EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000011703 (Gene tree)
Gene ID: 107086131
Gene Symbol: lsm11
Alias: im:7149708
Full Name: LSM11%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 5505 bases
Position: chrKL652508.1:2679507-2685011
Accession: 107086131
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000009706	LSM	PF01423.22	9.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000016166	-	531	-	ENSCVAP00000009688	176 (aa)	-	-
ENSCVAT00000016194	-	1326	XM_015376898	ENSCVAP00000009706	297 (aa)	XP_015232384	UPI00074286BB

Gene Model

Click here to download ENSCVAG00000011703's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000011703's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000011703	lsm11	100	63.578	ENSCSEG00000019951	lsm11	100	61.981	Cynoglossus_semilaevis
ENSCVAG00000011703	lsm11	100	60.883	ENSMMOG00000009365	lsm11	100	60.883	Mola_mola
ENSCVAG00000011703	lsm11	52	45.902	ENSMLUG00000015930	LSM11	98	45.902	Myotis_lucifugus
ENSCVAG00000011703	lsm11	100	59.048	ENSPMGG00000020709	lsm11	100	58.599	Periophthalmus_magnuspinnatus
ENSCVAG00000011703	lsm11	100	71.148	ENSPFOG00000000512	lsm11	98	69.935	Poecilia_formosa
ENSCVAG00000011703	lsm11	100	70.820	ENSPLAG00000019434	lsm11	100	69.079	Poecilia_latipinna
ENSCVAG00000011703	lsm11	100	72.607	ENSPREG00000019696	lsm11	89	71.382	Poecilia_reticulata
ENSCVAG00000011703	lsm11	100	71.148	ENSXMAG00000008238	lsm11	100	69.408	Xiphophorus_maculatus