EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000011842 (Gene tree)
Gene ID: 107104340
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 17842 bases
Position: chrKL654199.1:40222-58063
Accession: 107104340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000026327	EST1	PF10374.9	2.7e-23	1	1
ENSCVAP00000009811	EST1	PF10374.9	2.8e-23	1	1
ENSCVAP00000026351	EST1	PF10374.9	3e-23	1	1
ENSCVAP00000026327	EST1_DNA_bind	PF10373.9	1.1e-46	1	1
ENSCVAP00000009811	EST1_DNA_bind	PF10373.9	1.1e-46	1	1
ENSCVAP00000026351	EST1_DNA_bind	PF10373.9	1.3e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000029310	-	5418	XM_015404328	ENSCVAP00000009811	1127 (aa)	XP_015259814	-
ENSCVAT00000016341	-	5565	XM_015404326	ENSCVAP00000026351	1176 (aa)	XP_015259812	-
ENSCVAT00000016308	-	5331	XM_015404329	ENSCVAP00000026327	1098 (aa)	XP_015259815	-

Gene Model

Click here to download ENSCVAG00000011842's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000011842's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000011842	smg7	99	69.500	ENSG00000116698	SMG7	79	89.189	Homo_sapiens
ENSCVAG00000011842	smg7	89	86.996	ENSAPOG00000009611	smg7	95	86.996	Acanthochromis_polyacanthus
ENSCVAG00000011842	smg7	98	67.500	ENSAMEG00000002357	SMG7	97	68.000	Ailuropoda_melanoleuca
ENSCVAG00000011842	smg7	98	79.103	ENSACIG00000015152	smg7	100	79.211	Amphilophus_citrinellus
ENSCVAG00000011842	smg7	100	88.177	ENSAOCG00000013538	smg7	99	85.046	Amphiprion_ocellaris
ENSCVAG00000011842	smg7	100	88.177	ENSAPEG00000007851	smg7	99	84.808	Amphiprion_percula
ENSCVAG00000011842	smg7	100	83.595	ENSATEG00000006931	smg7	99	83.682	Anabas_testudineus
ENSCVAG00000011842	smg7	100	63.955	ENSAPLG00000015811	SMG7	97	65.198	Anas_platyrhynchos
ENSCVAG00000011842	smg7	98	71.282	ENSACAG00000014989	SMG7	98	63.539	Anolis_carolinensis
ENSCVAG00000011842	smg7	98	68.500	ENSANAG00000028114	SMG7	80	88.000	Aotus_nancymaae
ENSCVAG00000011842	smg7	100	83.251	ENSACLG00000022079	smg7	99	81.460	Astatotilapia_calliptera
ENSCVAG00000011842	smg7	100	79.695	ENSAMXG00000020809	smg7	99	73.764	Astyanax_mexicanus
ENSCVAG00000011842	smg7	100	69.500	ENSBTAG00000008003	SMG7	93	69.500	Bos_taurus
ENSCVAG00000011842	smg7	98	69.500	ENSCJAG00000005135	SMG7	81	88.000	Callithrix_jacchus
ENSCVAG00000011842	smg7	100	68.500	ENSCAFG00000013276	SMG7	90	68.500	Canis_familiaris
ENSCVAG00000011842	smg7	100	68.500	ENSCAFG00020015475	SMG7	79	89.189	Canis_lupus_dingo
ENSCVAG00000011842	smg7	100	70.500	ENSCHIG00000018192	SMG7	95	71.000	Capra_hircus
ENSCVAG00000011842	smg7	99	69.500	ENSTSYG00000002667	SMG7	97	69.500	Carlito_syrichta
ENSCVAG00000011842	smg7	100	62.635	ENSCPOG00000008906	SMG7	93	68.500	Cavia_porcellus
ENSCVAG00000011842	smg7	96	69.500	ENSCCAG00000028596	SMG7	80	88.000	Cebus_capucinus
ENSCVAG00000011842	smg7	99	69.000	ENSCATG00000011063	SMG7	80	88.000	Cercocebus_atys
ENSCVAG00000011842	smg7	100	64.144	ENSCLAG00000010751	SMG7	95	68.000	Chinchilla_lanigera
ENSCVAG00000011842	smg7	99	69.500	ENSCSAG00000012654	SMG7	93	69.500	Chlorocebus_sabaeus
ENSCVAG00000011842	smg7	93	63.636	ENSCHOG00000010522	SMG7	86	64.242	Choloepus_hoffmanni
ENSCVAG00000011842	smg7	100	70.000	ENSCPBG00000015724	SMG7	95	70.000	Chrysemys_picta_bellii
ENSCVAG00000011842	smg7	98	69.000	ENSCANG00000015680	SMG7	80	88.000	Colobus_angolensis_palliatus
ENSCVAG00000011842	smg7	99	68.000	ENSCGRG00001013705	Smg7	95	68.500	Cricetulus_griseus_chok1gshd
ENSCVAG00000011842	smg7	99	68.000	ENSCGRG00000018401	Smg7	99	63.887	Cricetulus_griseus_crigri
ENSCVAG00000011842	smg7	100	82.234	ENSDARG00000060767	smg7	93	82.234	Danio_rerio
ENSCVAG00000011842	smg7	100	62.717	ENSDORG00000007331	Smg7	92	69.500	Dipodomys_ordii
ENSCVAG00000011842	smg7	97	61.954	ENSETEG00000002654	SMG7	98	61.954	Echinops_telfairi
ENSCVAG00000011842	smg7	100	69.500	ENSEASG00005006524	SMG7	98	63.629	Equus_asinus_asinus
ENSCVAG00000011842	smg7	95	81.948	ENSECAG00000004313	SMG7	96	81.948	Equus_caballus
ENSCVAG00000011842	smg7	96	64.417	ENSEEUG00000002024	SMG7	92	62.093	Erinaceus_europaeus
ENSCVAG00000011842	smg7	100	79.808	ENSELUG00000010293	smg7	99	74.463	Esox_lucius
ENSCVAG00000011842	smg7	100	63.531	ENSFCAG00000010900	SMG7	98	67.308	Felis_catus
ENSCVAG00000011842	smg7	97	67.000	ENSFALG00000003047	SMG7	100	62.500	Ficedula_albicollis
ENSCVAG00000011842	smg7	100	68.500	ENSFDAG00000012121	SMG7	93	69.000	Fukomys_damarensis
ENSCVAG00000011842	smg7	100	89.771	ENSFHEG00000011073	smg7	99	89.683	Fundulus_heteroclitus
ENSCVAG00000011842	smg7	84	79.423	ENSGMOG00000004916	smg7	90	79.231	Gadus_morhua
ENSCVAG00000011842	smg7	100	63.613	ENSGALG00000004667	SMG7	98	63.356	Gallus_gallus
ENSCVAG00000011842	smg7	100	86.219	ENSGAFG00000019000	smg7	99	86.131	Gambusia_affinis
ENSCVAG00000011842	smg7	97	82.857	ENSGACG00000001634	smg7	98	78.488	Gasterosteus_aculeatus
ENSCVAG00000011842	smg7	99	69.000	ENSGGOG00000002342	SMG7	97	69.500	Gorilla_gorilla
ENSCVAG00000011842	smg7	100	83.744	ENSHBUG00000003726	smg7	99	81.460	Haplochromis_burtoni
ENSCVAG00000011842	smg7	99	68.500	ENSHGLG00000009353	SMG7	100	63.380	Heterocephalus_glaber_female
ENSCVAG00000011842	smg7	98	59.106	ENSHGLG00100004878	-	98	57.583	Heterocephalus_glaber_male
ENSCVAG00000011842	smg7	99	68.500	ENSHGLG00100009637	-	94	69.000	Heterocephalus_glaber_male
ENSCVAG00000011842	smg7	100	80.402	ENSIPUG00000016997	smg7	93	80.402	Ictalurus_punctatus
ENSCVAG00000011842	smg7	99	69.000	ENSSTOG00000000401	SMG7	95	69.000	Ictidomys_tridecemlineatus
ENSCVAG00000011842	smg7	98	69.000	ENSJJAG00000012351	Smg7	95	69.000	Jaculus_jaculus
ENSCVAG00000011842	smg7	93	89.109	ENSKMAG00000004900	smg7	100	80.889	Kryptolebias_marmoratus
ENSCVAG00000011842	smg7	55	72.578	ENSLBEG00000005220	-	75	73.071	Labrus_bergylta
ENSCVAG00000011842	smg7	100	81.602	ENSLBEG00000002983	smg7	98	82.042	Labrus_bergylta
ENSCVAG00000011842	smg7	100	65.461	ENSLACG00000000972	SMG7	95	72.500	Latimeria_chalumnae
ENSCVAG00000011842	smg7	100	68.369	ENSLOCG00000002010	smg7	98	68.204	Lepisosteus_oculatus
ENSCVAG00000011842	smg7	99	68.500	ENSLAFG00000008186	SMG7	95	69.000	Loxodonta_africana
ENSCVAG00000011842	smg7	99	69.000	ENSMFAG00000031653	SMG7	80	88.000	Macaca_fascicularis
ENSCVAG00000011842	smg7	99	69.000	ENSMMUG00000018458	SMG7	95	69.000	Macaca_mulatta
ENSCVAG00000011842	smg7	98	69.000	ENSMNEG00000034798	SMG7	80	88.000	Macaca_nemestrina
ENSCVAG00000011842	smg7	99	69.000	ENSMLEG00000037170	SMG7	97	69.000	Mandrillus_leucophaeus
ENSCVAG00000011842	smg7	88	80.835	ENSMAMG00000018733	smg7	84	81.120	Mastacembelus_armatus
ENSCVAG00000011842	smg7	100	83.251	ENSMZEG00005015247	smg7	99	81.376	Maylandia_zebra
ENSCVAG00000011842	smg7	99	63.293	ENSMGAG00000001561	SMG7	99	63.036	Meleagris_gallopavo
ENSCVAG00000011842	smg7	100	69.000	ENSMAUG00000019484	Smg7	95	69.500	Mesocricetus_auratus
ENSCVAG00000011842	smg7	100	69.000	ENSMICG00000007145	SMG7	76	89.189	Microcebus_murinus
ENSCVAG00000011842	smg7	99	68.000	ENSMOCG00000020748	Smg7	95	68.500	Microtus_ochrogaster
ENSCVAG00000011842	smg7	94	86.432	ENSMMOG00000001524	smg7	98	80.035	Mola_mola
ENSCVAG00000011842	smg7	92	64.339	ENSMODG00000007139	SMG7	98	64.492	Monodelphis_domestica
ENSCVAG00000011842	smg7	100	85.714	ENSMALG00000000061	smg7	92	85.714	Monopterus_albus
ENSCVAG00000011842	smg7	99	68.500	MGP_CAROLIEiJ_G0014704	Smg7	95	69.000	Mus_caroli
ENSCVAG00000011842	smg7	99	68.500	ENSMUSG00000042772	Smg7	95	69.000	Mus_musculus
ENSCVAG00000011842	smg7	99	68.500	MGP_PahariEiJ_G0027940	Smg7	95	69.000	Mus_pahari
ENSCVAG00000011842	smg7	99	68.500	MGP_SPRETEiJ_G0015511	Smg7	95	69.000	Mus_spretus
ENSCVAG00000011842	smg7	99	67.500	ENSMPUG00000011732	SMG7	97	62.261	Mustela_putorius_furo
ENSCVAG00000011842	smg7	100	68.000	ENSMLUG00000015417	SMG7	98	63.132	Myotis_lucifugus
ENSCVAG00000011842	smg7	99	67.000	ENSNGAG00000009836	Smg7	95	67.500	Nannospalax_galili
ENSCVAG00000011842	smg7	99	75.919	ENSNBRG00000024343	smg7	99	75.571	Neolamprologus_brichardi
ENSCVAG00000011842	smg7	99	69.500	ENSNLEG00000018018	SMG7	97	70.000	Nomascus_leucogenys
ENSCVAG00000011842	smg7	66	100.000	ENSMEUG00000004681	SMG7	67	100.000	Notamacropus_eugenii
ENSCVAG00000011842	smg7	96	61.350	ENSOPRG00000013942	SMG7	95	57.686	Ochotona_princeps
ENSCVAG00000011842	smg7	100	64.089	ENSODEG00000010390	SMG7	95	68.000	Octodon_degus
ENSCVAG00000011842	smg7	100	81.659	ENSONIG00000000277	smg7	99	81.261	Oreochromis_niloticus
ENSCVAG00000011842	smg7	99	68.500	ENSOANG00000000994	SMG7	100	62.075	Ornithorhynchus_anatinus
ENSCVAG00000011842	smg7	99	67.692	ENSOCUG00000005887	SMG7	85	68.718	Oryctolagus_cuniculus
ENSCVAG00000011842	smg7	100	78.276	ENSORLG00000007314	smg7	99	78.614	Oryzias_latipes
ENSCVAG00000011842	smg7	100	78.445	ENSORLG00020015779	smg7	99	78.867	Oryzias_latipes_hni
ENSCVAG00000011842	smg7	100	78.783	ENSORLG00015012289	smg7	99	78.698	Oryzias_latipes_hsok
ENSCVAG00000011842	smg7	100	78.952	ENSOMEG00000002328	smg7	99	79.205	Oryzias_melastigma
ENSCVAG00000011842	smg7	97	64.417	ENSOGAG00000003107	SMG7	92	61.795	Otolemur_garnettii
ENSCVAG00000011842	smg7	100	70.000	ENSOARG00000001352	SMG7	93	70.500	Ovis_aries
ENSCVAG00000011842	smg7	98	69.500	ENSPPAG00000031619	SMG7	80	88.000	Pan_paniscus
ENSCVAG00000011842	smg7	100	63.832	ENSPPRG00000011222	SMG7	98	63.715	Panthera_pardus
ENSCVAG00000011842	smg7	98	63.193	ENSPTIG00000007242	SMG7	100	63.078	Panthera_tigris_altaica
ENSCVAG00000011842	smg7	98	69.500	ENSPTRG00000001764	SMG7	80	88.000	Pan_troglodytes
ENSCVAG00000011842	smg7	99	69.000	ENSPANG00000004520	SMG7	98	64.599	Papio_anubis
ENSCVAG00000011842	smg7	100	68.165	ENSPKIG00000007242	smg7	99	67.842	Paramormyrops_kingsleyae
ENSCVAG00000011842	smg7	100	70.000	ENSPSIG00000012201	SMG7	100	65.199	Pelodiscus_sinensis
ENSCVAG00000011842	smg7	72	50.061	ENSPMGG00000021833	smg7	97	50.183	Periophthalmus_magnuspinnatus
ENSCVAG00000011842	smg7	100	68.500	ENSPEMG00000011315	Smg7	95	69.000	Peromyscus_maniculatus_bairdii
ENSCVAG00000011842	smg7	99	69.500	ENSPCIG00000003786	SMG7	82	88.591	Phascolarctos_cinereus
ENSCVAG00000011842	smg7	100	88.748	ENSPFOG00000019219	smg7	99	88.663	Poecilia_formosa
ENSCVAG00000011842	smg7	100	88.693	ENSPLAG00000001446	smg7	99	88.604	Poecilia_latipinna
ENSCVAG00000011842	smg7	97	88.311	ENSPMEG00000005218	smg7	98	88.219	Poecilia_mexicana
ENSCVAG00000011842	smg7	88	82.689	ENSPREG00000019039	smg7	92	80.889	Poecilia_reticulata
ENSCVAG00000011842	smg7	100	64.513	ENSPPYG00000000427	SMG7	98	64.686	Pongo_abelii
ENSCVAG00000011842	smg7	96	61.963	ENSPCAG00000008360	SMG7	86	69.913	Procavia_capensis
ENSCVAG00000011842	smg7	100	70.000	ENSPCOG00000011996	SMG7	95	70.500	Propithecus_coquereli
ENSCVAG00000011842	smg7	91	70.874	ENSPVAG00000000851	SMG7	82	69.903	Pteropus_vampyrus
ENSCVAG00000011842	smg7	100	83.582	ENSPNYG00000007643	smg7	99	81.497	Pundamilia_nyererei
ENSCVAG00000011842	smg7	100	81.726	ENSPNAG00000011374	smg7	92	81.726	Pygocentrus_nattereri
ENSCVAG00000011842	smg7	99	69.652	ENSRNOG00000027962	Smg7	97	69.652	Rattus_norvegicus
ENSCVAG00000011842	smg7	99	69.000	ENSRBIG00000036316	SMG7	97	69.000	Rhinopithecus_bieti
ENSCVAG00000011842	smg7	99	69.000	ENSRROG00000035719	SMG7	97	69.000	Rhinopithecus_roxellana
ENSCVAG00000011842	smg7	98	68.000	ENSSBOG00000023454	SMG7	80	88.000	Saimiri_boliviensis_boliviensis
ENSCVAG00000011842	smg7	100	64.746	ENSSHAG00000013147	SMG7	98	64.832	Sarcophilus_harrisii
ENSCVAG00000011842	smg7	100	70.927	ENSSFOG00015017252	smg7	99	71.094	Scleropages_formosus
ENSCVAG00000011842	smg7	100	86.700	ENSSMAG00000006067	smg7	93	86.700	Scophthalmus_maximus
ENSCVAG00000011842	smg7	65	86.806	ENSSDUG00000017543	smg7	99	83.767	Seriola_dumerili
ENSCVAG00000011842	smg7	100	63.388	ENSSPUG00000002064	SMG7	98	64.045	Sphenodon_punctatus
ENSCVAG00000011842	smg7	99	82.353	ENSSPAG00000008733	smg7	98	81.371	Stegastes_partitus
ENSCVAG00000011842	smg7	100	69.500	ENSSSCG00000015558	SMG7	92	70.000	Sus_scrofa
ENSCVAG00000011842	smg7	100	63.925	ENSTGUG00000003928	SMG7	99	63.668	Taeniopygia_guttata
ENSCVAG00000011842	smg7	100	79.293	ENSTNIG00000002802	smg7	92	79.293	Tetraodon_nigroviridis
ENSCVAG00000011842	smg7	79	63.314	ENSTBEG00000003220	SMG7	74	63.314	Tupaia_belangeri
ENSCVAG00000011842	smg7	97	63.804	ENSTTRG00000014778	SMG7	93	62.243	Tursiops_truncatus
ENSCVAG00000011842	smg7	98	61.606	ENSUAMG00000017473	SMG7	100	61.695	Ursus_americanus
ENSCVAG00000011842	smg7	98	68.000	ENSUMAG00000016389	SMG7	97	68.500	Ursus_maritimus
ENSCVAG00000011842	smg7	100	68.500	ENSVVUG00000008976	SMG7	98	66.827	Vulpes_vulpes
ENSCVAG00000011842	smg7	100	59.607	ENSXETG00000012528	smg7	99	59.744	Xenopus_tropicalis
ENSCVAG00000011842	smg7	100	87.356	ENSXMAG00000007123	smg7	99	85.942	Xiphophorus_maculatus