EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000012967 (Gene tree)
Gene ID: 107086926
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 72476 bases
Position: chrKL652666.1:967273-1039748
Accession: 107086926
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000026988	PPR	PF01535.20	2.7e-37	1	6
ENSCVAP00000026988	PPR	PF01535.20	2.7e-37	2	6
ENSCVAP00000026988	PPR	PF01535.20	2.7e-37	3	6
ENSCVAP00000026988	PPR	PF01535.20	2.7e-37	4	6
ENSCVAP00000026988	PPR	PF01535.20	2.7e-37	5	6
ENSCVAP00000026988	PPR	PF01535.20	2.7e-37	6	6

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000017590	-	4565	XM_015378212	ENSCVAP00000026988	1421 (aa)	XP_015233698	UPI00074288D9

Gene Model

Click here to download ENSCVAG00000012967's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000012967's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000012967	lrpprc	100	77.645	ENSAPOG00000016610	lrpprc	100	77.645	Acanthochromis_polyacanthus
ENSCVAG00000012967	lrpprc	96	51.453	ENSAMEG00000005852	LRPPRC	99	51.453	Ailuropoda_melanoleuca
ENSCVAG00000012967	lrpprc	100	74.332	ENSACIG00000009604	lrpprc	99	74.332	Amphilophus_citrinellus
ENSCVAG00000012967	lrpprc	100	78.741	ENSAOCG00000005886	lrpprc	100	78.741	Amphiprion_ocellaris
ENSCVAG00000012967	lrpprc	100	74.056	ENSAPEG00000002937	lrpprc	98	74.056	Amphiprion_percula
ENSCVAG00000012967	lrpprc	100	72.157	ENSATEG00000010555	lrpprc	100	72.157	Anabas_testudineus
ENSCVAG00000012967	lrpprc	94	56.541	ENSACAG00000029278	LRPPRC	99	55.165	Anolis_carolinensis
ENSCVAG00000012967	lrpprc	99	51.199	ENSANAG00000027440	LRPPRC	97	55.431	Aotus_nancymaae
ENSCVAG00000012967	lrpprc	96	73.057	ENSACLG00000023712	lrpprc	92	80.973	Astatotilapia_calliptera
ENSCVAG00000012967	lrpprc	99	50.669	ENSCJAG00000000794	LRPPRC	99	50.669	Callithrix_jacchus
ENSCVAG00000012967	lrpprc	97	51.334	ENSCHIG00000020173	LRPPRC	99	51.022	Capra_hircus
ENSCVAG00000012967	lrpprc	95	40.464	ENSCAPG00000013631	LRPPRC	99	40.464	Cavia_aperea
ENSCVAG00000012967	lrpprc	86	50.327	ENSCPOG00000000204	LRPPRC	100	50.327	Cavia_porcellus
ENSCVAG00000012967	lrpprc	99	51.410	ENSCCAG00000031900	LRPPRC	97	56.180	Cebus_capucinus
ENSCVAG00000012967	lrpprc	99	50.882	ENSCATG00000014187	LRPPRC	97	55.888	Cercocebus_atys
ENSCVAG00000012967	lrpprc	99	49.580	ENSCLAG00000005203	LRPPRC	99	49.510	Chinchilla_lanigera
ENSCVAG00000012967	lrpprc	99	50.812	ENSCSAG00000013233	LRPPRC	99	50.951	Chlorocebus_sabaeus
ENSCVAG00000012967	lrpprc	84	50.774	ENSCHOG00000003631	LRPPRC	84	50.774	Choloepus_hoffmanni
ENSCVAG00000012967	lrpprc	94	50.074	ENSCANG00000034961	LRPPRC	99	61.011	Colobus_angolensis_palliatus
ENSCVAG00000012967	lrpprc	99	50.494	ENSCGRG00001016261	Lrpprc	99	50.600	Cricetulus_griseus_chok1gshd
ENSCVAG00000012967	lrpprc	99	50.494	ENSCGRG00000004072	Lrpprc	99	50.600	Cricetulus_griseus_crigri
ENSCVAG00000012967	lrpprc	99	52.441	ENSCSEG00000003850	lrpprc	96	58.090	Cynoglossus_semilaevis
ENSCVAG00000012967	lrpprc	99	59.637	ENSDARG00000043970	lrpprc	98	59.637	Danio_rerio
ENSCVAG00000012967	lrpprc	77	42.081	ENSDNOG00000032336	-	95	42.081	Dasypus_novemcinctus
ENSCVAG00000012967	lrpprc	99	50.874	ENSDNOG00000012594	-	100	51.013	Dasypus_novemcinctus
ENSCVAG00000012967	lrpprc	98	51.351	ENSDORG00000012233	Lrpprc	99	51.278	Dipodomys_ordii
ENSCVAG00000012967	lrpprc	94	52.659	ENSETEG00000006657	LRPPRC	99	51.722	Echinops_telfairi
ENSCVAG00000012967	lrpprc	73	55.122	ENSEEUG00000012340	LRPPRC	81	55.122	Erinaceus_europaeus
ENSCVAG00000012967	lrpprc	95	60.264	ENSELUG00000012803	lrpprc	99	60.264	Esox_lucius
ENSCVAG00000012967	lrpprc	99	51.685	ENSFCAG00000013468	LRPPRC	99	51.961	Felis_catus
ENSCVAG00000012967	lrpprc	94	50.860	ENSFALG00000012738	LRPPRC	98	50.860	Ficedula_albicollis
ENSCVAG00000012967	lrpprc	99	49.119	ENSFDAG00000015328	LRPPRC	99	49.119	Fukomys_damarensis
ENSCVAG00000012967	lrpprc	100	85.785	ENSFHEG00000019604	lrpprc	100	85.785	Fundulus_heteroclitus
ENSCVAG00000012967	lrpprc	99	63.322	ENSGMOG00000008337	lrpprc	99	63.322	Gadus_morhua
ENSCVAG00000012967	lrpprc	99	83.864	ENSGAFG00000001455	lrpprc	99	83.864	Gambusia_affinis
ENSCVAG00000012967	lrpprc	99	72.261	ENSGACG00000010679	lrpprc	99	74.779	Gasterosteus_aculeatus
ENSCVAG00000012967	lrpprc	100	80.140	ENSHBUG00000000393	lrpprc	98	80.140	Haplochromis_burtoni
ENSCVAG00000012967	lrpprc	99	49.512	ENSHGLG00000006123	LRPPRC	100	49.512	Heterocephalus_glaber_female
ENSCVAG00000012967	lrpprc	59	49.061	ENSHGLG00100005960	-	100	49.061	Heterocephalus_glaber_male
ENSCVAG00000012967	lrpprc	97	71.902	ENSHCOG00000002107	lrpprc	100	71.902	Hippocampus_comes
ENSCVAG00000012967	lrpprc	99	63.350	ENSIPUG00000009406	lrpprc	98	63.350	Ictalurus_punctatus
ENSCVAG00000012967	lrpprc	95	51.468	ENSSTOG00000011185	LRPPRC	100	50.350	Ictidomys_tridecemlineatus
ENSCVAG00000012967	lrpprc	95	51.325	ENSJJAG00000020475	Lrpprc	99	50.423	Jaculus_jaculus
ENSCVAG00000012967	lrpprc	99	67.972	ENSKMAG00000003287	lrpprc	85	67.972	Kryptolebias_marmoratus
ENSCVAG00000012967	lrpprc	100	64.521	ENSLBEG00000023225	lrpprc	96	72.763	Labrus_bergylta
ENSCVAG00000012967	lrpprc	100	58.836	ENSLACG00000014030	LRPPRC	100	58.836	Latimeria_chalumnae
ENSCVAG00000012967	lrpprc	99	62.064	ENSLOCG00000016390	lrpprc	97	62.064	Lepisosteus_oculatus
ENSCVAG00000012967	lrpprc	99	49.372	ENSLAFG00000008614	LRPPRC	99	49.443	Loxodonta_africana
ENSCVAG00000012967	lrpprc	99	50.953	ENSMFAG00000041560	LRPPRC	99	58.703	Macaca_fascicularis
ENSCVAG00000012967	lrpprc	99	50.459	ENSMMUG00000019841	LRPPRC	99	58.703	Macaca_mulatta
ENSCVAG00000012967	lrpprc	99	50.953	ENSMNEG00000031613	LRPPRC	98	55.493	Macaca_nemestrina
ENSCVAG00000012967	lrpprc	98	65.522	ENSMAMG00000021835	lrpprc	98	65.507	Mastacembelus_armatus
ENSCVAG00000012967	lrpprc	100	80.070	ENSMZEG00005027379	lrpprc	99	80.070	Maylandia_zebra
ENSCVAG00000012967	lrpprc	99	50.421	ENSMAUG00000012118	Lrpprc	100	50.596	Mesocricetus_auratus
ENSCVAG00000012967	lrpprc	99	50.881	ENSMICG00000010486	LRPPRC	98	54.935	Microcebus_murinus
ENSCVAG00000012967	lrpprc	99	51.296	ENSMOCG00000006048	Lrpprc	100	51.296	Microtus_ochrogaster
ENSCVAG00000012967	lrpprc	100	68.825	ENSMMOG00000007830	lrpprc	94	77.059	Mola_mola
ENSCVAG00000012967	lrpprc	95	52.203	ENSMODG00000000648	LRPPRC	99	52.203	Monodelphis_domestica
ENSCVAG00000012967	lrpprc	100	70.667	ENSMALG00000001271	lrpprc	99	70.667	Monopterus_albus
ENSCVAG00000012967	lrpprc	99	51.304	ENSMPUG00000011800	LRPPRC	99	53.399	Mustela_putorius_furo
ENSCVAG00000012967	lrpprc	99	51.156	ENSMLUG00000010575	LRPPRC	99	51.617	Myotis_lucifugus
ENSCVAG00000012967	lrpprc	99	50.282	ENSNGAG00000013069	Lrpprc	100	50.282	Nannospalax_galili
ENSCVAG00000012967	lrpprc	94	71.791	ENSNBRG00000013202	lrpprc	92	79.915	Neolamprologus_brichardi
ENSCVAG00000012967	lrpprc	99	50.564	ENSNLEG00000016782	LRPPRC	97	56.530	Nomascus_leucogenys
ENSCVAG00000012967	lrpprc	88	56.250	ENSOPRG00000016774	LRPPRC	89	56.250	Ochotona_princeps
ENSCVAG00000012967	lrpprc	95	51.168	ENSODEG00000011211	LRPPRC	99	50.564	Octodon_degus
ENSCVAG00000012967	lrpprc	100	80.211	ENSONIG00000000917	lrpprc	99	78.788	Oreochromis_niloticus
ENSCVAG00000012967	lrpprc	74	48.784	ENSOANG00000014670	-	100	48.784	Ornithorhynchus_anatinus
ENSCVAG00000012967	lrpprc	99	51.575	ENSOCUG00000015046	LRPPRC	96	51.714	Oryctolagus_cuniculus
ENSCVAG00000012967	lrpprc	100	74.139	ENSORLG00000004605	lrpprc	99	71.533	Oryzias_latipes
ENSCVAG00000012967	lrpprc	91	78.709	ENSORLG00020012536	lrpprc	99	78.742	Oryzias_latipes_hni
ENSCVAG00000012967	lrpprc	100	72.632	ENSORLG00015018270	lrpprc	100	72.842	Oryzias_latipes_hsok
ENSCVAG00000012967	lrpprc	95	51.749	ENSOGAG00000012798	LRPPRC	99	51.443	Otolemur_garnettii
ENSCVAG00000012967	lrpprc	94	52.148	ENSOARG00000006522	LRPPRC	99	51.163	Ovis_aries
ENSCVAG00000012967	lrpprc	99	50.000	ENSPPAG00000040876	LRPPRC	98	55.618	Pan_paniscus
ENSCVAG00000012967	lrpprc	99	51.647	ENSPPRG00000006578	LRPPRC	99	51.888	Panthera_pardus
ENSCVAG00000012967	lrpprc	95	52.837	ENSPTIG00000000933	LRPPRC	96	52.837	Panthera_tigris_altaica
ENSCVAG00000012967	lrpprc	99	50.812	ENSPTRG00000011880	LRPPRC	98	55.680	Pan_troglodytes
ENSCVAG00000012967	lrpprc	99	50.670	ENSPANG00000020731	LRPPRC	97	55.701	Papio_anubis
ENSCVAG00000012967	lrpprc	95	48.613	ENSPKIG00000022232	lrpprc	97	60.659	Paramormyrops_kingsleyae
ENSCVAG00000012967	lrpprc	61	54.483	ENSPSIG00000006830	-	98	54.483	Pelodiscus_sinensis
ENSCVAG00000012967	lrpprc	66	64.430	ENSPMGG00000016597	lrpprc	96	64.430	Periophthalmus_magnuspinnatus
ENSCVAG00000012967	lrpprc	93	46.073	ENSPMAG00000002147	lrpprc	99	46.073	Petromyzon_marinus
ENSCVAG00000012967	lrpprc	99	81.883	ENSPFOG00000011227	lrpprc	99	81.883	Poecilia_formosa
ENSCVAG00000012967	lrpprc	99	81.883	ENSPLAG00000004018	lrpprc	99	81.883	Poecilia_latipinna
ENSCVAG00000012967	lrpprc	99	81.670	ENSPMEG00000016425	lrpprc	99	81.670	Poecilia_mexicana
ENSCVAG00000012967	lrpprc	99	81.286	ENSPREG00000003662	lrpprc	99	81.246	Poecilia_reticulata
ENSCVAG00000012967	lrpprc	57	47.896	ENSPPYG00000029532	-	99	47.896	Pongo_abelii
ENSCVAG00000012967	lrpprc	77	55.577	ENSPCAG00000001430	LRPPRC	84	52.453	Procavia_capensis
ENSCVAG00000012967	lrpprc	99	49.224	ENSPVAG00000002007	LRPPRC	99	49.506	Pteropus_vampyrus
ENSCVAG00000012967	lrpprc	100	70.272	ENSPNYG00000000756	lrpprc	100	70.272	Pundamilia_nyererei
ENSCVAG00000012967	lrpprc	99	65.919	ENSPNAG00000002895	lrpprc	99	65.919	Pygocentrus_nattereri
ENSCVAG00000012967	lrpprc	99	50.141	ENSRNOG00000005877	Lrpprc	99	50.388	Rattus_norvegicus
ENSCVAG00000012967	lrpprc	99	49.860	ENSRBIG00000031552	LRPPRC	99	50.000	Rhinopithecus_bieti
ENSCVAG00000012967	lrpprc	99	51.554	ENSSBOG00000011807	LRPPRC	97	56.203	Saimiri_boliviensis_boliviensis
ENSCVAG00000012967	lrpprc	94	51.486	ENSSHAG00000018725	LRPPRC	99	51.486	Sarcophilus_harrisii
ENSCVAG00000012967	lrpprc	100	56.582	ENSSFOG00015001042	lrpprc	99	56.582	Scleropages_formosus
ENSCVAG00000012967	lrpprc	100	74.157	ENSSDUG00000019062	lrpprc	99	74.157	Seriola_dumerili
ENSCVAG00000012967	lrpprc	100	58.922	ENSSLDG00000023028	lrpprc	100	61.582	Seriola_lalandi_dorsalis
ENSCVAG00000012967	lrpprc	86	48.616	ENSSARG00000000426	LRPPRC	99	48.616	Sorex_araneus
ENSCVAG00000012967	lrpprc	100	67.059	ENSSPAG00000000162	lrpprc	100	67.614	Stegastes_partitus
ENSCVAG00000012967	lrpprc	99	51.296	ENSSSCG00000008452	LRPPRC	99	51.296	Sus_scrofa
ENSCVAG00000012967	lrpprc	93	48.947	ENSTGUG00000003759	LRPPRC	99	48.947	Taeniopygia_guttata
ENSCVAG00000012967	lrpprc	99	70.988	ENSTRUG00000008409	lrpprc	96	70.988	Takifugu_rubripes
ENSCVAG00000012967	lrpprc	99	68.847	ENSTNIG00000007470	lrpprc	100	70.162	Tetraodon_nigroviridis
ENSCVAG00000012967	lrpprc	99	49.684	ENSTTRG00000006403	LRPPRC	99	49.755	Tursiops_truncatus
ENSCVAG00000012967	lrpprc	94	49.407	ENSVPAG00000008993	LRPPRC	99	49.407	Vicugna_pacos
ENSCVAG00000012967	lrpprc	94	58.544	ENSXETG00000009296	lrpprc	96	58.915	Xenopus_tropicalis
ENSCVAG00000012967	lrpprc	99	75.960	ENSXCOG00000013343	lrpprc	95	78.669	Xiphophorus_couchianus
ENSCVAG00000012967	lrpprc	99	83.652	ENSXMAG00000018108	lrpprc	99	83.652	Xiphophorus_maculatus