EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000013606 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zinc finger matrin-type protein 4-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 34526 bases
Position: chrKL652501.1:3260007-3294532
Accession: 107089680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000011348	zf-met	PF12874.7	2.4e-27	1	4
ENSCVAP00000011348	zf-met	PF12874.7	2.4e-27	2	4
ENSCVAP00000011348	zf-met	PF12874.7	2.4e-27	3	4
ENSCVAP00000011348	zf-met	PF12874.7	2.4e-27	4	4
ENSCVAP00000011348	zf-C2H2_jaz	PF12171.8	1.1e-20	1	2
ENSCVAP00000011348	zf-C2H2_jaz	PF12171.8	1.1e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000018281	-	684	XM_015382631	ENSCVAP00000011348	227 (aa)	XP_015238117	-

Gene Model

Click here to download ENSCVAG00000013606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000013606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000013606	zgc:171482	96	43.946	ENSCVAG00000022651	-	65	43.779
ENSCVAG00000013606	zgc:171482	99	63.717	ENSCVAG00000000113	zmat4a	85	63.717

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000013606	zgc:171482	100	88.987	ENSAPOG00000019970	zgc:171482	100	88.987	Acanthochromis_polyacanthus
ENSCVAG00000013606	zgc:171482	80	91.538	ENSACIG00000021512	zgc:171482	97	91.538	Amphilophus_citrinellus
ENSCVAG00000013606	zgc:171482	80	96.694	ENSAOCG00000000751	zgc:171482	89	96.694	Amphiprion_ocellaris
ENSCVAG00000013606	zgc:171482	80	96.694	ENSAPEG00000014154	zgc:171482	87	96.694	Amphiprion_percula
ENSCVAG00000013606	zgc:171482	100	88.546	ENSATEG00000001371	zgc:171482	100	87.826	Anabas_testudineus
ENSCVAG00000013606	zgc:171482	80	96.694	ENSACLG00000010511	zgc:171482	84	96.694	Astatotilapia_calliptera
ENSCVAG00000013606	zgc:171482	100	83.260	ENSAMXG00000002299	zgc:171482	100	84.141	Astyanax_mexicanus
ENSCVAG00000013606	zgc:171482	100	70.930	ENSCSEG00000006509	zgc:171482	100	70.930	Cynoglossus_semilaevis
ENSCVAG00000013606	zgc:171482	99	82.743	ENSDARG00000074415	zgc:171482	97	82.743	Danio_rerio
ENSCVAG00000013606	zgc:171482	80	94.068	ENSELUG00000021817	zgc:171482	85	94.068	Esox_lucius
ENSCVAG00000013606	zgc:171482	81	66.486	ENSELUG00000017517	-	60	84.444	Esox_lucius
ENSCVAG00000013606	zgc:171482	100	88.987	ENSFHEG00000002233	zgc:171482	100	88.987	Fundulus_heteroclitus
ENSCVAG00000013606	zgc:171482	100	85.903	ENSGMOG00000010508	zgc:171482	100	85.903	Gadus_morhua
ENSCVAG00000013606	zgc:171482	100	97.541	ENSGAFG00000009398	zgc:171482	100	74.419	Gambusia_affinis
ENSCVAG00000013606	zgc:171482	100	88.793	ENSGACG00000007680	zgc:171482	100	88.793	Gasterosteus_aculeatus
ENSCVAG00000013606	zgc:171482	80	96.694	ENSHBUG00000023289	zgc:171482	91	96.694	Haplochromis_burtoni
ENSCVAG00000013606	zgc:171482	80	90.909	ENSHCOG00000018086	zgc:171482	90	90.909	Hippocampus_comes
ENSCVAG00000013606	zgc:171482	80	94.017	ENSIPUG00000000361	zgc:171482	85	94.017	Ictalurus_punctatus
ENSCVAG00000013606	zgc:171482	100	86.784	ENSKMAG00000005077	zgc:171482	86	86.784	Kryptolebias_marmoratus
ENSCVAG00000013606	zgc:171482	80	96.694	ENSLBEG00000023823	zgc:171482	86	96.694	Labrus_bergylta
ENSCVAG00000013606	zgc:171482	100	82.379	ENSLOCG00000008863	zgc:171482	97	82.379	Lepisosteus_oculatus
ENSCVAG00000013606	zgc:171482	99	87.770	ENSMAMG00000001031	zgc:171482	80	97.521	Mastacembelus_armatus
ENSCVAG00000013606	zgc:171482	100	88.546	ENSMZEG00005027721	zgc:171482	100	88.546	Maylandia_zebra
ENSCVAG00000013606	zgc:171482	86	96.694	ENSMMOG00000010523	zgc:171482	97	96.694	Mola_mola
ENSCVAG00000013606	zgc:171482	100	90.830	ENSMALG00000017883	zgc:171482	100	90.830	Monopterus_albus
ENSCVAG00000013606	zgc:171482	80	97.414	ENSNBRG00000021035	zgc:171482	87	97.414	Neolamprologus_brichardi
ENSCVAG00000013606	zgc:171482	99	91.150	ENSONIG00000018365	zgc:171482	98	91.150	Oreochromis_niloticus
ENSCVAG00000013606	zgc:171482	100	89.427	ENSORLG00000007607	zgc:171482	100	89.427	Oryzias_latipes
ENSCVAG00000013606	zgc:171482	100	87.336	ENSORLG00020003563	zgc:171482	100	87.336	Oryzias_latipes_hni
ENSCVAG00000013606	zgc:171482	100	89.427	ENSORLG00015008552	zgc:171482	100	89.427	Oryzias_latipes_hsok
ENSCVAG00000013606	zgc:171482	80	88.806	ENSOMEG00000003526	zgc:171482	94	88.806	Oryzias_melastigma
ENSCVAG00000013606	zgc:171482	86	80.851	ENSPKIG00000015911	-	98	80.851	Paramormyrops_kingsleyae
ENSCVAG00000013606	zgc:171482	80	90.000	ENSPKIG00000016244	zgc:171482	82	87.826	Paramormyrops_kingsleyae
ENSCVAG00000013606	zgc:171482	99	85.774	ENSPMGG00000020230	zgc:171482	100	85.774	Periophthalmus_magnuspinnatus
ENSCVAG00000013606	zgc:171482	99	87.029	ENSPFOG00000001974	zgc:171482	96	87.029	Poecilia_formosa
ENSCVAG00000013606	zgc:171482	100	91.630	ENSPLAG00000003327	zgc:171482	100	91.630	Poecilia_latipinna
ENSCVAG00000013606	zgc:171482	99	98.333	ENSPMEG00000004988	zgc:171482	100	86.842	Poecilia_mexicana
ENSCVAG00000013606	zgc:171482	89	97.521	ENSPREG00000019241	zgc:171482	91	97.521	Poecilia_reticulata
ENSCVAG00000013606	zgc:171482	80	96.694	ENSPNYG00000007773	zgc:171482	84	96.694	Pundamilia_nyererei
ENSCVAG00000013606	zgc:171482	99	82.609	ENSPNAG00000007619	zgc:171482	97	83.550	Pygocentrus_nattereri
ENSCVAG00000013606	zgc:171482	80	88.034	ENSSFOG00015016149	zgc:171482	94	88.034	Scleropages_formosus
ENSCVAG00000013606	zgc:171482	88	89.655	ENSSFOG00015021238	zgc:171482	78	89.655	Scleropages_formosus
ENSCVAG00000013606	zgc:171482	80	97.458	ENSSMAG00000002715	zgc:171482	76	97.458	Scophthalmus_maximus
ENSCVAG00000013606	zgc:171482	80	97.521	ENSSDUG00000008773	zgc:171482	85	97.521	Seriola_dumerili
ENSCVAG00000013606	zgc:171482	80	97.521	ENSSLDG00000019510	zgc:171482	85	97.521	Seriola_lalandi_dorsalis
ENSCVAG00000013606	zgc:171482	80	98.319	ENSSPAG00000013724	zgc:171482	94	98.319	Stegastes_partitus
ENSCVAG00000013606	zgc:171482	85	96.522	ENSTRUG00000005705	zgc:171482	71	96.522	Takifugu_rubripes
ENSCVAG00000013606	zgc:171482	100	78.947	ENSTNIG00000008679	zgc:171482	100	78.947	Tetraodon_nigroviridis
ENSCVAG00000013606	zgc:171482	84	60.993	ENSXETG00000013525	zmat4	83	63.359	Xenopus_tropicalis
ENSCVAG00000013606	zgc:171482	100	88.618	ENSXMAG00000002641	zgc:171482	100	68.208	Xiphophorus_maculatus