00000013695	A1CF	100	74.919	Ovis_aries
ENSCVAG00000010520	a1cf	97	75.462	ENSPPAG00000028115	A1CF	99	78.431	Pan_paniscus
ENSCVAG00000010520	a1cf	100	75.574	ENSPPRG00000012180	A1CF	100	74.430	Panthera_pardus
ENSCVAG00000010520	a1cf	100	75.574	ENSPTIG00000021223	A1CF	100	74.430	Panthera_tigris_altaica
ENSCVAG00000010520	a1cf	100	77.228	ENSPTRG00000002508	A1CF	100	75.743	Pan_troglodytes
ENSCVAG00000010520	a1cf	100	77.063	ENSPANG00000021988	A1CF	100	75.578	Papio_anubis
ENSCVAG00000010520	a1cf	100	80.000	ENSPKIG00000025176	a1cf	100	79.016	Paramormyrops_kingsleyae
ENSCVAG00000010520	a1cf	100	76.898	ENSPSIG00000010318	A1CF	100	75.248	Pelodiscus_sinensis
ENSCVAG00000010520	a1cf	98	71.622	ENSPMGG00000013359	a1cf	99	71.838	Periophthalmus_magnuspinnatus
ENSCVAG00000010520	a1cf	100	75.896	ENSPEMG00000015021	A1cf	100	74.104	Peromyscus_maniculatus_bairdii
ENSCVAG00000010520	a1cf	100	76.733	ENSPCIG00000002175	A1CF	100	75.083	Phascolarctos_cinereus
ENSCVAG00000010520	a1cf	100	94.625	ENSPFOG00000006683	a1cf	100	94.625	Poecilia_formosa
ENSCVAG00000010520	a1cf	100	94.625	ENSPFOG00000007437	-	100	94.625	Poecilia_formosa
ENSCVAG00000010520	a1cf	100	95.710	ENSPLAG00000000026	a1cf	100	95.710	Poecilia_latipinna
ENSCVAG00000010520	a1cf	100	95.710	ENSPLAG00000001210	-	100	95.710	Poecilia_latipinna
ENSCVAG00000010520	a1cf	100	85.974	ENSPMEG00000000921	a1cf	100	85.974	Poecilia_mexicana
ENSCVAG00000010520	a1cf	100	84.853	ENSPMEG00000015529	-	100	84.853	Poecilia_mexicana
ENSCVAG00000010520	a1cf	100	93.974	ENSPREG00000016298	a1cf	100	93.974	Poecilia_reticulata
ENSCVAG00000010520	a1cf	100	77.558	ENSPPYG00000002819	A1CF	100	76.073	Pongo_abelii
ENSCVAG00000010520	a1cf	80	60.499	ENSPCAG00000006463	A1CF	79	59.044	Procavia_capensis
ENSCVAG00000010520	a1cf	100	75.407	ENSPCOG00000024172	A1CF	100	74.593	Propithecus_coquereli
ENSCVAG00000010520	a1cf	100	88.293	ENSPNYG00000017944	a1cf	100	88.455	Pundamilia_nyererei
ENSCVAG00000010520	a1cf	100	82.237	ENSPNAG00000007704	a1cf	100	81.414	Pygocentrus_nattereri
ENSCVAG00000010520	a1cf	100	76.568	ENSRNOG00000033195	A1cf	100	75.083	Rattus_norvegicus
ENSCVAG00000010520	a1cf	100	70.779	ENSRBIG00000042892	A1CF	100	73.321	Rhinopithecus_bieti
ENSCVAG00000010520	a1cf	100	76.059	ENSRROG00000041398	A1CF	100	74.593	Rhinopithecus_roxellana
ENSCVAG00000010520	a1cf	100	76.797	ENSSBOG00000021930	A1CF	100	75.337	Saimiri_boliviensis_boliviensis
ENSCVAG00000010520	a1cf	100	76.733	ENSSHAG00000005096	A1CF	100	74.422	Sarcophilus_harrisii
ENSCVAG00000010520	a1cf	100	82.430	ENSSFOG00015011774	a1cf	100	81.609	Scleropages_formosus
ENSCVAG00000010520	a1cf	100	87.987	ENSSMAG00000013271	a1cf	100	87.987	Scophthalmus_maximus
ENSCVAG00000010520	a1cf	100	90.000	ENSSDUG00000013930	a1cf	100	89.836	Seriola_dumerili
ENSCVAG00000010520	a1cf	100	84.385	ENSSLDG00000004290	a1cf	100	84.385	Seriola_lalandi_dorsalis
ENSCVAG00000010520	a1cf	95	69.391	ENSSARG00000005940	A1CF	95	68.870	Sorex_araneus
ENSCVAG00000010520	a1cf	95	74.829	ENSSPUG00000006797	A1CF	95	72.945	Sphenodon_punctatus
ENSCVAG00000010520	a1cf	100	76.710	ENSSSCG00000010431	A1CF	100	75.407	Sus_scrofa
ENSCVAG00000010520	a1cf	100	76.911	ENSTGUG00000005090	A1CF	100	75.122	Taeniopygia_guttata
ENSCVAG00000010520	a1cf	100	86.179	ENSTRUG00000001982	a1cf	100	86.829	Takifugu_rubripes
ENSCVAG00000010520	a1cf	100	86.039	ENSTNIG00000003580	a1cf	100	86.039	Tetraodon_nigroviridis
ENSCVAG00000010520	a1cf	95	72.870	ENSTTRG00000013190	A1CF	94	71.652	Tursiops_truncatus
ENSCVAG00000010520	a1cf	100	76.898	ENSUAMG00000020065	A1CF	100	75.248	Ursus_americanus
ENSCVAG00000010520	a1cf	100	75.407	ENSUMAG00000011162	A1CF	100	73.941	Ursus_maritimus
ENSCVAG00000010520	a1cf	87	74.765	ENSVPAG00000006130	A1CF	86	73.070	Vicugna_pacos
ENSCVAG00000010520	a1cf	100	77.409	ENSVVUG00000002504	A1CF	100	75.413	Vulpes_vulpes
ENSCVAG00000010520	a1cf	100	71.475	ENSXETG00000006611	a1cf	100	70.328	Xenopus_tropicalis
ENSCVAG00000010520	a1cf	100	95.545	ENSXCOG00000003302	a1cf	100	95.545	Xiphophorus_couchianus
ENSCVAG00000010520	a1cf	100	94.300	ENSXMAG00000016703	a1cf	100	93.322	Xiphophorus_maculatus