EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000011672 (Gene tree)
Gene ID: 107084799
Gene Symbol: setd1a
Alias: -
Full Name: SET domain containing 1A
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 28601 bases
Position: chrKL652609.1:1316270-1344870
Accession: 107084799
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000009670	RRM_1	PF00076.22	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000016150	-	9351	XM_015374819	ENSCVAP00000009670	2177 (aa)	XP_015230305	UPI0007428CCE

Gene Model

Click here to download ENSCVAG00000011672's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000011672's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000011672	setd1a	55	64.725	ENSCVAG00000022068	setd1ba	54	64.725

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000011672	setd1a	82	96.517	ENSAPOG00000018002	setd1a	79	94.313	Acanthochromis_polyacanthus
ENSCVAG00000011672	setd1a	76	89.855	ENSACIG00000007144	setd1a	96	97.368	Amphilophus_citrinellus
ENSCVAG00000011672	setd1a	100	81.458	ENSAOCG00000003663	setd1a	100	82.043	Amphiprion_ocellaris
ENSCVAG00000011672	setd1a	100	78.333	ENSATEG00000022798	setd1a	100	78.661	Anabas_testudineus
ENSCVAG00000011672	setd1a	50	78.502	ENSANAG00000021698	-	56	78.502	Aotus_nancymaae
ENSCVAG00000011672	setd1a	100	81.604	ENSACLG00000024747	setd1a	100	81.695	Astatotilapia_calliptera
ENSCVAG00000011672	setd1a	59	59.824	ENSAMXG00000009497	setd1a	100	59.647	Astyanax_mexicanus
ENSCVAG00000011672	setd1a	50	80.068	ENSCANG00000038478	-	68	80.068	Colobus_angolensis_palliatus
ENSCVAG00000011672	setd1a	100	75.980	ENSCSEG00000021605	setd1a	100	75.225	Cynoglossus_semilaevis
ENSCVAG00000011672	setd1a	100	59.619	ENSDARG00000060030	setd1a	100	59.283	Danio_rerio
ENSCVAG00000011672	setd1a	89	83.799	ENSFHEG00000023258	setd1a	97	93.103	Fundulus_heteroclitus
ENSCVAG00000011672	setd1a	63	92.971	ENSGAFG00000011698	setd1a	86	92.675	Gambusia_affinis
ENSCVAG00000011672	setd1a	79	84.699	ENSGACG00000013688	setd1a	89	85.246	Gasterosteus_aculeatus
ENSCVAG00000011672	setd1a	50	81.699	ENSGAGG00000010781	-	73	81.699	Gopherus_agassizii
ENSCVAG00000011672	setd1a	100	81.530	ENSHBUG00000008893	setd1a	100	81.621	Haplochromis_burtoni
ENSCVAG00000011672	setd1a	72	85.143	ENSHCOG00000003119	setd1a	93	92.500	Hippocampus_comes
ENSCVAG00000011672	setd1a	100	58.243	ENSIPUG00000007413	setd1a	100	58.721	Ictalurus_punctatus
ENSCVAG00000011672	setd1a	100	82.443	ENSKMAG00000009484	setd1a	100	82.624	Kryptolebias_marmoratus
ENSCVAG00000011672	setd1a	69	75.522	ENSLBEG00000004399	setd1a	69	75.212	Labrus_bergylta
ENSCVAG00000011672	setd1a	72	88.764	ENSMAMG00000021851	setd1a	97	91.051	Mastacembelus_armatus
ENSCVAG00000011672	setd1a	100	81.905	ENSMZEG00005023141	setd1a	100	82.177	Maylandia_zebra
ENSCVAG00000011672	setd1a	51	81.757	ENSMAUG00000008959	-	59	78.378	Mesocricetus_auratus
ENSCVAG00000011672	setd1a	71	90.831	ENSMMOG00000016992	setd1a	98	91.884	Mola_mola
ENSCVAG00000011672	setd1a	99	71.383	ENSMALG00000007401	setd1a	98	72.740	Monopterus_albus
ENSCVAG00000011672	setd1a	51	81.419	MGP_CAROLIEiJ_G0030519	-	100	72.589	Mus_caroli
ENSCVAG00000011672	setd1a	51	81.419	ENSMUSG00000042308	Setd1a	100	72.589	Mus_musculus
ENSCVAG00000011672	setd1a	51	81.419	MGP_PahariEiJ_G0013726	-	100	72.589	Mus_pahari
ENSCVAG00000011672	setd1a	74	76.301	ENSNBRG00000004760	setd1a	100	77.059	Neolamprologus_brichardi
ENSCVAG00000011672	setd1a	100	77.335	ENSORLG00000002213	setd1a	100	77.833	Oryzias_latipes
ENSCVAG00000011672	setd1a	100	77.596	ENSORLG00020011897	setd1a	100	77.823	Oryzias_latipes_hni
ENSCVAG00000011672	setd1a	100	77.985	ENSORLG00015004826	setd1a	100	77.975	Oryzias_latipes_hsok
ENSCVAG00000011672	setd1a	100	76.147	ENSOMEG00000019732	setd1a	100	77.475	Oryzias_melastigma
ENSCVAG00000011672	setd1a	53	67.559	ENSOGAG00000028006	-	55	72.973	Otolemur_garnettii
ENSCVAG00000011672	setd1a	100	82.409	ENSPFOG00000013669	setd1a	100	83.765	Poecilia_formosa
ENSCVAG00000011672	setd1a	100	85.007	ENSPREG00000010201	setd1a	100	85.461	Poecilia_reticulata
ENSCVAG00000011672	setd1a	100	80.942	ENSPNYG00000014139	setd1a	100	81.258	Pundamilia_nyererei
ENSCVAG00000011672	setd1a	100	59.923	ENSPNAG00000019165	setd1a	100	60.249	Pygocentrus_nattereri
ENSCVAG00000011672	setd1a	100	77.160	ENSSMAG00000008846	setd1a	100	77.748	Scophthalmus_maximus
ENSCVAG00000011672	setd1a	100	79.279	ENSSDUG00000022142	setd1a	100	80.728	Seriola_dumerili
ENSCVAG00000011672	setd1a	100	79.234	ENSSLDG00000018250	setd1a	100	80.683	Seriola_lalandi_dorsalis
ENSCVAG00000011672	setd1a	100	81.010	ENSSPAG00000007822	setd1a	100	82.183	Stegastes_partitus
ENSCVAG00000011672	setd1a	78	82.340	ENSTRUG00000008953	setd1a	92	82.128	Takifugu_rubripes
ENSCVAG00000011672	setd1a	82	87.766	ENSTNIG00000014930	setd1a	83	77.208	Tetraodon_nigroviridis
ENSCVAG00000011672	setd1a	58	84.858	ENSXCOG00000017585	setd1a	59	85.568	Xiphophorus_couchianus