EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000010561 (Gene tree)
Gene ID: 107088263
Gene Symbol: upf1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 25911 bases
Position: chrKL652711.1:349099-375009
Accession: 107088263
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000008634	UPF1_Zn_bind	PF09416.10	1.7e-74	1	1
ENSCVAP00000025589	UPF1_Zn_bind	PF09416.10	1.7e-74	1	1
ENSCVAP00000008634	ResIII	PF04851.15	3.1e-05	1	1
ENSCVAP00000025589	ResIII	PF04851.15	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000001259	-	6390	-	ENSCVAP00000025589	1102 (aa)	-	UPI0007429CF7
ENSCVAT00000001289	-	3306	XM_015380310	ENSCVAP00000008634	1101 (aa)	XP_015235796	-

Gene Model

Click here to download ENSCVAG00000010561's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000010561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000010561	upf1	100	92.239	ENSG00000005007	UPF1	100	92.328	Homo_sapiens
ENSCVAG00000010561	upf1	100	98.274	ENSAPOG00000010916	-	100	98.274	Acanthochromis_polyacanthus
ENSCVAG00000010561	upf1	100	92.676	ENSAPOG00000023773	upf1	100	92.676	Acanthochromis_polyacanthus
ENSCVAG00000010561	upf1	100	91.659	ENSAMEG00000011474	UPF1	100	91.748	Ailuropoda_melanoleuca
ENSCVAG00000010561	upf1	93	97.760	ENSACIG00000010985	-	100	97.760	Amphilophus_citrinellus
ENSCVAG00000010561	upf1	100	93.188	ENSACIG00000019949	upf1	100	93.188	Amphilophus_citrinellus
ENSCVAG00000010561	upf1	100	98.183	ENSAOCG00000006352	-	100	98.183	Amphiprion_ocellaris
ENSCVAG00000010561	upf1	100	92.189	ENSAOCG00000018519	upf1	100	92.473	Amphiprion_ocellaris
ENSCVAG00000010561	upf1	100	98.093	ENSAPEG00000006292	-	100	98.093	Amphiprion_percula
ENSCVAG00000010561	upf1	100	92.189	ENSAPEG00000016344	upf1	100	92.473	Amphiprion_percula
ENSCVAG00000010561	upf1	100	98.002	ENSATEG00000016606	-	100	98.002	Anabas_testudineus
ENSCVAG00000010561	upf1	100	91.324	ENSATEG00000017867	upf1	100	91.860	Anabas_testudineus
ENSCVAG00000010561	upf1	95	93.655	ENSAPLG00000009175	UPF1	100	93.655	Anas_platyrhynchos
ENSCVAG00000010561	upf1	95	92.308	ENSANAG00000024107	UPF1	95	92.308	Aotus_nancymaae
ENSCVAG00000010561	upf1	100	98.094	ENSACLG00000022630	-	100	98.094	Astatotilapia_calliptera
ENSCVAG00000010561	upf1	100	92.916	ENSACLG00000007181	upf1	100	92.916	Astatotilapia_calliptera
ENSCVAG00000010561	upf1	100	94.288	ENSAMXG00000042187	upf1	100	93.835	Astyanax_mexicanus
ENSCVAG00000010561	upf1	100	91.674	ENSBTAG00000020922	UPF1	100	91.763	Bos_taurus
ENSCVAG00000010561	upf1	81	55.345	WBGene00004880	smg-2	99	49.677	Caenorhabditis_elegans
ENSCVAG00000010561	upf1	100	91.431	ENSCJAG00000019627	UPF1	100	91.519	Callithrix_jacchus
ENSCVAG00000010561	upf1	100	91.431	ENSCAFG00000014578	UPF1	100	91.519	Canis_familiaris
ENSCVAG00000010561	upf1	100	92.239	ENSCAFG00020012347	UPF1	100	92.328	Canis_lupus_dingo
ENSCVAG00000010561	upf1	100	92.487	ENSCHIG00000011018	UPF1	100	92.576	Capra_hircus
ENSCVAG00000010561	upf1	95	93.447	ENSTSYG00000008877	UPF1	98	93.447	Carlito_syrichta
ENSCVAG00000010561	upf1	96	92.770	ENSCAPG00000005758	UPF1	95	93.352	Cavia_aperea
ENSCVAG00000010561	upf1	100	92.543	ENSCPOG00000025463	UPF1	100	92.543	Cavia_porcellus
ENSCVAG00000010561	upf1	100	92.239	ENSCCAG00000032175	UPF1	100	92.328	Cebus_capucinus
ENSCVAG00000010561	upf1	94	93.893	ENSCATG00000040306	UPF1	97	93.893	Cercocebus_atys
ENSCVAG00000010561	upf1	95	93.637	ENSCLAG00000004037	UPF1	99	93.637	Chinchilla_lanigera
ENSCVAG00000010561	upf1	100	92.239	ENSCSAG00000005276	UPF1	100	92.328	Chlorocebus_sabaeus
ENSCVAG00000010561	upf1	100	92.377	ENSCPBG00000012513	UPF1	100	92.377	Chrysemys_picta_bellii
ENSCVAG00000010561	upf1	77	79.391	ENSCING00000021399	-	99	78.429	Ciona_intestinalis
ENSCVAG00000010561	upf1	99	72.662	ENSCSAVG00000006533	-	99	72.735	Ciona_savignyi
ENSCVAG00000010561	upf1	95	93.637	ENSCANG00000029819	UPF1	97	93.637	Colobus_angolensis_palliatus
ENSCVAG00000010561	upf1	100	92.025	ENSCGRG00001021067	Upf1	100	92.115	Cricetulus_griseus_chok1gshd
ENSCVAG00000010561	upf1	95	92.972	ENSCGRG00000013480	Upf1	98	92.972	Cricetulus_griseus_crigri
ENSCVAG00000010561	upf1	100	88.033	ENSCSEG00000017239	upf1	100	87.783	Cynoglossus_semilaevis
ENSCVAG00000010561	upf1	100	97.548	ENSCSEG00000016159	-	100	97.548	Cynoglossus_semilaevis
ENSCVAG00000010561	upf1	100	94.016	ENSDARG00000016302	upf1	100	94.288	Danio_rerio
ENSCVAG00000010561	upf1	95	91.073	ENSDORG00000009984	Upf1	95	91.073	Dipodomys_ordii
ENSCVAG00000010561	upf1	86	71.504	FBgn0030354	Upf1	81	70.954	Drosophila_melanogaster
ENSCVAG00000010561	upf1	54	86.446	ENSEBUG00000010069	upf1	96	86.446	Eptatretus_burgeri
ENSCVAG00000010561	upf1	100	92.397	ENSEASG00005006549	UPF1	100	92.487	Equus_asinus_asinus
ENSCVAG00000010561	upf1	100	92.397	ENSECAG00000010639	UPF1	100	92.487	Equus_caballus
ENSCVAG00000010561	upf1	100	94.590	ENSELUG00000012916	-	100	93.868	Esox_lucius
ENSCVAG00000010561	upf1	100	92.419	ENSELUG00000020917	upf1	100	91.968	Esox_lucius
ENSCVAG00000010561	upf1	100	91.343	ENSFCAG00000009757	UPF1	100	91.431	Felis_catus
ENSCVAG00000010561	upf1	95	93.994	ENSFALG00000009312	UPF1	96	93.994	Ficedula_albicollis
ENSCVAG00000010561	upf1	95	93.542	ENSFDAG00000014816	UPF1	99	93.542	Fukomys_damarensis
ENSCVAG00000010561	upf1	86	99.252	ENSFHEG00000016276	-	96	99.252	Fundulus_heteroclitus
ENSCVAG00000010561	upf1	100	89.257	ENSFHEG00000006428	upf1	100	88.998	Fundulus_heteroclitus
ENSCVAG00000010561	upf1	100	93.441	ENSGMOG00000007541	upf1	100	93.980	Gadus_morhua
ENSCVAG00000010561	upf1	100	92.315	ENSGALG00000003220	UPF1	100	92.225	Gallus_gallus
ENSCVAG00000010561	upf1	100	99.183	ENSGAFG00000004831	upf1	100	99.183	Gambusia_affinis
ENSCVAG00000010561	upf1	63	94.524	ENSGAFG00000015443	-	85	94.524	Gambusia_affinis
ENSCVAG00000010561	upf1	100	92.883	ENSGAGG00000022217	UPF1	100	92.973	Gopherus_agassizii
ENSCVAG00000010561	upf1	95	94.530	ENSGGOG00000002608	UPF1	99	94.530	Gorilla_gorilla
ENSCVAG00000010561	upf1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCVAG00000010561	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCVAG00000010561	upf1	100	91.166	ENSHGLG00000010900	UPF1	100	91.254	Heterocephalus_glaber_female
ENSCVAG00000010561	upf1	95	91.738	ENSHGLG00100005904	UPF1	96	91.738	Heterocephalus_glaber_male
ENSCVAG00000010561	upf1	100	97.187	ENSHCOG00000008918	upf1	100	97.187	Hippocampus_comes
ENSCVAG00000010561	upf1	100	94.288	ENSIPUG00000005108	UPF1	100	93.835	Ictalurus_punctatus
ENSCVAG00000010561	upf1	100	92.239	ENSSTOG00000009196	UPF1	100	92.328	Ictidomys_tridecemlineatus
ENSCVAG00000010561	upf1	100	91.378	ENSJJAG00000023151	Upf1	100	91.467	Jaculus_jaculus
ENSCVAG00000010561	upf1	100	98.728	ENSKMAG00000004962	upf1	100	98.728	Kryptolebias_marmoratus
ENSCVAG00000010561	upf1	100	91.308	ENSLBEG00000014862	upf1	100	91.756	Labrus_bergylta
ENSCVAG00000010561	upf1	100	97.550	ENSLBEG00000027848	-	100	97.550	Labrus_bergylta
ENSCVAG00000010561	upf1	63	94.269	ENSLACG00000008482	UPF1	100	94.269	Latimeria_chalumnae
ENSCVAG00000010561	upf1	100	95.186	ENSLOCG00000002072	upf1	100	95.186	Lepisosteus_oculatus
ENSCVAG00000010561	upf1	100	91.062	ENSLAFG00000014963	UPF1	100	91.150	Loxodonta_africana
ENSCVAG00000010561	upf1	100	92.082	ENSMFAG00000037748	UPF1	100	92.171	Macaca_fascicularis
ENSCVAG00000010561	upf1	100	91.837	ENSMMUG00000023286	UPF1	100	91.925	Macaca_mulatta
ENSCVAG00000010561	upf1	100	92.082	ENSMNEG00000000046	UPF1	100	92.171	Macaca_nemestrina
ENSCVAG00000010561	upf1	95	93.637	ENSMLEG00000028404	UPF1	99	93.637	Mandrillus_leucophaeus
ENSCVAG00000010561	upf1	100	91.592	ENSMAMG00000006229	upf1	100	92.129	Mastacembelus_armatus
ENSCVAG00000010561	upf1	100	97.731	ENSMAMG00000006231	-	100	97.731	Mastacembelus_armatus
ENSCVAG00000010561	upf1	100	98.094	ENSMZEG00005016386	-	100	98.094	Maylandia_zebra
ENSCVAG00000010561	upf1	100	91.914	ENSMZEG00005003489	upf1	100	92.183	Maylandia_zebra
ENSCVAG00000010561	upf1	95	93.264	ENSMGAG00000004745	UPF1	100	93.264	Meleagris_gallopavo
ENSCVAG00000010561	upf1	95	92.972	ENSMAUG00000011398	Upf1	95	92.972	Mesocricetus_auratus
ENSCVAG00000010561	upf1	100	92.150	ENSMICG00000001659	UPF1	100	92.239	Microcebus_murinus
ENSCVAG00000010561	upf1	100	91.216	ENSMOCG00000005699	Upf1	100	91.393	Microtus_ochrogaster
ENSCVAG00000010561	upf1	100	91.916	ENSMMOG00000007881	upf1	100	92.287	Mola_mola
ENSCVAG00000010561	upf1	95	95.885	ENSMMOG00000007537	-	99	95.885	Mola_mola
ENSCVAG00000010561	upf1	100	91.278	ENSMODG00000003689	UPF1	100	91.454	Monodelphis_domestica
ENSCVAG00000010561	upf1	100	95.928	ENSMALG00000018100	-	100	95.928	Monopterus_albus
ENSCVAG00000010561	upf1	100	92.189	ENSMALG00000000144	upf1	100	92.189	Monopterus_albus
ENSCVAG00000010561	upf1	100	91.935	MGP_CAROLIEiJ_G0031142	Upf1	100	92.025	Mus_caroli
ENSCVAG00000010561	upf1	100	91.935	ENSMUSG00000058301	Upf1	100	92.025	Mus_musculus
ENSCVAG00000010561	upf1	100	91.935	MGP_PahariEiJ_G0021607	Upf1	100	92.025	Mus_pahari
ENSCVAG00000010561	upf1	100	91.935	MGP_SPRETEiJ_G0032260	Upf1	100	92.025	Mus_spretus
ENSCVAG00000010561	upf1	100	92.239	ENSMPUG00000015516	UPF1	100	92.328	Mustela_putorius_furo
ENSCVAG00000010561	upf1	99	92.032	ENSMLUG00000012122	UPF1	99	92.122	Myotis_lucifugus
ENSCVAG00000010561	upf1	100	90.973	ENSNGAG00000024107	Upf1	100	91.062	Nannospalax_galili
ENSCVAG00000010561	upf1	100	91.099	ENSNBRG00000000670	upf1	100	91.099	Neolamprologus_brichardi
ENSCVAG00000010561	upf1	100	94.488	ENSNBRG00000022069	-	100	97.184	Neolamprologus_brichardi
ENSCVAG00000010561	upf1	95	87.844	ENSNLEG00000006062	UPF1	99	87.844	Nomascus_leucogenys
ENSCVAG00000010561	upf1	83	89.062	ENSMEUG00000014146	-	83	89.062	Notamacropus_eugenii
ENSCVAG00000010561	upf1	95	87.428	ENSOPRG00000014018	UPF1	99	87.428	Ochotona_princeps
ENSCVAG00000010561	upf1	100	92.716	ENSODEG00000012426	UPF1	100	92.716	Octodon_degus
ENSCVAG00000010561	upf1	100	92.093	ENSONIG00000010452	upf1	100	92.363	Oreochromis_niloticus
ENSCVAG00000010561	upf1	100	98.185	ENSONIG00000012729	-	100	98.185	Oreochromis_niloticus
ENSCVAG00000010561	upf1	100	91.150	ENSOANG00000004568	UPF1	100	91.062	Ornithorhynchus_anatinus
ENSCVAG00000010561	upf1	100	97.366	ENSORLG00000008453	upf1	100	97.366	Oryzias_latipes
ENSCVAG00000010561	upf1	100	97.278	ENSORLG00020014758	upf1	100	97.278	Oryzias_latipes_hni
ENSCVAG00000010561	upf1	100	97.278	ENSORLG00015010165	upf1	100	97.278	Oryzias_latipes_hsok
ENSCVAG00000010561	upf1	100	97.820	ENSOMEG00000003665	upf1	100	97.820	Oryzias_melastigma
ENSCVAG00000010561	upf1	100	92.328	ENSOGAG00000012866	UPF1	100	92.417	Otolemur_garnettii
ENSCVAG00000010561	upf1	96	90.625	ENSOARG00000010739	UPF1	100	90.441	Ovis_aries
ENSCVAG00000010561	upf1	95	93.472	ENSPPAG00000043884	UPF1	96	93.472	Pan_paniscus
ENSCVAG00000010561	upf1	100	91.343	ENSPPRG00000023470	UPF1	100	91.431	Panthera_pardus
ENSCVAG00000010561	upf1	95	92.146	ENSPTIG00000010159	UPF1	99	92.146	Panthera_tigris_altaica
ENSCVAG00000010561	upf1	100	92.082	ENSPTRG00000010721	UPF1	100	92.171	Pan_troglodytes
ENSCVAG00000010561	upf1	100	92.082	ENSPANG00000008847	UPF1	100	92.171	Papio_anubis
ENSCVAG00000010561	upf1	91	94.940	ENSPKIG00000006069	upf1	95	95.871	Paramormyrops_kingsleyae
ENSCVAG00000010561	upf1	70	93.481	ENSPSIG00000009491	UPF1	100	93.481	Pelodiscus_sinensis
ENSCVAG00000010561	upf1	100	90.769	ENSPMGG00000017327	upf1	100	91.131	Periophthalmus_magnuspinnatus
ENSCVAG00000010561	upf1	100	91.216	ENSPEMG00000001085	Upf1	100	91.304	Peromyscus_maniculatus_bairdii
ENSCVAG00000010561	upf1	100	87.838	ENSPMAG00000001206	upf1	100	87.838	Petromyzon_marinus
ENSCVAG00000010561	upf1	100	92.589	ENSPCIG00000006156	UPF1	100	92.679	Phascolarctos_cinereus
ENSCVAG00000010561	upf1	100	90.909	ENSPLAG00000018155	-	100	90.369	Poecilia_latipinna
ENSCVAG00000010561	upf1	100	99.273	ENSPLAG00000016232	-	100	99.273	Poecilia_latipinna
ENSCVAG00000010561	upf1	100	99.274	ENSPMEG00000016319	-	100	99.274	Poecilia_mexicana
ENSCVAG00000010561	upf1	100	91.478	ENSPMEG00000011443	-	100	91.099	Poecilia_mexicana
ENSCVAG00000010561	upf1	100	91.195	ENSPREG00000009940	upf1	100	90.746	Poecilia_reticulata
ENSCVAG00000010561	upf1	100	99.001	ENSPREG00000011247	-	100	99.001	Poecilia_reticulata
ENSCVAG00000010561	upf1	100	86.572	ENSPPYG00000009752	UPF1	100	86.396	Pongo_abelii
ENSCVAG00000010561	upf1	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSCVAG00000010561	upf1	100	91.829	ENSPCOG00000023813	UPF1	100	91.918	Propithecus_coquereli
ENSCVAG00000010561	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCVAG00000010561	upf1	100	91.914	ENSPNYG00000003694	upf1	100	92.183	Pundamilia_nyererei
ENSCVAG00000010561	upf1	100	98.185	ENSPNYG00000016731	-	100	98.185	Pundamilia_nyererei
ENSCVAG00000010561	upf1	100	94.016	ENSPNAG00000025614	upf1	100	93.563	Pygocentrus_nattereri
ENSCVAG00000010561	upf1	100	91.935	ENSRNOG00000020134	Upf1	100	92.025	Rattus_norvegicus
ENSCVAG00000010561	upf1	95	91.263	ENSRBIG00000013894	UPF1	98	94.536	Rhinopithecus_bieti
ENSCVAG00000010561	upf1	95	93.637	ENSRROG00000040935	UPF1	98	94.536	Rhinopithecus_roxellana
ENSCVAG00000010561	upf1	72	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSCVAG00000010561	upf1	94	93.893	ENSSBOG00000023632	UPF1	96	93.893	Saimiri_boliviensis_boliviensis
ENSCVAG00000010561	upf1	95	93.649	ENSSHAG00000010499	UPF1	100	93.649	Sarcophilus_harrisii
ENSCVAG00000010561	upf1	100	95.191	ENSSFOG00015021095	upf1	100	95.191	Scleropages_formosus
ENSCVAG00000010561	upf1	100	91.039	ENSSMAG00000005055	upf1	100	91.756	Scophthalmus_maximus
ENSCVAG00000010561	upf1	100	97.822	ENSSMAG00000021018	-	100	97.822	Scophthalmus_maximus
ENSCVAG00000010561	upf1	100	91.413	ENSSDUG00000013320	upf1	100	92.039	Seriola_dumerili
ENSCVAG00000010561	upf1	100	98.367	ENSSDUG00000009629	-	100	98.367	Seriola_dumerili
ENSCVAG00000010561	upf1	100	98.367	ENSSLDG00000006878	-	100	98.367	Seriola_lalandi_dorsalis
ENSCVAG00000010561	upf1	100	92.238	ENSSLDG00000020868	upf1	100	92.690	Seriola_lalandi_dorsalis
ENSCVAG00000010561	upf1	100	92.716	ENSSPUG00000010538	UPF1	100	92.806	Sphenodon_punctatus
ENSCVAG00000010561	upf1	100	98.093	ENSSPAG00000011521	-	100	98.093	Stegastes_partitus
ENSCVAG00000010561	upf1	100	90.670	ENSSPAG00000000003	upf1	100	90.554	Stegastes_partitus
ENSCVAG00000010561	upf1	100	92.487	ENSSSCG00000039301	UPF1	99	94.349	Sus_scrofa
ENSCVAG00000010561	upf1	82	86.596	ENSTGUG00000001057	UPF1	100	90.680	Taeniopygia_guttata
ENSCVAG00000010561	upf1	100	96.549	ENSTRUG00000005131	-	100	96.549	Takifugu_rubripes
ENSCVAG00000010561	upf1	100	92.105	ENSTRUG00000000150	upf1	100	92.105	Takifugu_rubripes
ENSCVAG00000010561	upf1	100	88.909	ENSTTRG00000011544	UPF1	100	88.909	Tursiops_truncatus
ENSCVAG00000010561	upf1	100	92.150	ENSUAMG00000007093	UPF1	100	92.239	Ursus_americanus
ENSCVAG00000010561	upf1	99	90.463	ENSUMAG00000006652	UPF1	99	95.031	Ursus_maritimus
ENSCVAG00000010561	upf1	100	92.239	ENSVVUG00000007797	UPF1	100	92.328	Vulpes_vulpes
ENSCVAG00000010561	upf1	100	80.000	ENSXETG00000013602	upf1	100	80.000	Xenopus_tropicalis
ENSCVAG00000010561	upf1	97	90.977	ENSXCOG00000015275	-	96	90.883	Xiphophorus_couchianus
ENSCVAG00000010561	upf1	94	99.128	ENSXCOG00000005764	-	100	99.128	Xiphophorus_couchianus
ENSCVAG00000010561	upf1	100	91.190	ENSXMAG00000001703	-	100	91.099	Xiphophorus_maculatus
ENSCVAG00000010561	upf1	100	99.093	ENSXMAG00000002540	-	100	99.093	Xiphophorus_maculatus