EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000013089 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 19049 bases
Position: chrKL653654.1:60743-79791
Accession: 107101793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000010845	XRN_N	PF03159.18	4.5e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000017668	-	3276	XM_015400844	ENSCVAP00000010845	1091 (aa)	XP_015256330	-

Gene Model

Click here to download ENSCVAG00000013089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000013089's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000013089	xrn1	99	71.605	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSCVAG00000013089	xrn1	99	88.267	ENSAPOG00000000622	xrn1	94	81.953	Acanthochromis_polyacanthus
ENSCVAG00000013089	xrn1	99	72.208	ENSAMEG00000012538	XRN1	66	71.944	Ailuropoda_melanoleuca
ENSCVAG00000013089	xrn1	99	86.360	ENSACIG00000001057	xrn1	70	86.360	Amphilophus_citrinellus
ENSCVAG00000013089	xrn1	99	87.633	ENSAOCG00000014097	xrn1	95	82.906	Amphiprion_ocellaris
ENSCVAG00000013089	xrn1	99	87.245	ENSAPEG00000006620	xrn1	72	87.245	Amphiprion_percula
ENSCVAG00000013089	xrn1	99	82.935	ENSATEG00000009752	xrn1	72	82.935	Anabas_testudineus
ENSCVAG00000013089	xrn1	97	72.604	ENSAPLG00000004905	XRN1	64	72.514	Anas_platyrhynchos
ENSCVAG00000013089	xrn1	99	72.085	ENSACAG00000004985	XRN1	64	72.085	Anolis_carolinensis
ENSCVAG00000013089	xrn1	99	72.615	ENSANAG00000029013	XRN1	99	68.486	Aotus_nancymaae
ENSCVAG00000013089	xrn1	99	85.689	ENSACLG00000004806	xrn1	66	85.247	Astatotilapia_calliptera
ENSCVAG00000013089	xrn1	99	77.019	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSCVAG00000013089	xrn1	99	72.222	ENSBTAG00000011524	XRN1	66	72.487	Bos_taurus
ENSCVAG00000013089	xrn1	97	62.198	WBGene00012730	xrn-1	68	62.198	Caenorhabditis_elegans
ENSCVAG00000013089	xrn1	99	71.982	ENSCJAG00000001872	XRN1	69	71.982	Callithrix_jacchus
ENSCVAG00000013089	xrn1	99	73.121	ENSCAFG00000007783	XRN1	66	73.121	Canis_familiaris
ENSCVAG00000013089	xrn1	99	72.840	ENSCAFG00020009120	XRN1	99	74.209	Canis_lupus_dingo
ENSCVAG00000013089	xrn1	99	72.222	ENSCHIG00000019192	XRN1	66	71.958	Capra_hircus
ENSCVAG00000013089	xrn1	99	72.222	ENSTSYG00000002705	XRN1	67	67.750	Carlito_syrichta
ENSCVAG00000013089	xrn1	83	60.099	ENSCAPG00000004604	-	99	61.313	Cavia_aperea
ENSCVAG00000013089	xrn1	99	72.070	ENSCCAG00000034800	XRN1	99	76.312	Cebus_capucinus
ENSCVAG00000013089	xrn1	99	71.958	ENSCATG00000041794	XRN1	67	67.544	Cercocebus_atys
ENSCVAG00000013089	xrn1	99	72.095	ENSCLAG00000001451	XRN1	99	76.630	Chinchilla_lanigera
ENSCVAG00000013089	xrn1	99	71.958	ENSCSAG00000011265	XRN1	66	67.544	Chlorocebus_sabaeus
ENSCVAG00000013089	xrn1	96	51.434	ENSCSAVG00000008584	-	86	51.025	Ciona_savignyi
ENSCVAG00000013089	xrn1	99	71.958	ENSCANG00000037495	XRN1	99	76.153	Colobus_angolensis_palliatus
ENSCVAG00000013089	xrn1	99	71.781	ENSCGRG00001019411	Xrn1	99	68.189	Cricetulus_griseus_chok1gshd
ENSCVAG00000013089	xrn1	99	71.781	ENSCGRG00000012464	Xrn1	99	68.189	Cricetulus_griseus_crigri
ENSCVAG00000013089	xrn1	98	81.605	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSCVAG00000013089	xrn1	99	79.682	ENSDARG00000091652	xrn1	98	78.224	Danio_rerio
ENSCVAG00000013089	xrn1	99	72.134	ENSDORG00000013833	Xrn1	66	67.719	Dipodomys_ordii
ENSCVAG00000013089	xrn1	99	42.263	FBgn0020261	pcm	67	42.427	Drosophila_melanogaster
ENSCVAG00000013089	xrn1	77	69.369	ENSETEG00000003978	XRN1	54	70.248	Echinops_telfairi
ENSCVAG00000013089	xrn1	99	75.206	ENSEASG00005002687	XRN1	99	76.630	Equus_asinus_asinus
ENSCVAG00000013089	xrn1	99	72.222	ENSECAG00000008301	XRN1	66	69.069	Equus_caballus
ENSCVAG00000013089	xrn1	75	79.086	ENSEEUG00000011323	XRN1	51	79.613	Erinaceus_europaeus
ENSCVAG00000013089	xrn1	99	79.769	ENSELUG00000000169	xrn1	66	80.213	Esox_lucius
ENSCVAG00000013089	xrn1	99	66.960	ENSFCAG00000027589	XRN1	81	87.634	Felis_catus
ENSCVAG00000013089	xrn1	99	72.374	ENSFALG00000007021	XRN1	64	72.551	Ficedula_albicollis
ENSCVAG00000013089	xrn1	99	71.919	ENSFDAG00000020494	XRN1	99	76.312	Fukomys_damarensis
ENSCVAG00000013089	xrn1	99	79.476	ENSGMOG00000006396	xrn1	66	79.476	Gadus_morhua
ENSCVAG00000013089	xrn1	99	72.198	ENSGALG00000002706	XRN1	64	72.021	Gallus_gallus
ENSCVAG00000013089	xrn1	99	85.234	ENSGACG00000014328	xrn1	66	85.234	Gasterosteus_aculeatus
ENSCVAG00000013089	xrn1	99	72.487	ENSGAGG00000017535	XRN1	68	67.750	Gopherus_agassizii
ENSCVAG00000013089	xrn1	99	71.781	ENSGGOG00000008047	XRN1	67	67.456	Gorilla_gorilla
ENSCVAG00000013089	xrn1	99	84.411	ENSHBUG00000005908	xrn1	69	84.187	Haplochromis_burtoni
ENSCVAG00000013089	xrn1	99	72.359	ENSHGLG00000014476	XRN1	99	76.471	Heterocephalus_glaber_female
ENSCVAG00000013089	xrn1	99	72.359	ENSHGLG00100015130	XRN1	99	76.471	Heterocephalus_glaber_male
ENSCVAG00000013089	xrn1	99	82.570	ENSHCOG00000014062	xrn1	71	79.225	Hippocampus_comes
ENSCVAG00000013089	xrn1	99	78.269	ENSIPUG00000015229	xrn1	68	75.972	Ictalurus_punctatus
ENSCVAG00000013089	xrn1	99	72.487	ENSSTOG00000013552	XRN1	99	76.312	Ictidomys_tridecemlineatus
ENSCVAG00000013089	xrn1	97	71.661	ENSJJAG00000010863	Xrn1	99	68.072	Jaculus_jaculus
ENSCVAG00000013089	xrn1	99	86.438	ENSKMAG00000021356	xrn1	95	84.731	Kryptolebias_marmoratus
ENSCVAG00000013089	xrn1	99	85.394	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSCVAG00000013089	xrn1	99	72.944	ENSLACG00000009020	XRN1	65	72.856	Latimeria_chalumnae
ENSCVAG00000013089	xrn1	99	76.821	ENSLOCG00000007944	xrn1	66	76.998	Lepisosteus_oculatus
ENSCVAG00000013089	xrn1	92	72.091	ENSLAFG00000015426	XRN1	99	68.563	Loxodonta_africana
ENSCVAG00000013089	xrn1	99	71.958	ENSMFAG00000032599	XRN1	67	67.663	Macaca_fascicularis
ENSCVAG00000013089	xrn1	99	71.958	ENSMMUG00000014038	XRN1	67	67.544	Macaca_mulatta
ENSCVAG00000013089	xrn1	99	71.869	ENSMNEG00000034217	XRN1	67	68.805	Macaca_nemestrina
ENSCVAG00000013089	xrn1	99	85.867	ENSMAMG00000013219	xrn1	92	84.914	Mastacembelus_armatus
ENSCVAG00000013089	xrn1	99	85.777	ENSMZEG00005015099	xrn1	66	82.420	Maylandia_zebra
ENSCVAG00000013089	xrn1	97	70.108	ENSMGAG00000006333	XRN1	65	69.928	Meleagris_gallopavo
ENSCVAG00000013089	xrn1	99	72.575	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSCVAG00000013089	xrn1	85	76.312	ENSMOCG00000008665	Xrn1	99	71.065	Microtus_ochrogaster
ENSCVAG00000013089	xrn1	99	73.080	ENSMODG00000021236	XRN1	66	73.433	Monodelphis_domestica
ENSCVAG00000013089	xrn1	99	84.804	ENSMALG00000004098	xrn1	67	84.713	Monopterus_albus
ENSCVAG00000013089	xrn1	92	76.837	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSCVAG00000013089	xrn1	99	71.869	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSCVAG00000013089	xrn1	99	72.198	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSCVAG00000013089	xrn1	99	71.869	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSCVAG00000013089	xrn1	99	72.992	ENSMPUG00000012040	XRN1	66	68.130	Mustela_putorius_furo
ENSCVAG00000013089	xrn1	99	72.046	ENSMLUG00000016885	XRN1	66	71.781	Myotis_lucifugus
ENSCVAG00000013089	xrn1	85	73.089	ENSNGAG00000023964	Xrn1	99	73.408	Nannospalax_galili
ENSCVAG00000013089	xrn1	99	71.693	ENSNLEG00000004726	XRN1	67	67.281	Nomascus_leucogenys
ENSCVAG00000013089	xrn1	99	86.561	ENSONIG00000016673	xrn1	75	86.561	Oreochromis_niloticus
ENSCVAG00000013089	xrn1	87	69.439	ENSOANG00000006735	XRN1	63	68.136	Ornithorhynchus_anatinus
ENSCVAG00000013089	xrn1	99	72.792	ENSOCUG00000001861	XRN1	65	68.102	Oryctolagus_cuniculus
ENSCVAG00000013089	xrn1	99	85.500	ENSORLG00000013005	xrn1	68	83.024	Oryzias_latipes
ENSCVAG00000013089	xrn1	99	86.007	ENSORLG00020005559	xrn1	69	86.007	Oryzias_latipes_hni
ENSCVAG00000013089	xrn1	99	85.829	ENSORLG00015022523	xrn1	71	85.829	Oryzias_latipes_hsok
ENSCVAG00000013089	xrn1	99	86.360	ENSOMEG00000015397	xrn1	72	86.182	Oryzias_melastigma
ENSCVAG00000013089	xrn1	99	70.070	ENSOGAG00000000170	XRN1	66	66.696	Otolemur_garnettii
ENSCVAG00000013089	xrn1	99	72.310	ENSOARG00000006343	XRN1	67	72.046	Ovis_aries
ENSCVAG00000013089	xrn1	99	71.693	ENSPPAG00000010180	XRN1	67	67.368	Pan_paniscus
ENSCVAG00000013089	xrn1	99	72.511	ENSPPRG00000007125	XRN1	67	69.244	Panthera_pardus
ENSCVAG00000013089	xrn1	99	72.599	ENSPTIG00000021081	XRN1	67	69.244	Panthera_tigris_altaica
ENSCVAG00000013089	xrn1	99	71.693	ENSPTRG00000015482	XRN1	67	67.368	Pan_troglodytes
ENSCVAG00000013089	xrn1	99	71.958	ENSPANG00000010638	XRN1	67	67.544	Papio_anubis
ENSCVAG00000013089	xrn1	99	72.408	ENSPSIG00000018050	XRN1	65	68.624	Pelodiscus_sinensis
ENSCVAG00000013089	xrn1	85	84.566	ENSPMGG00000002648	xrn1	99	85.370	Periophthalmus_magnuspinnatus
ENSCVAG00000013089	xrn1	85	76.312	ENSPEMG00000020610	Xrn1	99	76.312	Peromyscus_maniculatus_bairdii
ENSCVAG00000013089	xrn1	96	76.724	ENSPMAG00000002975	xrn1	90	76.724	Petromyzon_marinus
ENSCVAG00000013089	xrn1	99	74.121	ENSPCIG00000028735	XRN1	99	77.548	Phascolarctos_cinereus
ENSCVAG00000013089	xrn1	99	89.613	ENSPFOG00000013932	xrn1	73	88.996	Poecilia_formosa
ENSCVAG00000013089	xrn1	99	90.009	ENSPLAG00000021653	xrn1	73	86.649	Poecilia_latipinna
ENSCVAG00000013089	xrn1	99	89.418	ENSPMEG00000003076	xrn1	72	86.067	Poecilia_mexicana
ENSCVAG00000013089	xrn1	99	88.987	ENSPREG00000021147	xrn1	69	88.455	Poecilia_reticulata
ENSCVAG00000013089	xrn1	99	71.781	ENSPPYG00000014172	XRN1	66	67.368	Pongo_abelii
ENSCVAG00000013089	xrn1	97	68.773	ENSPCAG00000005638	XRN1	72	65.049	Procavia_capensis
ENSCVAG00000013089	xrn1	99	71.869	ENSPCOG00000013089	XRN1	99	75.994	Propithecus_coquereli
ENSCVAG00000013089	xrn1	99	69.462	ENSPVAG00000016265	XRN1	61	85.838	Pteropus_vampyrus
ENSCVAG00000013089	xrn1	99	85.841	ENSPNYG00000010570	xrn1	68	85.752	Pundamilia_nyererei
ENSCVAG00000013089	xrn1	99	75.419	ENSPNAG00000023531	xrn1	68	74.273	Pygocentrus_nattereri
ENSCVAG00000013089	xrn1	99	71.869	ENSRNOG00000042951	Xrn1	66	70.547	Rattus_norvegicus
ENSCVAG00000013089	xrn1	99	71.781	ENSRBIG00000041227	XRN1	67	67.368	Rhinopithecus_bieti
ENSCVAG00000013089	xrn1	98	52.446	YGL173C	XRN1	69	52.446	Saccharomyces_cerevisiae
ENSCVAG00000013089	xrn1	99	72.247	ENSSBOG00000029561	XRN1	67	67.835	Saimiri_boliviensis_boliviensis
ENSCVAG00000013089	xrn1	97	72.383	ENSSHAG00000016207	XRN1	66	67.745	Sarcophilus_harrisii
ENSCVAG00000013089	xrn1	99	78.330	ENSSFOG00015024211	xrn1	69	78.242	Scleropages_formosus
ENSCVAG00000013089	xrn1	99	85.247	ENSSMAG00000016534	xrn1	71	82.155	Scophthalmus_maximus
ENSCVAG00000013089	xrn1	99	86.679	ENSSDUG00000010306	xrn1	72	85.080	Seriola_dumerili
ENSCVAG00000013089	xrn1	99	86.295	ENSSLDG00000021543	xrn1	71	84.704	Seriola_lalandi_dorsalis
ENSCVAG00000013089	xrn1	84	67.183	ENSSARG00000007741	-	71	67.079	Sorex_araneus
ENSCVAG00000013089	xrn1	99	72.551	ENSTGUG00000008498	XRN1	66	72.727	Taeniopygia_guttata
ENSCVAG00000013089	xrn1	99	84.553	ENSTRUG00000004895	xrn1	97	84.848	Takifugu_rubripes
ENSCVAG00000013089	xrn1	99	80.936	ENSTNIG00000017615	xrn1	68	80.936	Tetraodon_nigroviridis
ENSCVAG00000013089	xrn1	89	85.753	ENSTBEG00000003256	XRN1	59	85.753	Tupaia_belangeri
ENSCVAG00000013089	xrn1	99	69.753	ENSTTRG00000012914	XRN1	66	69.489	Tursiops_truncatus
ENSCVAG00000013089	xrn1	99	71.531	ENSUAMG00000001608	XRN1	99	72.973	Ursus_americanus
ENSCVAG00000013089	xrn1	99	72.575	ENSUMAG00000013625	XRN1	66	67.368	Ursus_maritimus
ENSCVAG00000013089	xrn1	99	69.346	ENSVPAG00000004690	XRN1	66	65.817	Vicugna_pacos
ENSCVAG00000013089	xrn1	99	74.281	ENSVVUG00000024461	XRN1	99	77.039	Vulpes_vulpes
ENSCVAG00000013089	xrn1	99	71.668	ENSXETG00000000619	xrn1	97	86.290	Xenopus_tropicalis
ENSCVAG00000013089	xrn1	99	91.780	ENSXCOG00000007917	xrn1	68	91.780	Xiphophorus_couchianus
ENSCVAG00000013089	xrn1	99	92.105	ENSXMAG00000018320	xrn1	71	92.015	Xiphophorus_maculatus