EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000012213 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 7009 bases
Position: chrKL652621.1:801993-809001
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000010139	zf-C2H2	PF00096.26	7.4e-38	1	7
ENSCVAP00000010139	zf-C2H2	PF00096.26	7.4e-38	2	7
ENSCVAP00000010139	zf-C2H2	PF00096.26	7.4e-38	3	7
ENSCVAP00000010139	zf-C2H2	PF00096.26	7.4e-38	4	7
ENSCVAP00000010139	zf-C2H2	PF00096.26	7.4e-38	5	7
ENSCVAP00000010139	zf-C2H2	PF00096.26	7.4e-38	6	7
ENSCVAP00000010139	zf-C2H2	PF00096.26	7.4e-38	7	7
ENSCVAP00000010139	zf-met	PF12874.7	4.6e-07	1	2
ENSCVAP00000010139	zf-met	PF12874.7	4.6e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000016737	-	5000	-	ENSCVAP00000010139	715 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000012213's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000012213's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000012213	-	50	45.775	ENSCVAG00000006484	-	84	45.775
ENSCVAG00000012213	-	54	34.562	ENSCVAG00000015597	si:ch211-166g5.4	66	34.562

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000012213	-	51	49.321	ENSAPOG00000005986	-	84	49.321	Acanthochromis_polyacanthus
ENSCVAG00000012213	-	59	41.000	ENSAPOG00000020864	-	84	42.412	Acanthochromis_polyacanthus
ENSCVAG00000012213	-	67	49.565	ENSAPOG00000013125	-	98	49.780	Acanthochromis_polyacanthus
ENSCVAG00000012213	-	72	55.963	ENSAOCG00000014651	-	60	55.963	Amphiprion_ocellaris
ENSCVAG00000012213	-	67	49.565	ENSAPEG00000020501	-	98	49.780	Amphiprion_percula
ENSCVAG00000012213	-	55	53.097	ENSAPEG00000009381	-	95	53.097	Amphiprion_percula
ENSCVAG00000012213	-	57	50.431	ENSAPEG00000010438	-	100	50.431	Amphiprion_percula
ENSCVAG00000012213	-	57	50.292	ENSATEG00000008649	-	100	46.809	Anabas_testudineus
ENSCVAG00000012213	-	66	51.397	ENSATEG00000014239	-	98	51.397	Anabas_testudineus
ENSCVAG00000012213	-	50	48.252	ENSACLG00000017801	-	93	48.252	Astatotilapia_calliptera
ENSCVAG00000012213	-	52	50.435	ENSACLG00000021184	-	89	50.435	Astatotilapia_calliptera
ENSCVAG00000012213	-	55	49.425	ENSACLG00000017321	-	97	50.588	Astatotilapia_calliptera
ENSCVAG00000012213	-	50	50.000	ENSCSEG00000019182	-	67	49.746	Cynoglossus_semilaevis
ENSCVAG00000012213	-	51	48.018	ENSEBUG00000005319	-	59	49.550	Eptatretus_burgeri
ENSCVAG00000012213	-	52	47.529	ENSFHEG00000011388	-	63	47.529	Fundulus_heteroclitus
ENSCVAG00000012213	-	78	73.793	ENSKMAG00000006231	-	96	84.513	Kryptolebias_marmoratus
ENSCVAG00000012213	-	50	48.810	ENSKMAG00000010499	-	84	48.810	Kryptolebias_marmoratus
ENSCVAG00000012213	-	53	47.594	ENSKMAG00000000387	-	83	47.594	Kryptolebias_marmoratus
ENSCVAG00000012213	-	67	50.442	ENSMAMG00000017946	-	95	50.220	Mastacembelus_armatus
ENSCVAG00000012213	-	57	50.952	ENSMAMG00000014678	-	63	50.952	Mastacembelus_armatus
ENSCVAG00000012213	-	50	73.874	ENSMAMG00000007392	-	60	73.874	Mastacembelus_armatus
ENSCVAG00000012213	-	53	55.172	ENSMAMG00000018071	-	92	55.172	Mastacembelus_armatus
ENSCVAG00000012213	-	59	50.000	ENSMALG00000005562	-	95	50.000	Monopterus_albus
ENSCVAG00000012213	-	71	81.148	ENSMALG00000003975	-	99	69.796	Monopterus_albus
ENSCVAG00000012213	-	53	51.327	ENSNBRG00000004822	-	77	51.327	Neolamprologus_brichardi
ENSCVAG00000012213	-	52	60.241	ENSONIG00000009379	-	83	60.241	Oreochromis_niloticus
ENSCVAG00000012213	-	54	43.229	ENSPFOG00000008638	-	90	44.578	Poecilia_formosa
ENSCVAG00000012213	-	61	50.785	ENSPFOG00000005528	-	97	50.785	Poecilia_formosa
ENSCVAG00000012213	-	60	52.174	ENSPLAG00000007464	-	92	52.174	Poecilia_latipinna
ENSCVAG00000012213	-	59	52.356	ENSPREG00000003650	-	98	52.356	Poecilia_reticulata
ENSCVAG00000012213	-	52	46.853	ENSPNYG00000002862	-	91	46.853	Pundamilia_nyererei
ENSCVAG00000012213	-	92	73.188	ENSSDUG00000000786	-	93	61.446	Seriola_dumerili
ENSCVAG00000012213	-	63	51.977	ENSSDUG00000009577	-	100	51.977	Seriola_dumerili
ENSCVAG00000012213	-	63	50.649	ENSSLDG00000020655	-	99	50.649	Seriola_lalandi_dorsalis
ENSCVAG00000012213	-	99	41.656	ENSSPAG00000020960	-	85	74.060	Stegastes_partitus
ENSCVAG00000012213	-	58	49.339	ENSTRUG00000019483	-	94	48.619	Takifugu_rubripes