EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000012789 (Gene tree)
Gene ID: 107097637
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 16961 bases
Position: chrKL653212.1:182340-199300
Accession: 107097637
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000010631	EST1	PF10374.9	3.9e-12	1	1
ENSCVAP00000010631	EST1_DNA_bind	PF10373.9	6.9e-57	1	1
ENSCVAP00000010631	PIN_4	PF13638.6	7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000017386	-	7232	XM_015394861	ENSCVAP00000010631	1625 (aa)	XP_015250347	UPI000742604E

Gene Model

Click here to download ENSCVAG00000012789's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000012789's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000012789	smg6	74	53.678	ENSG00000070366	SMG6	100	57.559	Homo_sapiens
ENSCVAG00000012789	smg6	100	70.439	ENSAPOG00000019448	smg6	100	70.878	Acanthochromis_polyacanthus
ENSCVAG00000012789	smg6	74	53.961	ENSAMEG00000007632	SMG6	72	57.647	Ailuropoda_melanoleuca
ENSCVAG00000012789	smg6	93	68.155	ENSACIG00000012997	smg6	100	68.544	Amphilophus_citrinellus
ENSCVAG00000012789	smg6	100	71.325	ENSAOCG00000002630	smg6	100	72.005	Amphiprion_ocellaris
ENSCVAG00000012789	smg6	100	71.024	ENSAPEG00000019101	smg6	100	71.704	Amphiprion_percula
ENSCVAG00000012789	smg6	100	68.033	ENSATEG00000006483	smg6	100	68.314	Anabas_testudineus
ENSCVAG00000012789	smg6	65	48.266	ENSACAG00000011783	SMG6	87	47.513	Anolis_carolinensis
ENSCVAG00000012789	smg6	74	53.510	ENSANAG00000035760	SMG6	72	57.557	Aotus_nancymaae
ENSCVAG00000012789	smg6	100	69.052	ENSACLG00000005288	smg6	100	69.453	Astatotilapia_calliptera
ENSCVAG00000012789	smg6	84	65.492	ENSAMXG00000017326	smg6	88	65.088	Astyanax_mexicanus
ENSCVAG00000012789	smg6	74	54.474	ENSBTAG00000000267	SMG6	72	57.985	Bos_taurus
ENSCVAG00000012789	smg6	74	53.720	ENSCJAG00000001820	SMG6	72	57.518	Callithrix_jacchus
ENSCVAG00000012789	smg6	74	54.239	ENSCAFG00000019260	SMG6	72	57.713	Canis_familiaris
ENSCVAG00000012789	smg6	74	54.239	ENSCAFG00020009770	SMG6	72	57.713	Canis_lupus_dingo
ENSCVAG00000012789	smg6	76	53.893	ENSCHIG00000021998	SMG6	85	53.058	Capra_hircus
ENSCVAG00000012789	smg6	86	53.463	ENSTSYG00000003406	SMG6	100	57.350	Carlito_syrichta
ENSCVAG00000012789	smg6	74	44.882	ENSCAPG00000016197	SMG6	73	47.237	Cavia_aperea
ENSCVAG00000012789	smg6	86	52.804	ENSCPOG00000014878	SMG6	84	59.716	Cavia_porcellus
ENSCVAG00000012789	smg6	74	53.490	ENSCCAG00000035801	SMG6	72	57.285	Cebus_capucinus
ENSCVAG00000012789	smg6	74	53.260	ENSCATG00000031956	SMG6	74	56.567	Cercocebus_atys
ENSCVAG00000012789	smg6	74	53.110	ENSCLAG00000006748	SMG6	90	56.769	Chinchilla_lanigera
ENSCVAG00000012789	smg6	74	53.496	ENSCSAG00000013800	SMG6	74	56.830	Chlorocebus_sabaeus
ENSCVAG00000012789	smg6	99	53.490	ENSCPBG00000020369	SMG6	71	56.833	Chrysemys_picta_bellii
ENSCVAG00000012789	smg6	74	53.580	ENSCANG00000031764	SMG6	100	57.895	Colobus_angolensis_palliatus
ENSCVAG00000012789	smg6	74	48.281	ENSCGRG00000007782	Smg6	72	52.593	Cricetulus_griseus_crigri
ENSCVAG00000012789	smg6	100	64.221	ENSCSEG00000012757	smg6	100	63.343	Cynoglossus_semilaevis
ENSCVAG00000012789	smg6	100	55.475	ENSDARG00000100481	smg6	100	55.003	Danio_rerio
ENSCVAG00000012789	smg6	74	53.276	ENSDNOG00000048283	SMG6	72	57.376	Dasypus_novemcinctus
ENSCVAG00000012789	smg6	86	50.351	ENSDORG00000016614	Smg6	84	60.190	Dipodomys_ordii
ENSCVAG00000012789	smg6	67	87.500	ENSETEG00000016790	SMG6	65	87.500	Echinops_telfairi
ENSCVAG00000012789	smg6	60	47.703	ENSEBUG00000005059	smg6	63	47.198	Eptatretus_burgeri
ENSCVAG00000012789	smg6	74	54.071	ENSEASG00005009318	SMG6	71	57.752	Equus_asinus_asinus
ENSCVAG00000012789	smg6	74	54.071	ENSECAG00000006519	SMG6	71	57.752	Equus_caballus
ENSCVAG00000012789	smg6	74	46.232	ENSEEUG00000003493	SMG6	70	57.466	Erinaceus_europaeus
ENSCVAG00000012789	smg6	91	68.440	ENSELUG00000005934	smg6	94	67.036	Esox_lucius
ENSCVAG00000012789	smg6	74	53.901	ENSFCAG00000028817	SMG6	72	57.804	Felis_catus
ENSCVAG00000012789	smg6	79	52.580	ENSFALG00000006538	SMG6	89	51.849	Ficedula_albicollis
ENSCVAG00000012789	smg6	86	53.364	ENSFDAG00000015106	SMG6	84	59.242	Fukomys_damarensis
ENSCVAG00000012789	smg6	100	83.804	ENSFHEG00000013282	smg6	100	83.742	Fundulus_heteroclitus
ENSCVAG00000012789	smg6	77	52.857	ENSGALG00000003108	SMG6	85	51.727	Gallus_gallus
ENSCVAG00000012789	smg6	100	82.659	ENSGAFG00000000379	smg6	100	82.537	Gambusia_affinis
ENSCVAG00000012789	smg6	77	73.825	ENSGACG00000020521	smg6	96	72.771	Gasterosteus_aculeatus
ENSCVAG00000012789	smg6	74	52.853	ENSGAGG00000025617	SMG6	73	56.109	Gopherus_agassizii
ENSCVAG00000012789	smg6	74	53.653	ENSGGOG00000017156	SMG6	72	57.466	Gorilla_gorilla
ENSCVAG00000012789	smg6	100	68.978	ENSHBUG00000021311	smg6	100	68.937	Haplochromis_burtoni
ENSCVAG00000012789	smg6	86	53.276	ENSHGLG00000012882	SMG6	90	56.332	Heterocephalus_glaber_female
ENSCVAG00000012789	smg6	86	53.390	ENSHGLG00100017815	SMG6	90	56.332	Heterocephalus_glaber_male
ENSCVAG00000012789	smg6	65	68.178	ENSHCOG00000008761	smg6	83	67.163	Hippocampus_comes
ENSCVAG00000012789	smg6	100	52.538	ENSIPUG00000012493	smg6	100	51.144	Ictalurus_punctatus
ENSCVAG00000012789	smg6	74	53.552	ENSSTOG00000028127	SMG6	84	59.716	Ictidomys_tridecemlineatus
ENSCVAG00000012789	smg6	66	50.473	ENSJJAG00000015367	Smg6	62	54.047	Jaculus_jaculus
ENSCVAG00000012789	smg6	100	70.796	ENSKMAG00000000279	smg6	100	70.557	Kryptolebias_marmoratus
ENSCVAG00000012789	smg6	100	67.503	ENSLBEG00000002184	smg6	100	67.443	Labrus_bergylta
ENSCVAG00000012789	smg6	74	53.636	ENSLAFG00000001261	SMG6	72	56.948	Loxodonta_africana
ENSCVAG00000012789	smg6	74	53.496	ENSMFAG00000003394	SMG6	74	56.830	Macaca_fascicularis
ENSCVAG00000012789	smg6	74	53.417	ENSMMUG00000023161	SMG6	74	56.743	Macaca_mulatta
ENSCVAG00000012789	smg6	74	51.099	ENSMNEG00000044592	SMG6	71	55.113	Macaca_nemestrina
ENSCVAG00000012789	smg6	100	68.014	ENSMAMG00000020119	smg6	100	69.048	Mastacembelus_armatus
ENSCVAG00000012789	smg6	100	68.933	ENSMZEG00005024736	smg6	100	68.471	Maylandia_zebra
ENSCVAG00000012789	smg6	53	50.000	ENSMGAG00000005401	-	81	48.649	Meleagris_gallopavo
ENSCVAG00000012789	smg6	86	54.082	ENSMICG00000012913	SMG6	72	57.790	Microcebus_murinus
ENSCVAG00000012789	smg6	100	62.959	ENSMMOG00000010883	smg6	100	63.680	Mola_mola
ENSCVAG00000012789	smg6	89	54.319	ENSMODG00000010622	SMG6	72	58.702	Monodelphis_domestica
ENSCVAG00000012789	smg6	100	67.044	ENSMALG00000001106	smg6	100	66.865	Monopterus_albus
ENSCVAG00000012789	smg6	74	52.991	MGP_CAROLIEiJ_G0016729	Smg6	87	67.619	Mus_caroli
ENSCVAG00000012789	smg6	74	53.313	ENSMUSG00000038290	Smg6	87	67.937	Mus_musculus
ENSCVAG00000012789	smg6	86	53.108	MGP_PahariEiJ_G0017866	Smg6	87	67.619	Mus_pahari
ENSCVAG00000012789	smg6	74	53.235	MGP_SPRETEiJ_G0017572	Smg6	87	67.619	Mus_spretus
ENSCVAG00000012789	smg6	74	54.050	ENSMPUG00000013046	SMG6	72	57.738	Mustela_putorius_furo
ENSCVAG00000012789	smg6	86	54.209	ENSMLUG00000005739	SMG6	72	58.009	Myotis_lucifugus
ENSCVAG00000012789	smg6	74	53.412	ENSNGAG00000007287	Smg6	90	56.087	Nannospalax_galili
ENSCVAG00000012789	smg6	97	66.605	ENSNBRG00000009511	smg6	99	67.855	Neolamprologus_brichardi
ENSCVAG00000012789	smg6	74	53.768	ENSNLEG00000017171	SMG6	100	57.559	Nomascus_leucogenys
ENSCVAG00000012789	smg6	74	54.474	ENSMEUG00000015804	SMG6	73	57.942	Notamacropus_eugenii
ENSCVAG00000012789	smg6	51	62.304	ENSOPRG00000000579	SMG6	79	62.500	Ochotona_princeps
ENSCVAG00000012789	smg6	86	47.619	ENSODEG00000008038	SMG6	81	54.070	Octodon_degus
ENSCVAG00000012789	smg6	100	68.456	ENSONIG00000005594	smg6	99	73.479	Oreochromis_niloticus
ENSCVAG00000012789	smg6	74	53.468	ENSOCUG00000013018	SMG6	72	57.466	Oryctolagus_cuniculus
ENSCVAG00000012789	smg6	100	64.896	ENSORLG00000003317	smg6	100	65.075	Oryzias_latipes
ENSCVAG00000012789	smg6	100	64.875	ENSORLG00020015343	smg6	100	65.293	Oryzias_latipes_hni
ENSCVAG00000012789	smg6	100	65.173	ENSORLG00015020454	smg6	100	65.394	Oryzias_latipes_hsok
ENSCVAG00000012789	smg6	100	66.427	ENSOMEG00000010838	smg6	100	66.367	Oryzias_melastigma
ENSCVAG00000012789	smg6	74	53.846	ENSOGAG00000004483	SMG6	72	57.919	Otolemur_garnettii
ENSCVAG00000012789	smg6	76	54.011	ENSOARG00000015076	SMG6	87	53.058	Ovis_aries
ENSCVAG00000012789	smg6	74	53.454	ENSPPAG00000043296	SMG6	72	57.376	Pan_paniscus
ENSCVAG00000012789	smg6	74	53.901	ENSPPRG00000014581	SMG6	72	57.804	Panthera_pardus
ENSCVAG00000012789	smg6	74	53.901	ENSPTIG00000008925	SMG6	100	58.076	Panthera_tigris_altaica
ENSCVAG00000012789	smg6	74	53.563	ENSPTRG00000008544	SMG6	100	57.559	Pan_troglodytes
ENSCVAG00000012789	smg6	74	53.459	ENSPANG00000024588	SMG6	74	56.743	Papio_anubis
ENSCVAG00000012789	smg6	65	52.453	ENSPSIG00000006660	SMG6	80	52.240	Pelodiscus_sinensis
ENSCVAG00000012789	smg6	95	76.228	ENSPMGG00000000844	smg6	100	75.798	Periophthalmus_magnuspinnatus
ENSCVAG00000012789	smg6	74	53.810	ENSPEMG00000020707	Smg6	92	56.579	Peromyscus_maniculatus_bairdii
ENSCVAG00000012789	smg6	100	83.190	ENSPFOG00000012035	smg6	100	85.041	Poecilia_formosa
ENSCVAG00000012789	smg6	100	83.252	ENSPLAG00000017660	smg6	100	82.945	Poecilia_latipinna
ENSCVAG00000012789	smg6	100	83.190	ENSPMEG00000000258	smg6	100	83.006	Poecilia_mexicana
ENSCVAG00000012789	smg6	100	83.067	ENSPREG00000010066	smg6	100	82.883	Poecilia_reticulata
ENSCVAG00000012789	smg6	74	49.804	ENSPPYG00000007790	SMG6	74	52.056	Pongo_abelii
ENSCVAG00000012789	smg6	70	59.368	ENSPCAG00000000552	SMG6	68	58.876	Procavia_capensis
ENSCVAG00000012789	smg6	74	53.846	ENSPCOG00000020925	SMG6	72	57.790	Propithecus_coquereli
ENSCVAG00000012789	smg6	70	62.166	ENSPVAG00000002159	SMG6	68	61.735	Pteropus_vampyrus
ENSCVAG00000012789	smg6	93	66.281	ENSPNYG00000024151	smg6	99	67.591	Pundamilia_nyererei
ENSCVAG00000012789	smg6	74	58.659	ENSPNAG00000015480	smg6	98	69.444	Pygocentrus_nattereri
ENSCVAG00000012789	smg6	86	53.125	ENSRNOG00000003041	Smg6	87	67.937	Rattus_norvegicus
ENSCVAG00000012789	smg6	74	53.774	ENSRBIG00000024746	SMG6	74	57.180	Rhinopithecus_bieti
ENSCVAG00000012789	smg6	74	53.774	ENSRROG00000030423	SMG6	100	57.895	Rhinopithecus_roxellana
ENSCVAG00000012789	smg6	74	53.569	ENSSBOG00000022518	SMG6	72	55.475	Saimiri_boliviensis_boliviensis
ENSCVAG00000012789	smg6	74	54.567	ENSSHAG00000010045	SMG6	72	58.543	Sarcophilus_harrisii
ENSCVAG00000012789	smg6	100	49.555	ENSSFOG00015005436	smg6	100	50.140	Scleropages_formosus
ENSCVAG00000012789	smg6	100	66.885	ENSSMAG00000019777	smg6	100	66.388	Scophthalmus_maximus
ENSCVAG00000012789	smg6	100	70.142	ENSSDUG00000016412	smg6	100	70.143	Seriola_dumerili
ENSCVAG00000012789	smg6	90	69.909	ENSSLDG00000020747	smg6	98	70.039	Seriola_lalandi_dorsalis
ENSCVAG00000012789	smg6	74	53.312	ENSSPUG00000007152	SMG6	72	56.718	Sphenodon_punctatus
ENSCVAG00000012789	smg6	100	71.119	ENSSPAG00000015633	smg6	100	71.721	Stegastes_partitus
ENSCVAG00000012789	smg6	74	54.056	ENSSSCG00000017826	SMG6	72	58.076	Sus_scrofa
ENSCVAG00000012789	smg6	77	52.656	ENSTGUG00000005836	SMG6	73	56.732	Taeniopygia_guttata
ENSCVAG00000012789	smg6	92	63.858	ENSTRUG00000000358	smg6	98	63.946	Takifugu_rubripes
ENSCVAG00000012789	smg6	90	73.080	ENSTNIG00000016164	smg6	99	73.001	Tetraodon_nigroviridis
ENSCVAG00000012789	smg6	74	51.141	ENSTBEG00000011424	SMG6	72	54.727	Tupaia_belangeri
ENSCVAG00000012789	smg6	66	56.596	ENSTTRG00000001175	SMG6	63	55.446	Tursiops_truncatus
ENSCVAG00000012789	smg6	74	54.105	ENSUAMG00000025152	SMG6	74	57.532	Ursus_americanus
ENSCVAG00000012789	smg6	74	54.069	ENSUMAG00000009306	SMG6	74	57.623	Ursus_maritimus
ENSCVAG00000012789	smg6	60	95.833	ENSVPAG00000000225	SMG6	57	95.833	Vicugna_pacos
ENSCVAG00000012789	smg6	74	54.735	ENSVVUG00000021727	SMG6	78	56.119	Vulpes_vulpes
ENSCVAG00000012789	smg6	66	53.321	ENSXETG00000023799	SMG6	76	51.911	Xenopus_tropicalis
ENSCVAG00000012789	smg6	98	79.700	ENSXCOG00000009867	smg6	98	79.634	Xiphophorus_couchianus
ENSCVAG00000012789	smg6	100	82.945	ENSXMAG00000010321	smg6	100	82.761	Xiphophorus_maculatus