EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000013016 (Gene tree)
Gene ID: 107089180
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 29744 bases
Position: chrKL652742.1:885247-914990
Accession: 107089180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000027024	Nucleoplasmin	PF03066.15	1.1e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000029708	-	3413	XM_015381821	ENSCVAP00000027024	297 (aa)	XP_015237307	UPI000742583B

Gene Model

Click here to download ENSCVAG00000013016's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000013016's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000013016	npm1b	53	30.000	ENSCVAG00000003305	npm3	87	38.621
ENSCVAG00000013016	npm1b	96	40.000	ENSCVAG00000008960	npm1a	97	41.967

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000013016	npm1b	100	77.926	ENSAPOG00000004268	npm1b	100	78.930	Acanthochromis_polyacanthus
ENSCVAG00000013016	npm1b	100	76.923	ENSAOCG00000012549	npm1b	100	76.589	Amphiprion_ocellaris
ENSCVAG00000013016	npm1b	100	76.923	ENSAPEG00000000868	npm1b	100	75.585	Amphiprion_percula
ENSCVAG00000013016	npm1b	100	78.595	ENSATEG00000006254	npm1b	100	78.595	Anabas_testudineus
ENSCVAG00000013016	npm1b	98	42.722	ENSACAG00000015626	-	100	43.750	Anolis_carolinensis
ENSCVAG00000013016	npm1b	50	82.550	ENSACLG00000013812	npm1b	71	81.457	Astatotilapia_calliptera
ENSCVAG00000013016	npm1b	98	60.066	ENSAMXG00000042148	npm1b	99	60.726	Astyanax_mexicanus
ENSCVAG00000013016	npm1b	77	32.083	ENSCAFG00000023359	-	68	34.659	Canis_familiaris
ENSCVAG00000013016	npm1b	98	44.728	ENSCPBG00000021221	-	60	46.602	Chrysemys_picta_bellii
ENSCVAG00000013016	npm1b	100	73.000	ENSCSEG00000004530	npm1b	100	71.333	Cynoglossus_semilaevis
ENSCVAG00000013016	npm1b	99	62.583	ENSDARG00000037675	npm1b	99	62.914	Danio_rerio
ENSCVAG00000013016	npm1b	99	62.829	ENSELUG00000022123	npm1b	99	62.829	Esox_lucius
ENSCVAG00000013016	npm1b	94	41.958	ENSFALG00000003320	-	94	42.361	Ficedula_albicollis
ENSCVAG00000013016	npm1b	100	89.632	ENSFHEG00000020794	npm1b	100	89.632	Fundulus_heteroclitus
ENSCVAG00000013016	npm1b	98	61.017	ENSGMOG00000002689	npm1b	100	62.373	Gadus_morhua
ENSCVAG00000013016	npm1b	98	42.157	ENSGALG00000002197	-	73	43.137	Gallus_gallus
ENSCVAG00000013016	npm1b	100	88.552	ENSGAFG00000017709	npm1b	100	88.552	Gambusia_affinis
ENSCVAG00000013016	npm1b	98	73.469	ENSGACG00000016706	npm1b	100	73.469	Gasterosteus_aculeatus
ENSCVAG00000013016	npm1b	98	43.548	ENSGAGG00000020250	-	100	44.839	Gopherus_agassizii
ENSCVAG00000013016	npm1b	100	78.930	ENSHBUG00000019903	npm1b	95	78.930	Haplochromis_burtoni
ENSCVAG00000013016	npm1b	100	70.333	ENSHCOG00000003895	npm1b	100	69.333	Hippocampus_comes
ENSCVAG00000013016	npm1b	99	56.478	ENSIPUG00000020165	npm1b	99	57.143	Ictalurus_punctatus
ENSCVAG00000013016	npm1b	99	82.034	ENSKMAG00000008260	npm1b	99	83.729	Kryptolebias_marmoratus
ENSCVAG00000013016	npm1b	92	41.356	ENSLACG00000001779	-	100	42.215	Latimeria_chalumnae
ENSCVAG00000013016	npm1b	98	36.700	ENSLACG00000013460	-	100	36.789	Latimeria_chalumnae
ENSCVAG00000013016	npm1b	94	44.710	ENSLOCG00000001942	npm1b	100	46.075	Lepisosteus_oculatus
ENSCVAG00000013016	npm1b	72	73.516	ENSMAMG00000015335	npm1b	100	73.516	Mastacembelus_armatus
ENSCVAG00000013016	npm1b	93	42.456	ENSMGAG00000001591	-	100	43.509	Meleagris_gallopavo
ENSCVAG00000013016	npm1b	81	72.016	ENSMALG00000015383	npm1b	100	73.663	Monopterus_albus
ENSCVAG00000013016	npm1b	50	83.221	ENSNBRG00000014133	npm1b	82	82.119	Neolamprologus_brichardi
ENSCVAG00000013016	npm1b	99	69.360	ENSONIG00000001397	npm1b	98	69.381	Oreochromis_niloticus
ENSCVAG00000013016	npm1b	100	64.983	ENSOMEG00000003414	npm1b	100	64.646	Oryzias_melastigma
ENSCVAG00000013016	npm1b	99	57.282	ENSPKIG00000020050	npm1b	99	57.605	Paramormyrops_kingsleyae
ENSCVAG00000013016	npm1b	96	45.302	ENSPSIG00000011204	-	92	45.918	Pelodiscus_sinensis
ENSCVAG00000013016	npm1b	88	34.328	ENSPMAG00000004930	npm1b	99	34.386	Petromyzon_marinus
ENSCVAG00000013016	npm1b	100	90.236	ENSPFOG00000018357	npm1b	100	90.236	Poecilia_formosa
ENSCVAG00000013016	npm1b	50	82.550	ENSPNYG00000001427	npm1b	71	81.457	Pundamilia_nyererei
ENSCVAG00000013016	npm1b	98	58.863	ENSPNAG00000005498	npm1b	99	59.532	Pygocentrus_nattereri
ENSCVAG00000013016	npm1b	99	56.856	ENSSFOG00015005064	npm1b	100	55.667	Scleropages_formosus
ENSCVAG00000013016	npm1b	100	72.483	ENSSMAG00000008088	npm1b	100	71.812	Scophthalmus_maximus
ENSCVAG00000013016	npm1b	100	79.264	ENSSDUG00000007726	npm1b	100	77.258	Seriola_dumerili
ENSCVAG00000013016	npm1b	100	79.599	ENSSLDG00000021396	npm1b	100	77.592	Seriola_lalandi_dorsalis
ENSCVAG00000013016	npm1b	50	49.057	ENSSPUG00000017271	-	73	50.676	Sphenodon_punctatus
ENSCVAG00000013016	npm1b	100	77.258	ENSSPAG00000011152	npm1b	100	78.930	Stegastes_partitus
ENSCVAG00000013016	npm1b	93	42.361	ENSTGUG00000014970	-	100	41.667	Taeniopygia_guttata
ENSCVAG00000013016	npm1b	100	72.757	ENSTRUG00000008105	npm1b	95	71.429	Takifugu_rubripes
ENSCVAG00000013016	npm1b	99	69.435	ENSTNIG00000013057	npm1b	100	69.435	Tetraodon_nigroviridis
ENSCVAG00000013016	npm1b	99	40.810	ENSXETG00000008403	npm1	100	39.498	Xenopus_tropicalis
ENSCVAG00000013016	npm1b	100	91.919	ENSXMAG00000001986	npm1b	100	91.919	Xiphophorus_maculatus