EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000013446 (Gene tree)
Gene ID: 107088102
Gene Symbol: -
Alias: -
Full Name: replication protein A 70 kDa DNA-binding subunit-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 39763 bases
Position: chrKL652707.1:1082824-1122586
Accession: 107088102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000011210	tRNA_anti-codon	PF01336.25	1.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000029846	-	2084	XM_015380048	ENSCVAP00000011210	670 (aa)	XP_015235534	-

Gene Model

Click here to download ENSCVAG00000013446's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000013446's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000013446	-	79	68.735	ENSCVAG00000019431	rpa1	89	69.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000013446	-	96	58.009	ENSAPOG00000011658	rpa1	88	71.014	Acanthochromis_polyacanthus
ENSCVAG00000013446	-	96	75.262	ENSAPOG00000019409	RPA1	97	74.627	Acanthochromis_polyacanthus
ENSCVAG00000013446	-	93	54.299	ENSAMEG00000007706	RPA1	92	54.299	Ailuropoda_melanoleuca
ENSCVAG00000013446	-	92	73.430	ENSACIG00000012881	RPA1	96	73.430	Amphilophus_citrinellus
ENSCVAG00000013446	-	82	57.117	ENSACIG00000007277	rpa1	86	57.117	Amphilophus_citrinellus
ENSCVAG00000013446	-	86	71.256	ENSAOCG00000023376	rpa1	95	71.256	Amphiprion_ocellaris
ENSCVAG00000013446	-	96	74.462	ENSAOCG00000009003	RPA1	96	74.462	Amphiprion_ocellaris
ENSCVAG00000013446	-	96	58.631	ENSAPEG00000008634	rpa1	88	71.739	Amphiprion_percula
ENSCVAG00000013446	-	96	76.462	ENSAPEG00000019132	RPA1	96	76.462	Amphiprion_percula
ENSCVAG00000013446	-	96	73.538	ENSATEG00000006443	RPA1	96	73.538	Anabas_testudineus
ENSCVAG00000013446	-	76	70.743	ENSATEG00000022024	rpa1	89	70.743	Anabas_testudineus
ENSCVAG00000013446	-	93	46.373	ENSAPLG00000012442	RPA1	95	46.373	Anas_platyrhynchos
ENSCVAG00000013446	-	81	57.208	ENSACAG00000014490	RPA1	93	57.208	Anolis_carolinensis
ENSCVAG00000013446	-	93	58.811	ENSANAG00000023456	RPA1	94	58.811	Aotus_nancymaae
ENSCVAG00000013446	-	74	71.981	ENSACLG00000006640	rpa1	89	71.981	Astatotilapia_calliptera
ENSCVAG00000013446	-	96	73.220	ENSACLG00000005223	RPA1	96	73.220	Astatotilapia_calliptera
ENSCVAG00000013446	-	92	69.091	ENSAMXG00000008418	rpa1	93	71.429	Astyanax_mexicanus
ENSCVAG00000013446	-	96	53.023	ENSBTAG00000009711	RPA1	95	52.941	Bos_taurus
ENSCVAG00000013446	-	96	53.005	ENSCJAG00000001848	RPA1	96	53.303	Callithrix_jacchus
ENSCVAG00000013446	-	96	54.264	ENSCAFG00000019249	RPA1	95	54.419	Canis_familiaris
ENSCVAG00000013446	-	96	54.264	ENSCAFG00020009847	RPA1	95	54.419	Canis_lupus_dingo
ENSCVAG00000013446	-	96	52.477	ENSCHIG00000026308	RPA1	95	53.406	Capra_hircus
ENSCVAG00000013446	-	96	52.842	ENSTSYG00000003482	-	96	52.842	Carlito_syrichta
ENSCVAG00000013446	-	96	52.842	ENSCPOG00000000035	RPA1	96	52.842	Cavia_porcellus
ENSCVAG00000013446	-	96	44.992	ENSCCAG00000010981	RPA1	96	45.315	Cebus_capucinus
ENSCVAG00000013446	-	96	50.154	ENSCLAG00000015045	-	96	50.154	Chinchilla_lanigera
ENSCVAG00000013446	-	96	53.610	ENSCLAG00000005185	-	96	53.610	Chinchilla_lanigera
ENSCVAG00000013446	-	96	44.530	ENSCSAG00000013833	RPA1	96	45.077	Chlorocebus_sabaeus
ENSCVAG00000013446	-	59	66.250	ENSCHOG00000009454	-	95	65.060	Choloepus_hoffmanni
ENSCVAG00000013446	-	93	52.782	ENSCHOG00000013540	-	97	52.782	Choloepus_hoffmanni
ENSCVAG00000013446	-	96	52.160	ENSCPBG00000020377	RPA1	95	53.477	Chrysemys_picta_bellii
ENSCVAG00000013446	-	87	48.780	ENSCING00000023482	-	95	48.780	Ciona_intestinalis
ENSCVAG00000013446	-	87	65.037	ENSCANG00000030911	RPA1	95	65.037	Colobus_angolensis_palliatus
ENSCVAG00000013446	-	96	53.333	ENSCGRG00001008197	Rpa1	96	53.488	Cricetulus_griseus_chok1gshd
ENSCVAG00000013446	-	61	64.792	ENSCGRG00000000582	Rpa1	80	64.792	Cricetulus_griseus_crigri
ENSCVAG00000013446	-	96	63.101	ENSCSEG00000012726	RPA1	95	64.618	Cynoglossus_semilaevis
ENSCVAG00000013446	-	96	56.522	ENSCSEG00000013066	rpa1	87	67.866	Cynoglossus_semilaevis
ENSCVAG00000013446	-	96	57.430	ENSDARG00000003938	rpa1	96	57.342	Danio_rerio
ENSCVAG00000013446	-	92	55.016	ENSDNOG00000017218	RPA1	91	55.016	Dasypus_novemcinctus
ENSCVAG00000013446	-	96	54.391	ENSDORG00000006199	Rpa1	96	54.391	Dipodomys_ordii
ENSCVAG00000013446	-	81	44.125	FBgn0010173	RpA-70	93	44.844	Drosophila_melanogaster
ENSCVAG00000013446	-	81	56.250	ENSETEG00000017608	RPA1	80	56.250	Echinops_telfairi
ENSCVAG00000013446	-	87	64.423	ENSEASG00005009372	RPA1	95	64.423	Equus_asinus_asinus
ENSCVAG00000013446	-	96	53.488	ENSECAG00000023886	RPA1	95	53.488	Equus_caballus
ENSCVAG00000013446	-	57	65.803	ENSEEUG00000002186	-	63	65.803	Erinaceus_europaeus
ENSCVAG00000013446	-	96	57.032	ENSELUG00000021071	rpa1	96	57.187	Esox_lucius
ENSCVAG00000013446	-	66	71.827	ENSELUG00000006136	RPA1	95	71.827	Esox_lucius
ENSCVAG00000013446	-	96	54.264	ENSFCAG00000006306	RPA1	95	54.264	Felis_catus
ENSCVAG00000013446	-	95	51.482	ENSFALG00000006575	RPA1	94	51.482	Ficedula_albicollis
ENSCVAG00000013446	-	96	54.141	ENSFDAG00000007720	RPA1	96	54.141	Fukomys_damarensis
ENSCVAG00000013446	-	96	55.901	ENSFHEG00000003580	rpa1	95	56.086	Fundulus_heteroclitus
ENSCVAG00000013446	-	79	69.544	ENSGMOG00000010382	rpa1	93	69.544	Gadus_morhua
ENSCVAG00000013446	-	95	51.562	ENSGALG00000003072	RPA1	94	51.562	Gallus_gallus
ENSCVAG00000013446	-	86	69.492	ENSGAFG00000012916	rpa1	95	69.492	Gambusia_affinis
ENSCVAG00000013446	-	96	82.016	ENSGAFG00000020953	RPA1	96	82.016	Gambusia_affinis
ENSCVAG00000013446	-	96	54.899	ENSGACG00000010856	rpa1	90	70.270	Gasterosteus_aculeatus
ENSCVAG00000013446	-	96	51.156	ENSGAGG00000013611	RPA1	96	51.156	Gopherus_agassizii
ENSCVAG00000013446	-	89	65.037	ENSGGOG00000014186	RPA1	96	65.037	Gorilla_gorilla
ENSCVAG00000013446	-	92	68.018	ENSHBUG00000009348	RPA1	94	68.018	Haplochromis_burtoni
ENSCVAG00000013446	-	96	58.631	ENSHBUG00000017773	rpa1	86	71.739	Haplochromis_burtoni
ENSCVAG00000013446	-	96	53.621	ENSHGLG00000008846	RPA1	96	53.621	Heterocephalus_glaber_female
ENSCVAG00000013446	-	95	50.078	ENSHGLG00100000799	-	94	50.078	Heterocephalus_glaber_male
ENSCVAG00000013446	-	93	48.013	ENSHGLG00100002005	-	96	48.490	Heterocephalus_glaber_male
ENSCVAG00000013446	-	96	53.621	ENSHGLG00100017755	-	96	53.621	Heterocephalus_glaber_male
ENSCVAG00000013446	-	88	51.270	ENSHCOG00000000351	RPA1	95	50.455	Hippocampus_comes
ENSCVAG00000013446	-	80	63.789	ENSHCOG00000001401	rpa1	96	52.859	Hippocampus_comes
ENSCVAG00000013446	-	96	58.204	ENSIPUG00000004400	rpa1	96	58.204	Ictalurus_punctatus
ENSCVAG00000013446	-	89	53.577	ENSSTOG00000022475	RPA1	91	53.577	Ictidomys_tridecemlineatus
ENSCVAG00000013446	-	93	54.575	ENSJJAG00000000876	Rpa1	94	54.575	Jaculus_jaculus
ENSCVAG00000013446	-	96	71.252	ENSKMAG00000000234	RPA1	96	71.252	Kryptolebias_marmoratus
ENSCVAG00000013446	-	96	56.502	ENSKMAG00000005605	rpa1	96	55.814	Kryptolebias_marmoratus
ENSCVAG00000013446	-	83	69.438	ENSLBEG00000021604	rpa1	94	69.438	Labrus_bergylta
ENSCVAG00000013446	-	95	69.585	ENSLBEG00000002281	RPA1	93	72.000	Labrus_bergylta
ENSCVAG00000013446	-	67	56.739	ENSLACG00000007210	RPA1	93	56.739	Latimeria_chalumnae
ENSCVAG00000013446	-	93	63.974	ENSLOCG00000006397	rpa1	96	63.974	Lepisosteus_oculatus
ENSCVAG00000013446	-	94	55.189	ENSLAFG00000015354	RPA1	94	55.189	Loxodonta_africana
ENSCVAG00000013446	-	82	53.610	ENSMFAG00000036138	-	98	53.610	Macaca_fascicularis
ENSCVAG00000013446	-	95	53.188	ENSMMUG00000011604	-	96	53.188	Macaca_mulatta
ENSCVAG00000013446	-	96	49.693	ENSMMUG00000002442	-	96	49.693	Macaca_mulatta
ENSCVAG00000013446	-	89	61.314	ENSMNEG00000029837	-	95	61.314	Macaca_nemestrina
ENSCVAG00000013446	-	93	53.451	ENSMNEG00000031632	-	94	53.686	Macaca_nemestrina
ENSCVAG00000013446	-	93	50.872	ENSMLEG00000038768	-	94	51.027	Mandrillus_leucophaeus
ENSCVAG00000013446	-	96	77.042	ENSMAMG00000020097	RPA1	96	77.042	Mastacembelus_armatus
ENSCVAG00000013446	-	96	57.232	ENSMAMG00000017993	rpa1	91	69.807	Mastacembelus_armatus
ENSCVAG00000013446	-	96	73.220	ENSMZEG00005024731	RPA1	96	73.220	Maylandia_zebra
ENSCVAG00000013446	-	96	58.631	ENSMZEG00005007551	rpa1	95	58.631	Maylandia_zebra
ENSCVAG00000013446	-	95	51.254	ENSMGAG00000005315	RPA1	94	51.254	Meleagris_gallopavo
ENSCVAG00000013446	-	93	53.270	ENSMAUG00000010474	Rpa1	95	53.748	Mesocricetus_auratus
ENSCVAG00000013446	-	84	65.037	ENSMICG00000012867	RPA1	96	53.538	Microcebus_murinus
ENSCVAG00000013446	-	96	53.077	ENSMOCG00000013019	Rpa1	96	53.077	Microtus_ochrogaster
ENSCVAG00000013446	-	95	81.980	ENSMMOG00000010868	RPA1	94	81.980	Mola_mola
ENSCVAG00000013446	-	93	57.692	ENSMMOG00000014292	rpa1	96	57.692	Mola_mola
ENSCVAG00000013446	-	95	53.438	ENSMODG00000010549	RPA1	94	53.594	Monodelphis_domestica
ENSCVAG00000013446	-	83	71.429	ENSMALG00000011453	rpa1	95	71.429	Monopterus_albus
ENSCVAG00000013446	-	96	69.597	ENSMALG00000001208	RPA1	97	69.020	Monopterus_albus
ENSCVAG00000013446	-	96	53.643	MGP_CAROLIEiJ_G0016734	Rpa1	96	53.870	Mus_caroli
ENSCVAG00000013446	-	96	53.406	ENSMUSG00000000751	Rpa1	96	53.406	Mus_musculus
ENSCVAG00000013446	-	96	54.096	MGP_PahariEiJ_G0017871	Rpa1	96	54.096	Mus_pahari
ENSCVAG00000013446	-	96	53.323	MGP_SPRETEiJ_G0017577	Rpa1	96	53.323	Mus_spretus
ENSCVAG00000013446	-	96	53.178	ENSMPUG00000013119	RPA1	95	53.178	Mustela_putorius_furo
ENSCVAG00000013446	-	96	52.752	ENSMLUG00000006113	RPA1	96	52.752	Myotis_lucifugus
ENSCVAG00000013446	-	92	53.772	ENSNGAG00000004522	Rpa1	90	53.772	Nannospalax_galili
ENSCVAG00000013446	-	88	69.270	ENSNBRG00000009672	RPA1	86	69.270	Neolamprologus_brichardi
ENSCVAG00000013446	-	74	71.498	ENSNBRG00000020595	rpa1	88	71.498	Neolamprologus_brichardi
ENSCVAG00000013446	-	96	53.775	ENSNLEG00000017149	RPA1	96	53.775	Nomascus_leucogenys
ENSCVAG00000013446	-	94	46.772	ENSMEUG00000006714	RPA1	95	46.772	Notamacropus_eugenii
ENSCVAG00000013446	-	93	55.056	ENSODEG00000009038	RPA1	93	55.056	Octodon_degus
ENSCVAG00000013446	-	96	57.543	ENSONIG00000013135	rpa1	95	57.543	Oreochromis_niloticus
ENSCVAG00000013446	-	93	53.981	ENSOANG00000010880	RPA1	94	54.140	Ornithorhynchus_anatinus
ENSCVAG00000013446	-	96	52.174	ENSOCUG00000001504	RPA1	96	52.174	Oryctolagus_cuniculus
ENSCVAG00000013446	-	96	73.611	ENSORLG00000003368	RPA1	96	73.611	Oryzias_latipes
ENSCVAG00000013446	-	96	57.854	ENSORLG00000004856	rpa1	96	57.854	Oryzias_latipes
ENSCVAG00000013446	-	96	73.700	ENSORLG00020015284	RPA1	96	73.700	Oryzias_latipes_hni
ENSCVAG00000013446	-	96	57.854	ENSORLG00020008980	rpa1	96	57.854	Oryzias_latipes_hni
ENSCVAG00000013446	-	96	57.854	ENSORLG00015013982	rpa1	96	57.854	Oryzias_latipes_hsok
ENSCVAG00000013446	-	96	72.994	ENSORLG00015020383	RPA1	96	72.994	Oryzias_latipes_hsok
ENSCVAG00000013446	-	65	83.371	ENSORLG00015005867	-	99	83.371	Oryzias_latipes_hsok
ENSCVAG00000013446	-	99	68.909	ENSOMEG00000011040	RPA1	97	72.057	Oryzias_melastigma
ENSCVAG00000013446	-	96	56.610	ENSOMEG00000004704	rpa1	93	67.488	Oryzias_melastigma
ENSCVAG00000013446	-	96	53.385	ENSOGAG00000005581	-	96	53.385	Otolemur_garnettii
ENSCVAG00000013446	-	74	63.871	ENSOGAG00000029379	-	93	63.871	Otolemur_garnettii
ENSCVAG00000013446	-	96	52.477	ENSOARG00000014479	RPA1	95	53.406	Ovis_aries
ENSCVAG00000013446	-	96	53.005	ENSPPAG00000039680	RPA1	96	53.005	Pan_paniscus
ENSCVAG00000013446	-	96	54.700	ENSPPRG00000011807	RPA1	96	54.545	Panthera_pardus
ENSCVAG00000013446	-	96	54.884	ENSPTIG00000007898	RPA1	95	54.419	Panthera_tigris_altaica
ENSCVAG00000013446	-	96	53.005	ENSPTRG00000008539	RPA1	96	53.005	Pan_troglodytes
ENSCVAG00000013446	-	96	53.231	ENSPANG00000024592	RPA1	96	53.231	Papio_anubis
ENSCVAG00000013446	-	79	71.739	ENSPKIG00000008053	rpa1	95	56.811	Paramormyrops_kingsleyae
ENSCVAG00000013446	-	93	52.472	ENSPSIG00000015617	RPA1	94	52.472	Pelodiscus_sinensis
ENSCVAG00000013446	-	82	70.283	ENSPMGG00000011589	rpa1	94	70.283	Periophthalmus_magnuspinnatus
ENSCVAG00000013446	-	96	60.092	ENSPMGG00000000543	RPA1	95	64.393	Periophthalmus_magnuspinnatus
ENSCVAG00000013446	-	96	53.643	ENSPEMG00000021061	Rpa1	96	53.643	Peromyscus_maniculatus_bairdii
ENSCVAG00000013446	-	97	52.439	ENSPCIG00000019049	RPA1	96	52.824	Phascolarctos_cinereus
ENSCVAG00000013446	-	96	55.452	ENSPFOG00000003987	rpa1	90	67.139	Poecilia_formosa
ENSCVAG00000013446	-	96	81.804	ENSPLAG00000008844	-	98	81.804	Poecilia_latipinna
ENSCVAG00000013446	-	96	55.452	ENSPLAG00000004984	rpa1	95	55.296	Poecilia_latipinna
ENSCVAG00000013446	-	96	55.452	ENSPMEG00000020602	rpa1	88	68.735	Poecilia_mexicana
ENSCVAG00000013446	-	96	81.960	ENSPMEG00000003627	-	98	81.960	Poecilia_mexicana
ENSCVAG00000013446	-	85	62.774	ENSPREG00000010174	rpa1	95	62.774	Poecilia_reticulata
ENSCVAG00000013446	-	96	81.832	ENSPREG00000010119	RPA1	99	82.508	Poecilia_reticulata
ENSCVAG00000013446	-	96	52.696	ENSPCOG00000001799	RPA1	96	52.696	Propithecus_coquereli
ENSCVAG00000013446	-	95	52.969	ENSPVAG00000002149	RPA1	94	52.969	Pteropus_vampyrus
ENSCVAG00000013446	-	96	73.375	ENSPNYG00000024165	RPA1	96	73.375	Pundamilia_nyererei
ENSCVAG00000013446	-	96	58.787	ENSPNYG00000016316	rpa1	89	71.981	Pundamilia_nyererei
ENSCVAG00000013446	-	86	60.183	ENSPNAG00000008599	rpa1	96	50.538	Pygocentrus_nattereri
ENSCVAG00000013446	-	93	57.447	ENSRNOG00000003123	Rpa1	96	54.264	Rattus_norvegicus
ENSCVAG00000013446	-	96	53.231	ENSRBIG00000036587	RPA1	96	53.231	Rhinopithecus_bieti
ENSCVAG00000013446	-	96	50.154	ENSRROG00000043278	RPA1	96	50.154	Rhinopithecus_roxellana
ENSCVAG00000013446	-	61	34.772	YAR007C	RFA1	67	34.772	Saccharomyces_cerevisiae
ENSCVAG00000013446	-	88	54.209	ENSSBOG00000030233	RPA1	93	54.530	Saimiri_boliviensis_boliviensis
ENSCVAG00000013446	-	96	53.917	ENSSHAG00000007969	RPA1	95	54.378	Sarcophilus_harrisii
ENSCVAG00000013446	-	95	67.015	ENSSFOG00015005362	rpa1	91	67.728	Scleropages_formosus
ENSCVAG00000013446	-	96	73.385	ENSSMAG00000019746	RPA1	96	73.538	Scophthalmus_maximus
ENSCVAG00000013446	-	96	54.348	ENSSDUG00000011949	rpa1	90	71.190	Seriola_dumerili
ENSCVAG00000013446	-	96	74.695	ENSSDUG00000016358	RPA1	96	74.848	Seriola_dumerili
ENSCVAG00000013446	-	80	71.360	ENSSLDG00000011806	rpa1	92	71.360	Seriola_lalandi_dorsalis
ENSCVAG00000013446	-	96	73.676	ENSSLDG00000020784	RPA1	96	73.828	Seriola_lalandi_dorsalis
ENSCVAG00000013446	-	82	48.375	ENSSARG00000007506	RPA1	82	48.375	Sorex_araneus
ENSCVAG00000013446	-	92	51.696	ENSSPUG00000007223	RPA1	93	52.589	Sphenodon_punctatus
ENSCVAG00000013446	-	87	69.784	ENSSPAG00000009903	rpa1	96	69.784	Stegastes_partitus
ENSCVAG00000013446	-	95	69.074	ENSSPAG00000011165	RPA1	96	67.388	Stegastes_partitus
ENSCVAG00000013446	-	84	63.529	ENSSSCG00000017822	RPA1	95	63.529	Sus_scrofa
ENSCVAG00000013446	-	95	51.487	ENSTGUG00000005775	RPA1	94	51.487	Taeniopygia_guttata
ENSCVAG00000013446	-	96	65.819	ENSTRUG00000000405	RPA1	97	66.331	Takifugu_rubripes
ENSCVAG00000013446	-	96	56.765	ENSTRUG00000003616	rpa1	95	56.765	Takifugu_rubripes
ENSCVAG00000013446	-	96	57.099	ENSTNIG00000016199	rpa1	95	57.298	Tetraodon_nigroviridis
ENSCVAG00000013446	-	61	65.281	ENSTBEG00000002709	RPA1	68	65.281	Tupaia_belangeri
ENSCVAG00000013446	-	96	52.248	ENSTTRG00000001169	RPA1	95	53.643	Tursiops_truncatus
ENSCVAG00000013446	-	87	75.000	ENSUAMG00000015676	RPA1	95	75.000	Ursus_americanus
ENSCVAG00000013446	-	96	52.308	ENSUMAG00000009328	RPA1	95	65.526	Ursus_maritimus
ENSCVAG00000013446	-	95	52.106	ENSVPAG00000009443	RPA1	95	52.025	Vicugna_pacos
ENSCVAG00000013446	-	96	54.419	ENSVVUG00000021715	RPA1	95	54.574	Vulpes_vulpes
ENSCVAG00000013446	-	77	67.920	ENSXETG00000013538	rpa1	94	55.329	Xenopus_tropicalis
ENSCVAG00000013446	-	92	72.447	ENSXCOG00000009899	-	96	72.771	Xiphophorus_couchianus
ENSCVAG00000013446	-	84	69.249	ENSXCOG00000010068	rpa1	95	69.249	Xiphophorus_couchianus
ENSCVAG00000013446	-	86	68.496	ENSXMAG00000004102	rpa1	95	68.496	Xiphophorus_maculatus
ENSCVAG00000013446	-	96	79.118	ENSXMAG00000010333	RPA1	97	79.265	Xiphophorus_maculatus