EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000012600 (Gene tree)
Gene ID: 107083689
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 7696 bases
Position: chrKL652580.1:1124954-1132649
Accession: 107083689
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000010487	RRM_1	PF00076.22	5e-61	1	4
ENSCVAP00000010487	RRM_1	PF00076.22	5e-61	2	4
ENSCVAP00000010487	RRM_1	PF00076.22	5e-61	3	4
ENSCVAP00000010487	RRM_1	PF00076.22	5e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000017169	-	4121	XM_015373092	ENSCVAP00000010487	685 (aa)	XP_015228578	UPI000742B586

Gene Model

Click here to download ENSCVAG00000012600's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000012600's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000012600	ncl	51	31.551	ENSCVAG00000015943	-	80	32.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000012600	ncl	61	83.095	ENSAPOG00000023888	ncl	52	84.140	Acanthochromis_polyacanthus
ENSCVAG00000012600	ncl	60	41.763	ENSAPOG00000014534	-	66	43.152	Acanthochromis_polyacanthus
ENSCVAG00000012600	ncl	55	76.064	ENSACIG00000013234	ncl	62	76.613	Amphilophus_citrinellus
ENSCVAG00000012600	ncl	58	41.446	ENSAOCG00000014792	-	60	42.559	Amphiprion_ocellaris
ENSCVAG00000012600	ncl	61	82.938	ENSAOCG00000003133	ncl	52	84.677	Amphiprion_ocellaris
ENSCVAG00000012600	ncl	58	41.687	ENSAPEG00000013612	-	60	42.820	Amphiprion_percula
ENSCVAG00000012600	ncl	61	82.660	ENSAPEG00000002769	ncl	52	84.677	Amphiprion_percula
ENSCVAG00000012600	ncl	67	78.788	ENSATEG00000013343	ncl	53	82.258	Anabas_testudineus
ENSCVAG00000012600	ncl	69	42.713	ENSATEG00000019862	-	79	45.692	Anabas_testudineus
ENSCVAG00000012600	ncl	54	57.592	ENSAPLG00000012897	-	63	58.575	Anas_platyrhynchos
ENSCVAG00000012600	ncl	54	61.942	ENSACAG00000001006	-	63	64.368	Anolis_carolinensis
ENSCVAG00000012600	ncl	54	68.883	ENSAMXG00000001647	ncl	82	71.382	Astyanax_mexicanus
ENSCVAG00000012600	ncl	54	42.473	ENSCHIG00000012665	-	53	42.175	Capra_hircus
ENSCVAG00000012600	ncl	61	60.046	ENSCPBG00000016444	-	56	61.702	Chrysemys_picta_bellii
ENSCVAG00000012600	ncl	58	80.802	ENSCSEG00000015089	ncl	54	81.117	Cynoglossus_semilaevis
ENSCVAG00000012600	ncl	61	74.941	ENSDARG00000002710	ncl	79	78.065	Danio_rerio
ENSCVAG00000012600	ncl	51	48.138	ENSDNOG00000040257	-	57	47.536	Dasypus_novemcinctus
ENSCVAG00000012600	ncl	53	45.082	ENSDNOG00000031611	-	65	45.082	Dasypus_novemcinctus
ENSCVAG00000012600	ncl	61	71.765	ENSELUG00000006033	ncl	56	72.533	Esox_lucius
ENSCVAG00000012600	ncl	58	47.549	ENSELUG00000022826	-	80	48.649	Esox_lucius
ENSCVAG00000012600	ncl	67	82.133	ENSFHEG00000018000	ncl	66	76.178	Fundulus_heteroclitus
ENSCVAG00000012600	ncl	69	66.667	ENSGMOG00000001341	ncl	58	66.216	Gadus_morhua
ENSCVAG00000012600	ncl	54	59.530	ENSGALG00000032930	NCL	55	59.211	Gallus_gallus
ENSCVAG00000012600	ncl	90	67.250	ENSGACG00000008970	ncl	61	77.540	Gasterosteus_aculeatus
ENSCVAG00000012600	ncl	54	62.632	ENSGAGG00000013330	-	55	62.500	Gopherus_agassizii
ENSCVAG00000012600	ncl	54	77.568	ENSHBUG00000006869	ncl	52	77.657	Haplochromis_burtoni
ENSCVAG00000012600	ncl	61	78.689	ENSHCOG00000010234	ncl	52	79.839	Hippocampus_comes
ENSCVAG00000012600	ncl	61	81.579	ENSKMAG00000008111	ncl	53	83.019	Kryptolebias_marmoratus
ENSCVAG00000012600	ncl	53	42.408	ENSLBEG00000014278	-	80	42.975	Labrus_bergylta
ENSCVAG00000012600	ncl	57	42.927	ENSLBEG00000007915	-	65	43.478	Labrus_bergylta
ENSCVAG00000012600	ncl	61	81.818	ENSLBEG00000019073	ncl	56	83.065	Labrus_bergylta
ENSCVAG00000012600	ncl	58	51.870	ENSLACG00000022167	-	76	54.213	Latimeria_chalumnae
ENSCVAG00000012600	ncl	66	62.069	ENSLACG00000009328	ncl	53	68.347	Latimeria_chalumnae
ENSCVAG00000012600	ncl	52	69.274	ENSLOCG00000004828	ncl	50	68.378	Lepisosteus_oculatus
ENSCVAG00000012600	ncl	58	42.092	ENSMAMG00000003479	-	69	41.470	Mastacembelus_armatus
ENSCVAG00000012600	ncl	61	76.190	ENSMZEG00005017438	ncl	52	77.657	Maylandia_zebra
ENSCVAG00000012600	ncl	53	59.341	ENSMGAG00000008147	-	83	61.261	Meleagris_gallopavo
ENSCVAG00000012600	ncl	55	56.566	ENSMODG00000002470	-	54	56.443	Monodelphis_domestica
ENSCVAG00000012600	ncl	90	68.339	ENSMALG00000014827	ncl	58	80.912	Monopterus_albus
ENSCVAG00000012600	ncl	54	77.568	ENSONIG00000012508	ncl	52	77.657	Oreochromis_niloticus
ENSCVAG00000012600	ncl	52	53.750	ENSONIG00000010631	-	97	34.884	Oreochromis_niloticus
ENSCVAG00000012600	ncl	73	59.553	ENSOANG00000008732	-	61	60.207	Ornithorhynchus_anatinus
ENSCVAG00000012600	ncl	56	38.131	ENSORLG00000004645	-	82	38.095	Oryzias_latipes
ENSCVAG00000012600	ncl	53	81.471	ENSORLG00000007055	ncl	71	81.365	Oryzias_latipes
ENSCVAG00000012600	ncl	56	38.384	ENSORLG00020003497	-	73	38.360	Oryzias_latipes_hni
ENSCVAG00000012600	ncl	61	76.259	ENSORLG00015013815	ncl	86	82.051	Oryzias_latipes_hsok
ENSCVAG00000012600	ncl	56	38.384	ENSORLG00015006613	-	78	38.360	Oryzias_latipes_hsok
ENSCVAG00000012600	ncl	56	36.160	ENSOMEG00000015864	-	81	36.772	Oryzias_melastigma
ENSCVAG00000012600	ncl	61	73.460	ENSPKIG00000002604	ncl	52	74.394	Paramormyrops_kingsleyae
ENSCVAG00000012600	ncl	55	61.183	ENSPSIG00000002361	-	54	61.299	Pelodiscus_sinensis
ENSCVAG00000012600	ncl	61	74.641	ENSPMGG00000004709	ncl	84	75.884	Periophthalmus_magnuspinnatus
ENSCVAG00000012600	ncl	56	56.965	ENSPCIG00000003293	-	56	57.107	Phascolarctos_cinereus
ENSCVAG00000012600	ncl	77	84.764	ENSPFOG00000024205	ncl	73	86.649	Poecilia_formosa
ENSCVAG00000012600	ncl	67	85.776	ENSPMEG00000006000	ncl	72	87.139	Poecilia_mexicana
ENSCVAG00000012600	ncl	61	76.190	ENSPNYG00000020494	ncl	53	77.657	Pundamilia_nyererei
ENSCVAG00000012600	ncl	61	71.327	ENSPNAG00000006192	ncl	51	72.000	Pygocentrus_nattereri
ENSCVAG00000012600	ncl	54	52.604	ENSSHAG00000002702	-	59	53.125	Sarcophilus_harrisii
ENSCVAG00000012600	ncl	57	41.714	ENSSFOG00015013153	-	78	43.689	Scleropages_formosus
ENSCVAG00000012600	ncl	64	71.041	ENSSFOG00015008583	ncl	58	76.550	Scleropages_formosus
ENSCVAG00000012600	ncl	56	43.434	ENSSMAG00000007582	-	61	44.063	Scophthalmus_maximus
ENSCVAG00000012600	ncl	61	79.669	ENSSMAG00000021241	ncl	53	81.818	Scophthalmus_maximus
ENSCVAG00000012600	ncl	61	81.754	ENSSDUG00000006128	ncl	85	83.065	Seriola_dumerili
ENSCVAG00000012600	ncl	72	37.121	ENSSDUG00000010922	-	70	41.995	Seriola_dumerili
ENSCVAG00000012600	ncl	56	41.960	ENSSLDG00000015784	-	64	42.216	Seriola_lalandi_dorsalis
ENSCVAG00000012600	ncl	61	82.464	ENSSLDG00000002012	ncl	53	83.333	Seriola_lalandi_dorsalis
ENSCVAG00000012600	ncl	72	51.782	ENSSPUG00000008244	-	60	59.241	Sphenodon_punctatus
ENSCVAG00000012600	ncl	58	43.521	ENSSPAG00000001859	-	60	43.421	Stegastes_partitus
ENSCVAG00000012600	ncl	54	59.424	ENSTGUG00000009782	-	60	59.894	Taeniopygia_guttata
ENSCVAG00000012600	ncl	54	61.538	ENSXETG00000009517	ncl	53	62.567	Xenopus_tropicalis
ENSCVAG00000012600	ncl	58	53.274	ENSXCOG00000003524	ncl	88	68.464	Xiphophorus_couchianus
ENSCVAG00000012600	ncl	55	39.211	ENSXCOG00000007369	-	91	38.992	Xiphophorus_couchianus
ENSCVAG00000012600	ncl	77	88.060	ENSXMAG00000005914	ncl	66	87.927	Xiphophorus_maculatus