EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000012305 (Gene tree)
Gene ID: 107095468
Gene Symbol: prpf38a
Alias: fa04h11|fc83e08|wu:fa04h11|wu:fc83e08|zgc:92059
Full Name: pre-mRNA processing factor 38A
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 8491 bases
Position: chrKL653050.1:376953-385443
Accession: 107095468
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000010203	PRP38	PF03371.15	2.8e-63	1	1
ENSCVAP00000010212	PRP38	PF03371.15	2.8e-63	1	1
ENSCVAP00000010220	PRP38	PF03371.15	2.8e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000029472	-	1426	-	ENSCVAP00000010212	309 (aa)	-	UPI000742AC1F
ENSCVAT00000016935	-	1426	-	ENSCVAP00000010220	309 (aa)	-	UPI000742AC1F
ENSCVAT00000029470	-	1267	XM_015391582	ENSCVAP00000010203	309 (aa)	XP_015247068	UPI000742AC1F

Gene Model

Click here to download ENSCVAG00000012305's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000012305's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000012305	prpf38a	100	82.428	ENSG00000134748	PRPF38A	71	90.498	Homo_sapiens
ENSCVAG00000012305	prpf38a	100	96.117	ENSAPOG00000011652	prpf38a	100	96.117	Acanthochromis_polyacanthus
ENSCVAG00000012305	prpf38a	100	82.428	ENSAMEG00000009319	PRPF38A	71	90.498	Ailuropoda_melanoleuca
ENSCVAG00000012305	prpf38a	72	92.857	ENSACIG00000012292	prpf38a	73	92.857	Amphilophus_citrinellus
ENSCVAG00000012305	prpf38a	100	96.117	ENSAOCG00000018004	prpf38a	100	96.117	Amphiprion_ocellaris
ENSCVAG00000012305	prpf38a	100	96.117	ENSAPEG00000021414	prpf38a	100	96.117	Amphiprion_percula
ENSCVAG00000012305	prpf38a	72	94.570	ENSATEG00000004608	prpf38a	72	94.570	Anabas_testudineus
ENSCVAG00000012305	prpf38a	79	78.226	ENSAPLG00000005827	PRPF38A	63	87.179	Anas_platyrhynchos
ENSCVAG00000012305	prpf38a	100	80.831	ENSACAG00000008249	PRPF38A	71	88.235	Anolis_carolinensis
ENSCVAG00000012305	prpf38a	100	82.428	ENSANAG00000027839	PRPF38A	71	90.498	Aotus_nancymaae
ENSCVAG00000012305	prpf38a	100	60.635	ENSANAG00000029204	-	70	57.778	Aotus_nancymaae
ENSCVAG00000012305	prpf38a	72	94.118	ENSACLG00000021595	prpf38a	74	94.118	Astatotilapia_calliptera
ENSCVAG00000012305	prpf38a	100	84.665	ENSAMXG00000029274	prpf38a	71	94.570	Astyanax_mexicanus
ENSCVAG00000012305	prpf38a	100	82.428	ENSBTAG00000002720	PRPF38A	75	90.498	Bos_taurus
ENSCVAG00000012305	prpf38a	63	63.590	WBGene00008380	prp-38	70	60.538	Caenorhabditis_elegans
ENSCVAG00000012305	prpf38a	100	82.428	ENSCJAG00000021594	PRPF38A	74	90.498	Callithrix_jacchus
ENSCVAG00000012305	prpf38a	100	82.428	ENSCAFG00000003740	PRPF38A	71	90.498	Canis_familiaris
ENSCVAG00000012305	prpf38a	100	82.428	ENSCAFG00020010939	PRPF38A	71	90.498	Canis_lupus_dingo
ENSCVAG00000012305	prpf38a	100	82.428	ENSCHIG00000024730	PRPF38A	71	90.498	Capra_hircus
ENSCVAG00000012305	prpf38a	86	78.889	ENSTSYG00000031994	-	63	87.640	Carlito_syrichta
ENSCVAG00000012305	prpf38a	100	82.428	ENSTSYG00000009868	-	71	90.498	Carlito_syrichta
ENSCVAG00000012305	prpf38a	100	83.923	ENSCPOG00000005079	PRPF38A	71	90.498	Cavia_porcellus
ENSCVAG00000012305	prpf38a	75	89.610	ENSCCAG00000026502	PRPF38A	71	90.498	Cebus_capucinus
ENSCVAG00000012305	prpf38a	100	82.428	ENSCATG00000032296	PRPF38A	71	90.498	Cercocebus_atys
ENSCVAG00000012305	prpf38a	93	53.979	ENSCATG00000044190	-	57	56.915	Cercocebus_atys
ENSCVAG00000012305	prpf38a	100	82.428	ENSCLAG00000005816	PRPF38A	71	90.498	Chinchilla_lanigera
ENSCVAG00000012305	prpf38a	100	81.470	ENSCPBG00000014791	PRPF38A	71	89.140	Chrysemys_picta_bellii
ENSCVAG00000012305	prpf38a	75	69.697	ENSCSAVG00000009580	-	62	76.596	Ciona_savignyi
ENSCVAG00000012305	prpf38a	75	89.610	ENSCANG00000032608	PRPF38A	74	90.498	Colobus_angolensis_palliatus
ENSCVAG00000012305	prpf38a	84	72.797	ENSCGRG00001002557	-	74	76.471	Cricetulus_griseus_chok1gshd
ENSCVAG00000012305	prpf38a	100	82.428	ENSCGRG00001018502	-	71	90.498	Cricetulus_griseus_chok1gshd
ENSCVAG00000012305	prpf38a	100	82.428	ENSCGRG00000014868	Prpf38a	71	90.498	Cricetulus_griseus_crigri
ENSCVAG00000012305	prpf38a	72	93.665	ENSCSEG00000001269	prpf38a	76	93.665	Cynoglossus_semilaevis
ENSCVAG00000012305	prpf38a	100	84.026	ENSDARG00000039213	prpf38a	71	94.118	Danio_rerio
ENSCVAG00000012305	prpf38a	100	82.428	ENSDNOG00000042326	PRPF38A	72	90.498	Dasypus_novemcinctus
ENSCVAG00000012305	prpf38a	84	76.046	ENSDORG00000023691	-	75	83.028	Dipodomys_ordii
ENSCVAG00000012305	prpf38a	84	76.046	ENSDORG00000025371	-	75	83.028	Dipodomys_ordii
ENSCVAG00000012305	prpf38a	85	97.917	ENSDORG00000023857	-	64	97.917	Dipodomys_ordii
ENSCVAG00000012305	prpf38a	65	73.134	FBgn0050342	Prp38	57	75.532	Drosophila_melanogaster
ENSCVAG00000012305	prpf38a	77	81.172	ENSEBUG00000012588	prpf38a	71	81.166	Eptatretus_burgeri
ENSCVAG00000012305	prpf38a	100	82.428	ENSEASG00005014427	PRPF38A	71	90.498	Equus_asinus_asinus
ENSCVAG00000012305	prpf38a	100	82.428	ENSECAG00000022628	PRPF38A	71	90.498	Equus_caballus
ENSCVAG00000012305	prpf38a	72	93.665	ENSELUG00000021094	prpf38a	75	93.665	Esox_lucius
ENSCVAG00000012305	prpf38a	100	82.428	ENSFCAG00000002518	PRPF38A	71	90.498	Felis_catus
ENSCVAG00000012305	prpf38a	99	76.452	ENSFALG00000003612	-	73	84.862	Ficedula_albicollis
ENSCVAG00000012305	prpf38a	87	79.412	ENSFALG00000005598	-	66	87.778	Ficedula_albicollis
ENSCVAG00000012305	prpf38a	100	83.601	ENSFDAG00000011287	PRPF38A	72	90.498	Fukomys_damarensis
ENSCVAG00000012305	prpf38a	95	98.644	ENSFHEG00000014317	prpf38a	100	98.644	Fundulus_heteroclitus
ENSCVAG00000012305	prpf38a	54	98.193	ENSGMOG00000011384	prpf38a	54	98.193	Gadus_morhua
ENSCVAG00000012305	prpf38a	100	82.109	ENSGALG00000010627	PRPF38A	71	90.045	Gallus_gallus
ENSCVAG00000012305	prpf38a	100	99.029	ENSGAFG00000012422	prpf38a	100	99.029	Gambusia_affinis
ENSCVAG00000012305	prpf38a	72	92.825	ENSGACG00000005423	prpf38a	100	94.212	Gasterosteus_aculeatus
ENSCVAG00000012305	prpf38a	54	92.353	ENSGACG00000000182	-	100	92.353	Gasterosteus_aculeatus
ENSCVAG00000012305	prpf38a	100	81.470	ENSGAGG00000020547	PRPF38A	71	89.140	Gopherus_agassizii
ENSCVAG00000012305	prpf38a	100	82.428	ENSGGOG00000003940	PRPF38A	71	90.498	Gorilla_gorilla
ENSCVAG00000012305	prpf38a	66	96.552	ENSHBUG00000020572	prpf38a	86	96.552	Haplochromis_burtoni
ENSCVAG00000012305	prpf38a	100	82.428	ENSHGLG00000000475	PRPF38A	71	90.498	Heterocephalus_glaber_female
ENSCVAG00000012305	prpf38a	100	74.598	ENSHGLG00000007918	-	71	78.281	Heterocephalus_glaber_female
ENSCVAG00000012305	prpf38a	100	82.428	ENSHGLG00100008935	PRPF38A	71	90.498	Heterocephalus_glaber_male
ENSCVAG00000012305	prpf38a	100	74.598	ENSHGLG00100003928	-	71	78.281	Heterocephalus_glaber_male
ENSCVAG00000012305	prpf38a	59	94.505	ENSHCOG00000020781	prpf38a	59	94.681	Hippocampus_comes
ENSCVAG00000012305	prpf38a	90	83.513	ENSIPUG00000005757	prpf38a	71	91.892	Ictalurus_punctatus
ENSCVAG00000012305	prpf38a	100	82.428	ENSSTOG00000015610	PRPF38A	71	90.498	Ictidomys_tridecemlineatus
ENSCVAG00000012305	prpf38a	100	81.789	ENSJJAG00000015811	Prpf38a	71	89.593	Jaculus_jaculus
ENSCVAG00000012305	prpf38a	100	98.058	ENSKMAG00000006588	prpf38a	100	98.058	Kryptolebias_marmoratus
ENSCVAG00000012305	prpf38a	100	94.175	ENSLBEG00000020585	prpf38a	72	94.118	Labrus_bergylta
ENSCVAG00000012305	prpf38a	100	81.789	ENSLACG00000011495	PRPF38A	71	88.688	Latimeria_chalumnae
ENSCVAG00000012305	prpf38a	100	91.613	ENSLOCG00000006262	prpf38a	72	90.090	Lepisosteus_oculatus
ENSCVAG00000012305	prpf38a	100	82.428	ENSLAFG00000025862	PRPF38A	71	90.498	Loxodonta_africana
ENSCVAG00000012305	prpf38a	100	82.428	ENSMFAG00000039449	PRPF38A	74	90.498	Macaca_fascicularis
ENSCVAG00000012305	prpf38a	87	79.779	ENSMMUG00000014333	PRPF38A	65	87.845	Macaca_mulatta
ENSCVAG00000012305	prpf38a	100	82.428	ENSMNEG00000031221	PRPF38A	71	90.498	Macaca_nemestrina
ENSCVAG00000012305	prpf38a	93	53.979	ENSMNEG00000040242	-	65	58.937	Macaca_nemestrina
ENSCVAG00000012305	prpf38a	100	82.428	ENSMLEG00000041105	PRPF38A	71	90.498	Mandrillus_leucophaeus
ENSCVAG00000012305	prpf38a	100	96.764	ENSMAMG00000015431	prpf38a	100	96.764	Mastacembelus_armatus
ENSCVAG00000012305	prpf38a	72	94.118	ENSMZEG00005017838	prpf38a	72	94.118	Maylandia_zebra
ENSCVAG00000012305	prpf38a	75	89.177	ENSMGAG00000011176	PRPF38A	74	90.045	Meleagris_gallopavo
ENSCVAG00000012305	prpf38a	85	84.470	ENSMAUG00000018029	-	84	85.973	Mesocricetus_auratus
ENSCVAG00000012305	prpf38a	100	82.428	ENSMICG00000014193	PRPF38A	71	90.498	Microcebus_murinus
ENSCVAG00000012305	prpf38a	100	82.428	ENSMOCG00000013080	Prpf38a	71	90.498	Microtus_ochrogaster
ENSCVAG00000012305	prpf38a	100	89.389	ENSMMOG00000016972	prpf38a	78	95.475	Mola_mola
ENSCVAG00000012305	prpf38a	100	80.255	ENSMODG00000000644	PRPF38A	71	87.387	Monodelphis_domestica
ENSCVAG00000012305	prpf38a	100	96.440	ENSMALG00000019363	prpf38a	97	96.440	Monopterus_albus
ENSCVAG00000012305	prpf38a	100	82.109	MGP_CAROLIEiJ_G0026269	Prpf38a	71	90.045	Mus_caroli
ENSCVAG00000012305	prpf38a	100	82.109	ENSMUSG00000063800	Prpf38a	71	90.045	Mus_musculus
ENSCVAG00000012305	prpf38a	100	82.109	MGP_PahariEiJ_G0028602	Prpf38a	71	90.045	Mus_pahari
ENSCVAG00000012305	prpf38a	100	81.789	MGP_SPRETEiJ_G0027238	Prpf38a	93	93.617	Mus_spretus
ENSCVAG00000012305	prpf38a	100	82.428	ENSMPUG00000006896	PRPF38A	71	90.498	Mustela_putorius_furo
ENSCVAG00000012305	prpf38a	100	84.244	ENSNGAG00000011884	Prpf38a	72	90.498	Nannospalax_galili
ENSCVAG00000012305	prpf38a	72	92.857	ENSNBRG00000004013	prpf38a	72	92.857	Neolamprologus_brichardi
ENSCVAG00000012305	prpf38a	93	57.045	ENSNLEG00000033398	-	60	52.511	Nomascus_leucogenys
ENSCVAG00000012305	prpf38a	93	81.379	ENSNLEG00000017999	PRPF38A	63	89.899	Nomascus_leucogenys
ENSCVAG00000012305	prpf38a	97	63.487	ENSNLEG00000012592	-	67	59.729	Nomascus_leucogenys
ENSCVAG00000012305	prpf38a	100	78.914	ENSMEUG00000003860	PRPF38A	71	85.520	Notamacropus_eugenii
ENSCVAG00000012305	prpf38a	74	89.912	ENSOPRG00000008985	PRPF38A	92	90.498	Ochotona_princeps
ENSCVAG00000012305	prpf38a	100	82.428	ENSODEG00000005869	PRPF38A	71	90.498	Octodon_degus
ENSCVAG00000012305	prpf38a	72	93.665	ENSONIG00000007816	prpf38a	72	93.665	Oreochromis_niloticus
ENSCVAG00000012305	prpf38a	75	45.494	ENSOANG00000009541	-	71	44.395	Ornithorhynchus_anatinus
ENSCVAG00000012305	prpf38a	100	82.428	ENSOCUG00000000963	PRPF38A	71	90.498	Oryctolagus_cuniculus
ENSCVAG00000012305	prpf38a	100	96.440	ENSORLG00000013485	prpf38a	100	96.440	Oryzias_latipes
ENSCVAG00000012305	prpf38a	100	96.440	ENSORLG00020002130	prpf38a	100	96.440	Oryzias_latipes_hni
ENSCVAG00000012305	prpf38a	100	96.117	ENSORLG00015021393	prpf38a	100	96.271	Oryzias_latipes_hsok
ENSCVAG00000012305	prpf38a	100	96.117	ENSOMEG00000016333	prpf38a	100	96.117	Oryzias_melastigma
ENSCVAG00000012305	prpf38a	100	82.428	ENSOGAG00000005423	PRPF38A	71	90.498	Otolemur_garnettii
ENSCVAG00000012305	prpf38a	100	82.428	ENSOARG00000005373	PRPF38A	71	90.498	Ovis_aries
ENSCVAG00000012305	prpf38a	100	82.428	ENSPPAG00000030905	PRPF38A	71	90.498	Pan_paniscus
ENSCVAG00000012305	prpf38a	93	69.759	ENSPPAG00000033867	-	68	71.041	Pan_paniscus
ENSCVAG00000012305	prpf38a	100	82.428	ENSPPRG00000013268	PRPF38A	71	90.498	Panthera_pardus
ENSCVAG00000012305	prpf38a	100	82.428	ENSPTIG00000015419	PRPF38A	71	90.498	Panthera_tigris_altaica
ENSCVAG00000012305	prpf38a	100	82.428	ENSPTRG00000000739	PRPF38A	74	90.498	Pan_troglodytes
ENSCVAG00000012305	prpf38a	100	82.428	ENSPANG00000015483	PRPF38A	71	90.498	Papio_anubis
ENSCVAG00000012305	prpf38a	100	93.528	ENSPKIG00000011439	prpf38a	72	93.213	Paramormyrops_kingsleyae
ENSCVAG00000012305	prpf38a	100	81.150	ENSPSIG00000017487	PRPF38A	71	88.688	Pelodiscus_sinensis
ENSCVAG00000012305	prpf38a	100	82.428	ENSPEMG00000023277	-	71	90.498	Peromyscus_maniculatus_bairdii
ENSCVAG00000012305	prpf38a	100	80.635	ENSPEMG00000011212	-	70	82.960	Peromyscus_maniculatus_bairdii
ENSCVAG00000012305	prpf38a	100	79.936	ENSPCIG00000022369	-	71	86.937	Phascolarctos_cinereus
ENSCVAG00000012305	prpf38a	100	99.029	ENSPFOG00000004248	prpf38a	100	99.029	Poecilia_formosa
ENSCVAG00000012305	prpf38a	100	99.029	ENSPLAG00000010328	prpf38a	100	99.029	Poecilia_latipinna
ENSCVAG00000012305	prpf38a	100	99.029	ENSPMEG00000011804	prpf38a	100	99.029	Poecilia_mexicana
ENSCVAG00000012305	prpf38a	94	81.063	ENSPREG00000002835	prpf38a	58	98.936	Poecilia_reticulata
ENSCVAG00000012305	prpf38a	100	74.528	ENSPPYG00000001348	PRPF38A	71	79.204	Pongo_abelii
ENSCVAG00000012305	prpf38a	100	82.109	ENSPCAG00000013328	PRPF38A	71	90.045	Procavia_capensis
ENSCVAG00000012305	prpf38a	100	82.428	ENSPCOG00000016387	-	71	90.498	Propithecus_coquereli
ENSCVAG00000012305	prpf38a	100	67.314	ENSPCOG00000020709	-	73	75.113	Propithecus_coquereli
ENSCVAG00000012305	prpf38a	100	82.428	ENSPVAG00000009803	PRPF38A	71	90.498	Pteropus_vampyrus
ENSCVAG00000012305	prpf38a	72	94.118	ENSPNYG00000005571	prpf38a	72	94.118	Pundamilia_nyererei
ENSCVAG00000012305	prpf38a	100	84.026	ENSPNAG00000010399	prpf38a	71	93.665	Pygocentrus_nattereri
ENSCVAG00000012305	prpf38a	100	82.748	ENSRNOG00000009451	Prpf38a	71	90.950	Rattus_norvegicus
ENSCVAG00000012305	prpf38a	100	82.428	ENSRBIG00000036442	PRPF38A	74	90.498	Rhinopithecus_bieti
ENSCVAG00000012305	prpf38a	100	82.428	ENSRROG00000032788	PRPF38A	71	90.498	Rhinopithecus_roxellana
ENSCVAG00000012305	prpf38a	98	71.475	ENSRROG00000040003	-	72	74.208	Rhinopithecus_roxellana
ENSCVAG00000012305	prpf38a	100	82.428	ENSSBOG00000019515	PRPF38A	71	90.498	Saimiri_boliviensis_boliviensis
ENSCVAG00000012305	prpf38a	86	77.206	ENSSHAG00000006906	-	66	84.444	Sarcophilus_harrisii
ENSCVAG00000012305	prpf38a	96	67.224	ENSSHAG00000006029	-	74	77.828	Sarcophilus_harrisii
ENSCVAG00000012305	prpf38a	100	91.935	ENSSFOG00015013572	prpf38a	72	89.189	Scleropages_formosus
ENSCVAG00000012305	prpf38a	99	96.091	ENSSMAG00000015379	prpf38a	99	96.091	Scophthalmus_maximus
ENSCVAG00000012305	prpf38a	100	97.411	ENSSDUG00000001324	prpf38a	100	97.411	Seriola_dumerili
ENSCVAG00000012305	prpf38a	100	97.411	ENSSLDG00000014803	prpf38a	100	97.411	Seriola_lalandi_dorsalis
ENSCVAG00000012305	prpf38a	100	65.495	ENSSARG00000014458	PRPF38A	71	66.516	Sorex_araneus
ENSCVAG00000012305	prpf38a	100	80.831	ENSSPUG00000013259	PRPF38A	71	88.235	Sphenodon_punctatus
ENSCVAG00000012305	prpf38a	83	73.438	ENSSPAG00000010449	prpf38a	69	76.786	Stegastes_partitus
ENSCVAG00000012305	prpf38a	100	82.428	ENSSSCG00000028288	PRPF38A	71	90.498	Sus_scrofa
ENSCVAG00000012305	prpf38a	100	78.275	ENSTGUG00000008995	PRPF38A	71	84.615	Taeniopygia_guttata
ENSCVAG00000012305	prpf38a	72	95.023	ENSTRUG00000003374	prpf38a	68	95.023	Takifugu_rubripes
ENSCVAG00000012305	prpf38a	100	94.534	ENSTNIG00000005533	prpf38a	100	94.534	Tetraodon_nigroviridis
ENSCVAG00000012305	prpf38a	100	81.789	ENSTBEG00000000725	PRPF38A	71	90.498	Tupaia_belangeri
ENSCVAG00000012305	prpf38a	100	82.428	ENSTTRG00000016139	PRPF38A	71	90.498	Tursiops_truncatus
ENSCVAG00000012305	prpf38a	100	82.428	ENSUAMG00000000625	PRPF38A	71	90.498	Ursus_americanus
ENSCVAG00000012305	prpf38a	100	82.428	ENSUMAG00000022674	PRPF38A	71	90.498	Ursus_maritimus
ENSCVAG00000012305	prpf38a	75	89.177	ENSVPAG00000000907	PRPF38A	71	90.045	Vicugna_pacos
ENSCVAG00000012305	prpf38a	100	82.428	ENSVVUG00000004475	PRPF38A	71	90.498	Vulpes_vulpes
ENSCVAG00000012305	prpf38a	100	80.892	ENSXETG00000008060	prpf38a	71	87.783	Xenopus_tropicalis
ENSCVAG00000012305	prpf38a	100	94.534	ENSXCOG00000007393	prpf38a	100	94.534	Xiphophorus_couchianus
ENSCVAG00000012305	prpf38a	100	99.029	ENSXMAG00000026143	prpf38a	100	99.029	Xiphophorus_maculatus