EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000012401 (Gene tree)
Gene ID: 107089246
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 12221 bases
Position: chrKL652744.1:92043-104263
Accession: 107089246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000010251	PRP4	PF08799.11	2.4e-13	1	1
ENSCVAP00000010260	PRP4	PF08799.11	2.6e-13	1	1
ENSCVAP00000026645	PRP4	PF08799.11	2.7e-13	1	1
ENSCVAP00000026645	Prp18	PF02840.15	7.1e-63	1	1
ENSCVAP00000010260	Prp18	PF02840.15	7.4e-63	1	1
ENSCVAP00000010251	Prp18	PF02840.15	7.5e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000016906	-	2460	XM_015381923	ENSCVAP00000026645	350 (aa)	XP_015237409	UPI000742813C
ENSCVAT00000016894	-	963	-	ENSCVAP00000010251	320 (aa)	-	-
ENSCVAT00000016911	-	2433	XM_015381924	ENSCVAP00000010260	341 (aa)	XP_015237410	UPI000742978E

Gene Model

Click here to download ENSCVAG00000012401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000012401's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000012401	prpf18	100	84.503	ENSG00000165630	PRPF18	100	84.503	Homo_sapiens
ENSCVAG00000012401	prpf18	100	94.135	ENSAPOG00000024177	prpf18	100	94.135	Acanthochromis_polyacanthus
ENSCVAG00000012401	prpf18	100	83.918	ENSAMEG00000013591	-	100	83.918	Ailuropoda_melanoleuca
ENSCVAG00000012401	prpf18	100	92.669	ENSACIG00000001186	prpf18	100	92.669	Amphilophus_citrinellus
ENSCVAG00000012401	prpf18	98	94.012	ENSAOCG00000006572	prpf18	94	93.275	Amphiprion_ocellaris
ENSCVAG00000012401	prpf18	100	94.135	ENSAPEG00000004564	prpf18	100	94.135	Amphiprion_percula
ENSCVAG00000012401	prpf18	100	92.962	ENSATEG00000000303	prpf18	100	92.962	Anabas_testudineus
ENSCVAG00000012401	prpf18	99	82.059	ENSAPLG00000003387	-	99	82.059	Anas_platyrhynchos
ENSCVAG00000012401	prpf18	100	83.430	ENSACAG00000000818	-	100	83.430	Anolis_carolinensis
ENSCVAG00000012401	prpf18	100	84.503	ENSANAG00000037445	-	100	84.503	Aotus_nancymaae
ENSCVAG00000012401	prpf18	100	92.375	ENSACLG00000026296	prpf18	100	92.375	Astatotilapia_calliptera
ENSCVAG00000012401	prpf18	100	89.714	ENSAMXG00000012848	prpf18	100	89.714	Astyanax_mexicanus
ENSCVAG00000012401	prpf18	100	83.918	ENSBTAG00000017244	PRPF18	100	83.918	Bos_taurus
ENSCVAG00000012401	prpf18	98	39.655	WBGene00009320	F32B6.3	97	39.655	Caenorhabditis_elegans
ENSCVAG00000012401	prpf18	100	84.503	ENSCJAG00000009432	-	100	84.503	Callithrix_jacchus
ENSCVAG00000012401	prpf18	100	83.918	ENSCAFG00000004735	-	100	83.918	Canis_familiaris
ENSCVAG00000012401	prpf18	100	83.918	ENSCAFG00020007712	-	100	83.918	Canis_lupus_dingo
ENSCVAG00000012401	prpf18	100	83.918	ENSCHIG00000000499	-	100	83.918	Capra_hircus
ENSCVAG00000012401	prpf18	100	83.918	ENSTSYG00000003517	-	100	83.918	Carlito_syrichta
ENSCVAG00000012401	prpf18	100	84.503	ENSCPOG00000021069	-	100	84.503	Cavia_porcellus
ENSCVAG00000012401	prpf18	100	84.503	ENSCCAG00000036822	-	100	84.503	Cebus_capucinus
ENSCVAG00000012401	prpf18	100	73.684	ENSCATG00000016633	-	100	73.684	Cercocebus_atys
ENSCVAG00000012401	prpf18	100	83.918	ENSCLAG00000011770	-	100	83.918	Chinchilla_lanigera
ENSCVAG00000012401	prpf18	100	82.906	ENSCSAG00000013109	-	100	82.906	Chlorocebus_sabaeus
ENSCVAG00000012401	prpf18	100	80.056	ENSCPBG00000003100	-	100	80.899	Chrysemys_picta_bellii
ENSCVAG00000012401	prpf18	99	55.882	ENSCING00000020481	-	97	55.882	Ciona_intestinalis
ENSCVAG00000012401	prpf18	99	55.325	ENSCSAVG00000010546	-	99	55.325	Ciona_savignyi
ENSCVAG00000012401	prpf18	100	84.503	ENSCANG00000034900	-	100	84.503	Colobus_angolensis_palliatus
ENSCVAG00000012401	prpf18	100	83.918	ENSCGRG00001023665	Prpf18	100	83.918	Cricetulus_griseus_chok1gshd
ENSCVAG00000012401	prpf18	100	83.918	ENSCGRG00000014690	Prpf18	100	83.918	Cricetulus_griseus_crigri
ENSCVAG00000012401	prpf18	100	89.150	ENSCSEG00000005536	prpf18	99	89.150	Cynoglossus_semilaevis
ENSCVAG00000012401	prpf18	100	88.889	ENSDARG00000058306	prpf18	100	88.889	Danio_rerio
ENSCVAG00000012401	prpf18	100	83.918	ENSDNOG00000035607	-	100	83.918	Dasypus_novemcinctus
ENSCVAG00000012401	prpf18	100	83.626	ENSDORG00000000858	Prpf18	100	83.626	Dipodomys_ordii
ENSCVAG00000012401	prpf18	99	52.959	FBgn0027784	Prp18	98	52.959	Drosophila_melanogaster
ENSCVAG00000012401	prpf18	100	75.731	ENSETEG00000015060	-	100	75.731	Echinops_telfairi
ENSCVAG00000012401	prpf18	100	69.741	ENSEBUG00000016502	prpf18	99	68.876	Eptatretus_burgeri
ENSCVAG00000012401	prpf18	100	84.211	ENSEASG00005019373	-	100	84.211	Equus_asinus_asinus
ENSCVAG00000012401	prpf18	100	84.211	ENSECAG00000006997	PRPF18	100	84.211	Equus_caballus
ENSCVAG00000012401	prpf18	74	100.000	ENSEEUG00000001171	-	79	100.000	Erinaceus_europaeus
ENSCVAG00000012401	prpf18	100	87.172	ENSELUG00000022190	prpf18	100	87.172	Esox_lucius
ENSCVAG00000012401	prpf18	100	84.211	ENSFCAG00000004436	-	100	84.211	Felis_catus
ENSCVAG00000012401	prpf18	93	79.385	ENSFALG00000001912	-	97	79.692	Ficedula_albicollis
ENSCVAG00000012401	prpf18	94	86.250	ENSFDAG00000014026	-	100	86.250	Fukomys_damarensis
ENSCVAG00000012401	prpf18	99	57.880	ENSFDAG00000010713	-	97	57.880	Fukomys_damarensis
ENSCVAG00000012401	prpf18	80	97.802	ENSFHEG00000020125	prpf18	100	97.802	Fundulus_heteroclitus
ENSCVAG00000012401	prpf18	99	87.059	ENSGMOG00000012210	prpf18	99	87.059	Gadus_morhua
ENSCVAG00000012401	prpf18	100	83.041	ENSGALG00000043593	-	100	83.041	Gallus_gallus
ENSCVAG00000012401	prpf18	100	95.308	ENSGAFG00000006034	prpf18	100	95.308	Gambusia_affinis
ENSCVAG00000012401	prpf18	100	89.150	ENSGACG00000012232	prpf18	100	89.150	Gasterosteus_aculeatus
ENSCVAG00000012401	prpf18	100	83.626	ENSGAGG00000016878	-	100	83.626	Gopherus_agassizii
ENSCVAG00000012401	prpf18	92	83.228	ENSGGOG00000025188	-	96	83.228	Gorilla_gorilla
ENSCVAG00000012401	prpf18	100	92.375	ENSHBUG00000010264	prpf18	100	92.375	Haplochromis_burtoni
ENSCVAG00000012401	prpf18	100	83.918	ENSHGLG00000018534	PRPF18	100	83.918	Heterocephalus_glaber_female
ENSCVAG00000012401	prpf18	94	85.938	ENSHGLG00100012161	-	98	85.938	Heterocephalus_glaber_male
ENSCVAG00000012401	prpf18	100	92.962	ENSHCOG00000015987	prpf18	100	92.962	Hippocampus_comes
ENSCVAG00000012401	prpf18	100	83.003	ENSIPUG00000007432	prpf18	100	83.569	Ictalurus_punctatus
ENSCVAG00000012401	prpf18	100	83.626	ENSSTOG00000008735	-	100	83.626	Ictidomys_tridecemlineatus
ENSCVAG00000012401	prpf18	100	84.503	ENSJJAG00000024041	-	100	84.503	Jaculus_jaculus
ENSCVAG00000012401	prpf18	100	63.665	ENSJJAG00000015191	-	100	63.665	Jaculus_jaculus
ENSCVAG00000012401	prpf18	100	94.135	ENSKMAG00000012124	prpf18	100	94.135	Kryptolebias_marmoratus
ENSCVAG00000012401	prpf18	100	86.510	ENSLBEG00000028466	prpf18	99	87.798	Labrus_bergylta
ENSCVAG00000012401	prpf18	100	83.626	ENSLACG00000009885	prpf18	100	83.918	Latimeria_chalumnae
ENSCVAG00000012401	prpf18	100	87.719	ENSLOCG00000016736	prpf18	100	87.719	Lepisosteus_oculatus
ENSCVAG00000012401	prpf18	100	84.503	ENSLAFG00000007753	-	100	84.503	Loxodonta_africana
ENSCVAG00000012401	prpf18	100	84.503	ENSMFAG00000000540	-	100	84.503	Macaca_fascicularis
ENSCVAG00000012401	prpf18	100	84.503	ENSMMUG00000015071	PRPF18	100	84.503	Macaca_mulatta
ENSCVAG00000012401	prpf18	100	84.503	ENSMNEG00000024679	-	100	84.503	Macaca_nemestrina
ENSCVAG00000012401	prpf18	100	69.298	ENSMLEG00000031715	-	100	69.298	Mandrillus_leucophaeus
ENSCVAG00000012401	prpf18	100	92.669	ENSMAMG00000006610	prpf18	100	92.669	Mastacembelus_armatus
ENSCVAG00000012401	prpf18	100	92.375	ENSMZEG00005019392	prpf18	100	92.375	Maylandia_zebra
ENSCVAG00000012401	prpf18	100	83.041	ENSMGAG00000005023	-	100	83.041	Meleagris_gallopavo
ENSCVAG00000012401	prpf18	100	84.795	ENSMICG00000006572	-	100	84.795	Microcebus_murinus
ENSCVAG00000012401	prpf18	100	84.503	ENSMOCG00000021468	Prpf18	100	84.503	Microtus_ochrogaster
ENSCVAG00000012401	prpf18	100	93.255	ENSMMOG00000013012	prpf18	100	93.255	Mola_mola
ENSCVAG00000012401	prpf18	100	75.731	ENSMODG00000024043	-	100	75.731	Monodelphis_domestica
ENSCVAG00000012401	prpf18	96	78.698	ENSMODG00000016902	-	92	78.698	Monodelphis_domestica
ENSCVAG00000012401	prpf18	100	84.593	ENSMALG00000005486	prpf18	100	84.884	Monopterus_albus
ENSCVAG00000012401	prpf18	100	83.918	MGP_CAROLIEiJ_G0023143	Prpf18	100	94.521	Mus_caroli
ENSCVAG00000012401	prpf18	100	84.211	ENSMUSG00000039449	Prpf18	100	94.521	Mus_musculus
ENSCVAG00000012401	prpf18	100	84.211	MGP_PahariEiJ_G0019203	Prpf18	100	94.521	Mus_pahari
ENSCVAG00000012401	prpf18	100	83.918	MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	Mus_spretus
ENSCVAG00000012401	prpf18	100	83.918	ENSMPUG00000000938	-	100	83.918	Mustela_putorius_furo
ENSCVAG00000012401	prpf18	100	83.626	ENSMLUG00000009200	-	100	83.626	Myotis_lucifugus
ENSCVAG00000012401	prpf18	68	81.897	ENSNGAG00000023550	-	83	81.897	Nannospalax_galili
ENSCVAG00000012401	prpf18	100	84.503	ENSNGAG00000012500	-	100	84.503	Nannospalax_galili
ENSCVAG00000012401	prpf18	100	92.669	ENSNBRG00000001778	prpf18	100	92.669	Neolamprologus_brichardi
ENSCVAG00000012401	prpf18	100	84.503	ENSNLEG00000012186	-	100	84.503	Nomascus_leucogenys
ENSCVAG00000012401	prpf18	76	71.815	ENSMEUG00000005032	-	75	71.815	Notamacropus_eugenii
ENSCVAG00000012401	prpf18	77	64.528	ENSOPRG00000002153	-	100	64.528	Ochotona_princeps
ENSCVAG00000012401	prpf18	100	83.626	ENSODEG00000003770	-	100	83.626	Octodon_degus
ENSCVAG00000012401	prpf18	98	91.916	ENSONIG00000014854	prpf18	96	91.916	Oreochromis_niloticus
ENSCVAG00000012401	prpf18	100	84.211	ENSOANG00000015404	-	100	84.211	Ornithorhynchus_anatinus
ENSCVAG00000012401	prpf18	100	84.211	ENSOCUG00000027756	-	96	85.015	Oryctolagus_cuniculus
ENSCVAG00000012401	prpf18	100	90.286	ENSORLG00000010293	prpf18	100	90.286	Oryzias_latipes
ENSCVAG00000012401	prpf18	100	90.909	ENSORLG00020001530	prpf18	100	90.909	Oryzias_latipes_hni
ENSCVAG00000012401	prpf18	100	90.616	ENSORLG00015013705	prpf18	100	90.616	Oryzias_latipes_hsok
ENSCVAG00000012401	prpf18	100	92.375	ENSOMEG00000009167	prpf18	100	92.375	Oryzias_melastigma
ENSCVAG00000012401	prpf18	100	83.626	ENSOGAG00000007294	-	100	83.626	Otolemur_garnettii
ENSCVAG00000012401	prpf18	100	82.336	ENSOARG00000006243	-	100	82.336	Ovis_aries
ENSCVAG00000012401	prpf18	100	84.503	ENSPPAG00000041959	-	100	84.503	Pan_paniscus
ENSCVAG00000012401	prpf18	100	84.211	ENSPPRG00000000107	-	100	84.211	Panthera_pardus
ENSCVAG00000012401	prpf18	100	84.211	ENSPTIG00000021094	-	100	84.211	Panthera_tigris_altaica
ENSCVAG00000012401	prpf18	100	84.503	ENSPTRG00000002306	PRPF18	100	84.503	Pan_troglodytes
ENSCVAG00000012401	prpf18	100	84.211	ENSPANG00000023346	-	100	84.211	Papio_anubis
ENSCVAG00000012401	prpf18	100	86.610	ENSPKIG00000014128	prpf18	96	86.610	Paramormyrops_kingsleyae
ENSCVAG00000012401	prpf18	100	83.626	ENSPSIG00000016064	-	100	83.626	Pelodiscus_sinensis
ENSCVAG00000012401	prpf18	100	85.802	ENSPMGG00000016486	prpf18	100	85.802	Periophthalmus_magnuspinnatus
ENSCVAG00000012401	prpf18	100	84.211	ENSPEMG00000013704	Prpf18	100	84.211	Peromyscus_maniculatus_bairdii
ENSCVAG00000012401	prpf18	100	73.429	ENSPMAG00000000204	prpf18	100	73.429	Petromyzon_marinus
ENSCVAG00000012401	prpf18	92	82.911	ENSPCIG00000012963	-	99	82.911	Phascolarctos_cinereus
ENSCVAG00000012401	prpf18	100	96.571	ENSPFOG00000017611	prpf18	100	96.571	Poecilia_formosa
ENSCVAG00000012401	prpf18	100	96.481	ENSPLAG00000000369	prpf18	100	96.481	Poecilia_latipinna
ENSCVAG00000012401	prpf18	100	96.857	ENSPMEG00000005183	prpf18	100	96.857	Poecilia_mexicana
ENSCVAG00000012401	prpf18	100	95.601	ENSPREG00000015232	prpf18	100	95.601	Poecilia_reticulata
ENSCVAG00000012401	prpf18	100	84.211	ENSPPYG00000002101	PRPF18	100	84.211	Pongo_abelii
ENSCVAG00000012401	prpf18	100	66.667	ENSPCAG00000010833	-	100	66.667	Procavia_capensis
ENSCVAG00000012401	prpf18	100	80.059	ENSPCOG00000013057	-	100	80.059	Propithecus_coquereli
ENSCVAG00000012401	prpf18	88	68.116	ENSPVAG00000002947	-	100	51.170	Pteropus_vampyrus
ENSCVAG00000012401	prpf18	100	92.082	ENSPNYG00000003554	prpf18	100	92.082	Pundamilia_nyererei
ENSCVAG00000012401	prpf18	100	87.179	ENSPNAG00000023151	prpf18	100	87.179	Pygocentrus_nattereri
ENSCVAG00000012401	prpf18	100	83.918	ENSRNOG00000018396	Prpf18	100	83.918	Rattus_norvegicus
ENSCVAG00000012401	prpf18	100	84.795	ENSRBIG00000028028	-	100	84.795	Rhinopithecus_bieti
ENSCVAG00000012401	prpf18	100	84.503	ENSRROG00000040695	-	100	84.503	Rhinopithecus_roxellana
ENSCVAG00000012401	prpf18	100	84.503	ENSSBOG00000034482	-	100	84.503	Saimiri_boliviensis_boliviensis
ENSCVAG00000012401	prpf18	100	83.918	ENSSHAG00000016463	-	100	83.918	Sarcophilus_harrisii
ENSCVAG00000012401	prpf18	100	69.883	ENSSHAG00000009669	-	100	69.883	Sarcophilus_harrisii
ENSCVAG00000012401	prpf18	76	48.148	ENSSFOG00015021154	-	89	51.887	Scleropages_formosus
ENSCVAG00000012401	prpf18	98	84.348	ENSSFOG00015022118	prpf18	100	80.851	Scleropages_formosus
ENSCVAG00000012401	prpf18	100	90.323	ENSSMAG00000005308	prpf18	100	90.323	Scophthalmus_maximus
ENSCVAG00000012401	prpf18	100	93.548	ENSSDUG00000015428	prpf18	100	93.548	Seriola_dumerili
ENSCVAG00000012401	prpf18	100	93.842	ENSSLDG00000023989	prpf18	100	93.842	Seriola_lalandi_dorsalis
ENSCVAG00000012401	prpf18	84	74.380	ENSSARG00000005307	-	100	55.848	Sorex_araneus
ENSCVAG00000012401	prpf18	100	83.626	ENSSPUG00000002619	-	100	83.626	Sphenodon_punctatus
ENSCVAG00000012401	prpf18	100	93.548	ENSSPAG00000019502	prpf18	100	93.548	Stegastes_partitus
ENSCVAG00000012401	prpf18	100	83.918	ENSSSCG00000026354	-	100	83.918	Sus_scrofa
ENSCVAG00000012401	prpf18	100	82.749	ENSTGUG00000002286	-	100	82.749	Taeniopygia_guttata
ENSCVAG00000012401	prpf18	100	89.150	ENSTRUG00000011278	prpf18	100	89.150	Takifugu_rubripes
ENSCVAG00000012401	prpf18	100	88.856	ENSTNIG00000000911	prpf18	100	88.856	Tetraodon_nigroviridis
ENSCVAG00000012401	prpf18	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSCVAG00000012401	prpf18	100	84.795	ENSTTRG00000011117	PRPF18	100	84.795	Tursiops_truncatus
ENSCVAG00000012401	prpf18	91	86.817	ENSUAMG00000001815	-	93	86.817	Ursus_americanus
ENSCVAG00000012401	prpf18	100	79.240	ENSUMAG00000012329	-	100	79.240	Ursus_maritimus
ENSCVAG00000012401	prpf18	100	78.363	ENSVPAG00000011486	-	100	78.363	Vicugna_pacos
ENSCVAG00000012401	prpf18	100	83.918	ENSVVUG00000005453	-	100	83.918	Vulpes_vulpes
ENSCVAG00000012401	prpf18	100	75.362	ENSXETG00000024057	prpf18	100	75.072	Xenopus_tropicalis
ENSCVAG00000012401	prpf18	100	96.210	ENSXCOG00000020414	prpf18	100	96.210	Xiphophorus_couchianus
ENSCVAG00000012401	prpf18	100	96.857	ENSXMAG00000004713	prpf18	91	96.857	Xiphophorus_maculatus