EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000010601 (Gene tree)
Gene ID: 107088255
Gene Symbol: lsm4 (1 of many)
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 6752 bases
Position: chrKL652711.1:323328-330079
Accession: 107088255
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000008739	LSM	PF01423.22	1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000001113	-	1284	XM_015380299	ENSCVAP00000008739	143 (aa)	XP_015235785	UPI0007428E03

Gene Model

Click here to download ENSCVAG00000010601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000010601's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000010601	lsm4	52	33.333	ENSCVAG00000001536	oscp1a	57	33.333
ENSCVAG00000010601	lsm4	90	100.000	ENSCVAG00000021828	lsm4	98	100.000
ENSCVAG00000010601	lsm4	68	31.000	ENSCVAG00000015394	si:ch73-14h10.2	73	34.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000010601	lsm4	62	97.727	ENSG00000130520	LSM4	99	77.536	Homo_sapiens
ENSCVAG00000010601	lsm4	100	89.404	ENSAPOG00000005643	lsm4	100	89.404	Acanthochromis_polyacanthus
ENSCVAG00000010601	lsm4	61	97.701	ENSAMEG00000011162	LSM4	93	77.372	Ailuropoda_melanoleuca
ENSCVAG00000010601	lsm4	100	91.216	ENSAOCG00000006414	lsm4	100	91.216	Amphiprion_ocellaris
ENSCVAG00000010601	lsm4	100	90.604	ENSAPEG00000006238	lsm4	100	90.604	Amphiprion_percula
ENSCVAG00000010601	lsm4	100	89.474	ENSATEG00000016559	lsm4	100	89.474	Anabas_testudineus
ENSCVAG00000010601	lsm4	62	97.727	ENSANAG00000034659	LSM4	99	77.536	Aotus_nancymaae
ENSCVAG00000010601	lsm4	100	91.837	ENSACLG00000022738	lsm4	100	91.837	Astatotilapia_calliptera
ENSCVAG00000010601	lsm4	100	90.972	ENSAMXG00000016932	lsm4	100	90.278	Astyanax_mexicanus
ENSCVAG00000010601	lsm4	62	97.727	ENSBTAG00000008578	LSM4	99	77.536	Bos_taurus
ENSCVAG00000010601	lsm4	58	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSCVAG00000010601	lsm4	62	97.727	ENSCJAG00000014171	LSM4	99	77.536	Callithrix_jacchus
ENSCVAG00000010601	lsm4	62	97.727	ENSCAFG00000014900	LSM4	90	77.536	Canis_familiaris
ENSCVAG00000010601	lsm4	62	97.727	ENSCAFG00020012137	LSM4	99	77.536	Canis_lupus_dingo
ENSCVAG00000010601	lsm4	61	97.701	ENSCHIG00000010928	LSM4	90	77.372	Capra_hircus
ENSCVAG00000010601	lsm4	62	96.591	ENSTSYG00000030906	LSM4	99	76.812	Carlito_syrichta
ENSCVAG00000010601	lsm4	62	96.591	ENSCAPG00000014140	LSM4	96	77.778	Cavia_aperea
ENSCVAG00000010601	lsm4	62	96.591	ENSCPOG00000024117	LSM4	96	77.778	Cavia_porcellus
ENSCVAG00000010601	lsm4	62	97.727	ENSCCAG00000036308	LSM4	99	77.536	Cebus_capucinus
ENSCVAG00000010601	lsm4	62	97.727	ENSCATG00000029311	LSM4	99	77.536	Cercocebus_atys
ENSCVAG00000010601	lsm4	62	97.727	ENSCLAG00000010828	LSM4	99	76.812	Chinchilla_lanigera
ENSCVAG00000010601	lsm4	62	97.727	ENSCSAG00000005370	LSM4	99	77.536	Chlorocebus_sabaeus
ENSCVAG00000010601	lsm4	62	98.864	ENSCPBG00000012925	LSM4	96	83.824	Chrysemys_picta_bellii
ENSCVAG00000010601	lsm4	60	94.186	ENSCING00000007519	-	72	93.478	Ciona_intestinalis
ENSCVAG00000010601	lsm4	60	94.186	ENSCSAVG00000008596	-	78	88.660	Ciona_savignyi
ENSCVAG00000010601	lsm4	62	97.727	ENSCANG00000043686	LSM4	99	77.536	Colobus_angolensis_palliatus
ENSCVAG00000010601	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	75.362	Cricetulus_griseus_chok1gshd
ENSCVAG00000010601	lsm4	61	95.402	ENSCGRG00000009398	Lsm4	99	75.182	Cricetulus_griseus_crigri
ENSCVAG00000010601	lsm4	100	84.615	ENSCSEG00000016127	lsm4	100	95.105	Cynoglossus_semilaevis
ENSCVAG00000010601	lsm4	96	86.806	ENSDARG00000023852	lsm4	99	81.690	Danio_rerio
ENSCVAG00000010601	lsm4	62	97.727	ENSDORG00000024225	Lsm4	99	77.536	Dipodomys_ordii
ENSCVAG00000010601	lsm4	70	81.000	FBgn0032240	CG17768	58	86.667	Drosophila_melanogaster
ENSCVAG00000010601	lsm4	51	95.890	ENSETEG00000007762	-	98	74.400	Echinops_telfairi
ENSCVAG00000010601	lsm4	52	93.333	ENSEBUG00000003639	-	64	78.125	Eptatretus_burgeri
ENSCVAG00000010601	lsm4	62	97.727	ENSECAG00000010141	LSM4	56	77.536	Equus_caballus
ENSCVAG00000010601	lsm4	93	91.729	ENSELUG00000012821	lsm4	100	91.729	Esox_lucius
ENSCVAG00000010601	lsm4	62	97.727	ENSFCAG00000040580	LSM4	99	77.536	Felis_catus
ENSCVAG00000010601	lsm4	61	98.851	ENSFALG00000009478	LSM4	96	88.148	Ficedula_albicollis
ENSCVAG00000010601	lsm4	61	97.701	ENSFDAG00000010124	LSM4	99	77.372	Fukomys_damarensis
ENSCVAG00000010601	lsm4	99	82.313	ENSGMOG00000007729	lsm4	99	81.081	Gadus_morhua
ENSCVAG00000010601	lsm4	62	98.864	ENSGALG00000003385	LSM4	96	88.235	Gallus_gallus
ENSCVAG00000010601	lsm4	100	95.804	ENSGAFG00000004903	lsm4	97	93.750	Gambusia_affinis
ENSCVAG00000010601	lsm4	100	84.667	ENSGACG00000008140	lsm4	100	87.333	Gasterosteus_aculeatus
ENSCVAG00000010601	lsm4	62	98.864	ENSGAGG00000017812	LSM4	96	83.824	Gopherus_agassizii
ENSCVAG00000010601	lsm4	62	97.727	ENSGGOG00000012914	-	99	77.536	Gorilla_gorilla
ENSCVAG00000010601	lsm4	100	92.466	ENSHBUG00000008858	lsm4	80	92.466	Haplochromis_burtoni
ENSCVAG00000010601	lsm4	97	77.536	ENSHGLG00000006568	LSM4	99	77.536	Heterocephalus_glaber_female
ENSCVAG00000010601	lsm4	64	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSCVAG00000010601	lsm4	100	95.105	ENSHCOG00000008819	lsm4	100	95.105	Hippocampus_comes
ENSCVAG00000010601	lsm4	100	90.278	ENSIPUG00000005368	Lsm4	100	89.583	Ictalurus_punctatus
ENSCVAG00000010601	lsm4	62	97.727	ENSSTOG00000016494	LSM4	99	77.536	Ictidomys_tridecemlineatus
ENSCVAG00000010601	lsm4	62	95.455	ENSJJAG00000017420	Lsm4	99	76.087	Jaculus_jaculus
ENSCVAG00000010601	lsm4	100	95.139	ENSKMAG00000005073	lsm4	100	95.139	Kryptolebias_marmoratus
ENSCVAG00000010601	lsm4	100	90.604	ENSLBEG00000027930	lsm4	100	90.604	Labrus_bergylta
ENSCVAG00000010601	lsm4	97	82.857	ENSLACG00000015861	LSM4	99	86.620	Latimeria_chalumnae
ENSCVAG00000010601	lsm4	89	92.188	ENSLOCG00000002025	lsm4	100	87.500	Lepisosteus_oculatus
ENSCVAG00000010601	lsm4	61	96.552	ENSLAFG00000017459	LSM4	98	76.978	Loxodonta_africana
ENSCVAG00000010601	lsm4	62	97.727	ENSMFAG00000031194	LSM4	99	77.536	Macaca_fascicularis
ENSCVAG00000010601	lsm4	62	97.727	ENSMMUG00000004405	LSM4	99	77.536	Macaca_mulatta
ENSCVAG00000010601	lsm4	62	97.727	ENSMNEG00000042899	LSM4	99	77.536	Macaca_nemestrina
ENSCVAG00000010601	lsm4	62	97.727	ENSMLEG00000027948	LSM4	99	77.536	Mandrillus_leucophaeus
ENSCVAG00000010601	lsm4	100	93.706	ENSMAMG00000006190	lsm4	100	93.706	Mastacembelus_armatus
ENSCVAG00000010601	lsm4	100	92.466	ENSMZEG00005016420	lsm4	100	92.466	Maylandia_zebra
ENSCVAG00000010601	lsm4	94	78.676	ENSMGAG00000004976	LSM4	96	83.088	Meleagris_gallopavo
ENSCVAG00000010601	lsm4	69	94.949	ENSMICG00000000222	LSM4	99	76.812	Microcebus_murinus
ENSCVAG00000010601	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	76.087	Microtus_ochrogaster
ENSCVAG00000010601	lsm4	51	98.630	ENSMODG00000015044	-	98	76.000	Monodelphis_domestica
ENSCVAG00000010601	lsm4	100	93.706	ENSMALG00000018159	lsm4	100	93.706	Monopterus_albus
ENSCVAG00000010601	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	76.087	Mus_caroli
ENSCVAG00000010601	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSCVAG00000010601	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	76.087	Mus_pahari
ENSCVAG00000010601	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	76.087	Mus_spretus
ENSCVAG00000010601	lsm4	62	97.727	ENSMPUG00000015589	LSM4	99	77.536	Mustela_putorius_furo
ENSCVAG00000010601	lsm4	61	97.701	ENSMLUG00000004010	LSM4	98	77.372	Myotis_lucifugus
ENSCVAG00000010601	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	76.087	Nannospalax_galili
ENSCVAG00000010601	lsm4	76	96.296	ENSNBRG00000022150	lsm4	67	96.296	Neolamprologus_brichardi
ENSCVAG00000010601	lsm4	51	94.521	ENSMEUG00000013229	LSM4	98	72.000	Notamacropus_eugenii
ENSCVAG00000010601	lsm4	54	97.403	ENSOPRG00000005575	LSM4	98	74.797	Ochotona_princeps
ENSCVAG00000010601	lsm4	62	97.727	ENSODEG00000020549	-	99	77.536	Octodon_degus
ENSCVAG00000010601	lsm4	62	87.500	ENSODEG00000004519	-	99	69.565	Octodon_degus
ENSCVAG00000010601	lsm4	97	61.429	ENSODEG00000011712	-	68	60.440	Octodon_degus
ENSCVAG00000010601	lsm4	100	91.837	ENSONIG00000012724	lsm4	100	91.837	Oreochromis_niloticus
ENSCVAG00000010601	lsm4	61	93.407	ENSOANG00000007434	LSM4	88	92.157	Ornithorhynchus_anatinus
ENSCVAG00000010601	lsm4	100	93.056	ENSORLG00000008391	lsm4	100	93.056	Oryzias_latipes
ENSCVAG00000010601	lsm4	100	93.056	ENSORLG00020014829	lsm4	100	93.056	Oryzias_latipes_hni
ENSCVAG00000010601	lsm4	100	92.361	ENSORLG00015010205	lsm4	100	92.361	Oryzias_latipes_hsok
ENSCVAG00000010601	lsm4	100	93.056	ENSOMEG00000003606	lsm4	100	93.056	Oryzias_melastigma
ENSCVAG00000010601	lsm4	69	94.898	ENSOGAG00000027992	LSM4	99	72.414	Otolemur_garnettii
ENSCVAG00000010601	lsm4	61	97.701	ENSOARG00000012553	LSM4	95	76.230	Ovis_aries
ENSCVAG00000010601	lsm4	62	97.727	ENSPPAG00000044045	-	99	77.536	Pan_paniscus
ENSCVAG00000010601	lsm4	62	97.727	ENSPPRG00000018264	LSM4	99	77.536	Panthera_pardus
ENSCVAG00000010601	lsm4	61	97.701	ENSPTIG00000006306	LSM4	99	77.372	Panthera_tigris_altaica
ENSCVAG00000010601	lsm4	62	97.727	ENSPTRG00000031470	LSM4	99	77.536	Pan_troglodytes
ENSCVAG00000010601	lsm4	62	97.727	ENSPANG00000014399	LSM4	99	77.536	Papio_anubis
ENSCVAG00000010601	lsm4	100	89.583	ENSPKIG00000006154	lsm4	100	89.583	Paramormyrops_kingsleyae
ENSCVAG00000010601	lsm4	61	98.851	ENSPSIG00000012358	LSM4	96	87.407	Pelodiscus_sinensis
ENSCVAG00000010601	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	76.087	Peromyscus_maniculatus_bairdii
ENSCVAG00000010601	lsm4	100	95.105	ENSPFOG00000000570	lsm4	76	95.105	Poecilia_formosa
ENSCVAG00000010601	lsm4	100	95.105	ENSPLAG00000016267	lsm4	100	95.105	Poecilia_latipinna
ENSCVAG00000010601	lsm4	100	95.105	ENSPMEG00000016378	lsm4	100	95.105	Poecilia_mexicana
ENSCVAG00000010601	lsm4	100	95.804	ENSPREG00000011290	lsm4	76	95.804	Poecilia_reticulata
ENSCVAG00000010601	lsm4	62	97.727	ENSPPYG00000009736	LSM4	99	77.536	Pongo_abelii
ENSCVAG00000010601	lsm4	51	95.890	ENSPCAG00000008513	LSM4	98	74.400	Procavia_capensis
ENSCVAG00000010601	lsm4	69	94.949	ENSPCOG00000019837	LSM4	99	76.812	Propithecus_coquereli
ENSCVAG00000010601	lsm4	62	97.727	ENSPVAG00000015383	LSM4	99	77.536	Pteropus_vampyrus
ENSCVAG00000010601	lsm4	100	92.466	ENSPNYG00000016794	lsm4	100	92.466	Pundamilia_nyererei
ENSCVAG00000010601	lsm4	95	92.647	ENSPNAG00000016598	lsm4	100	92.647	Pygocentrus_nattereri
ENSCVAG00000010601	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	76.087	Rattus_norvegicus
ENSCVAG00000010601	lsm4	62	97.727	ENSRBIG00000024717	LSM4	99	77.536	Rhinopithecus_bieti
ENSCVAG00000010601	lsm4	62	97.727	ENSRROG00000045706	LSM4	99	77.536	Rhinopithecus_roxellana
ENSCVAG00000010601	lsm4	58	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSCVAG00000010601	lsm4	52	97.297	ENSSBOG00000022455	LSM4	98	75.000	Saimiri_boliviensis_boliviensis
ENSCVAG00000010601	lsm4	62	98.864	ENSSHAG00000011559	LSM4	99	78.571	Sarcophilus_harrisii
ENSCVAG00000010601	lsm4	100	90.972	ENSSFOG00015021067	lsm4	100	90.972	Scleropages_formosus
ENSCVAG00000010601	lsm4	100	76.000	ENSSMAG00000021020	lsm4	100	86.000	Scophthalmus_maximus
ENSCVAG00000010601	lsm4	100	81.437	ENSSDUG00000009588	lsm4	100	81.437	Seriola_dumerili
ENSCVAG00000010601	lsm4	100	80.952	ENSSLDG00000006827	lsm4	100	80.952	Seriola_lalandi_dorsalis
ENSCVAG00000010601	lsm4	61	98.851	ENSSPUG00000010166	LSM4	63	96.939	Sphenodon_punctatus
ENSCVAG00000010601	lsm4	100	89.404	ENSSPAG00000011615	lsm4	100	89.404	Stegastes_partitus
ENSCVAG00000010601	lsm4	62	97.727	ENSSSCG00000034314	LSM4	99	77.536	Sus_scrofa
ENSCVAG00000010601	lsm4	100	93.007	ENSTRUG00000021737	lsm4	100	93.007	Takifugu_rubripes
ENSCVAG00000010601	lsm4	100	88.194	ENSTNIG00000010191	lsm4	100	88.194	Tetraodon_nigroviridis
ENSCVAG00000010601	lsm4	62	97.727	ENSUAMG00000000665	LSM4	82	95.960	Ursus_americanus
ENSCVAG00000010601	lsm4	62	97.727	ENSUMAG00000009013	LSM4	99	77.536	Ursus_maritimus
ENSCVAG00000010601	lsm4	61	97.701	ENSVVUG00000008136	LSM4	70	77.372	Vulpes_vulpes
ENSCVAG00000010601	lsm4	69	97.959	ENSXETG00000024933	lsm4	99	88.489	Xenopus_tropicalis
ENSCVAG00000010601	lsm4	100	96.503	ENSXMAG00000026672	lsm4	76	96.503	Xiphophorus_maculatus