EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000013624 (Gene tree)
Gene ID: 107104293
Gene Symbol: -
Alias: -
Full Name: RNA-binding Raly-like protein
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 60245 bases
Position: chrKL654180.1:30731-90975
Accession: 107104293
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000011380	RRM_1	PF00076.22	2.4e-13	1	1
ENSCVAP00000011381	RRM_1	PF00076.22	2.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000018316	-	1636	XM_015404269	ENSCVAP00000011380	292 (aa)	XP_015259755	UPI0007428BFE
ENSCVAT00000018290	-	549	-	ENSCVAP00000011356	182 (aa)	-	-
ENSCVAT00000018347	-	1696	XM_015404266	ENSCVAP00000011381	312 (aa)	XP_015259752	UPI000742B1BB

Gene Model

Click here to download ENSCVAG00000013624's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000013624's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000013624	-	83	52.191	ENSCVAG00000016981	-	85	48.136
ENSCVAG00000013624	-	100	72.635	ENSCVAG00000018104	-	100	72.635
ENSCVAG00000013624	-	76	50.679	ENSCVAG00000002797	-	71	47.368

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000013624	-	100	93.151	ENSAPOG00000008744	-	100	93.151	Acanthochromis_polyacanthus
ENSCVAG00000013624	-	97	83.849	ENSACIG00000007143	-	97	83.849	Amphilophus_citrinellus
ENSCVAG00000013624	-	100	95.205	ENSAOCG00000023599	-	100	95.205	Amphiprion_ocellaris
ENSCVAG00000013624	-	100	72.973	ENSAOCG00000001605	-	100	72.973	Amphiprion_ocellaris
ENSCVAG00000013624	-	97	84.746	ENSATEG00000022219	-	93	89.153	Anabas_testudineus
ENSCVAG00000013624	-	86	71.315	ENSATEG00000023356	-	96	71.315	Anabas_testudineus
ENSCVAG00000013624	-	100	71.959	ENSACLG00000006949	-	100	71.959	Astatotilapia_calliptera
ENSCVAG00000013624	-	100	94.863	ENSACLG00000011720	-	100	94.521	Astatotilapia_calliptera
ENSCVAG00000013624	-	100	71.959	ENSAMXG00000019031	-	100	71.959	Astyanax_mexicanus
ENSCVAG00000013624	-	100	63.423	ENSAMXG00000032617	-	100	64.094	Astyanax_mexicanus
ENSCVAG00000013624	-	100	83.562	ENSCSEG00000014237	-	100	83.562	Cynoglossus_semilaevis
ENSCVAG00000013624	-	60	74.719	ENSDARG00000090292	ralyl	81	79.012	Danio_rerio
ENSCVAG00000013624	-	93	62.182	ENSELUG00000001702	-	96	62.366	Esox_lucius
ENSCVAG00000013624	-	57	72.727	ENSGMOG00000005914	-	100	72.727	Gadus_morhua
ENSCVAG00000013624	-	59	80.347	ENSGACG00000004991	-	91	82.530	Gasterosteus_aculeatus
ENSCVAG00000013624	-	100	94.863	ENSHBUG00000010040	-	100	94.863	Haplochromis_burtoni
ENSCVAG00000013624	-	100	71.959	ENSHBUG00000015412	-	100	71.959	Haplochromis_burtoni
ENSCVAG00000013624	-	100	71.959	ENSIPUG00000000507	ralyl	100	72.973	Ictalurus_punctatus
ENSCVAG00000013624	-	100	91.438	ENSKMAG00000022093	-	100	92.123	Kryptolebias_marmoratus
ENSCVAG00000013624	-	100	72.635	ENSKMAG00000018155	-	100	73.311	Kryptolebias_marmoratus
ENSCVAG00000013624	-	100	72.054	ENSLBEG00000011011	-	100	71.959	Labrus_bergylta
ENSCVAG00000013624	-	100	91.096	ENSLBEG00000012873	-	100	91.096	Labrus_bergylta
ENSCVAG00000013624	-	100	69.932	ENSLOCG00000012787	ralyl	99	68.919	Lepisosteus_oculatus
ENSCVAG00000013624	-	99	87.241	ENSMAMG00000001723	-	97	87.241	Mastacembelus_armatus
ENSCVAG00000013624	-	100	94.863	ENSMZEG00005024447	-	100	94.521	Maylandia_zebra
ENSCVAG00000013624	-	98	70.169	ENSMZEG00005018748	-	99	70.169	Maylandia_zebra
ENSCVAG00000013624	-	97	83.108	ENSMMOG00000020441	-	86	84.797	Mola_mola
ENSCVAG00000013624	-	100	71.284	ENSMALG00000012952	-	100	71.284	Monopterus_albus
ENSCVAG00000013624	-	100	92.466	ENSMALG00000019019	-	78	92.466	Monopterus_albus
ENSCVAG00000013624	-	97	84.192	ENSNBRG00000011206	-	97	84.192	Neolamprologus_brichardi
ENSCVAG00000013624	-	98	70.169	ENSNBRG00000011376	-	99	70.169	Neolamprologus_brichardi
ENSCVAG00000013624	-	100	88.356	ENSORLG00000017934	-	100	88.014	Oryzias_latipes
ENSCVAG00000013624	-	100	73.311	ENSORLG00000012719	-	100	73.311	Oryzias_latipes
ENSCVAG00000013624	-	100	87.329	ENSORLG00020000082	-	100	86.986	Oryzias_latipes_hni
ENSCVAG00000013624	-	100	73.311	ENSORLG00020004438	-	100	73.311	Oryzias_latipes_hni
ENSCVAG00000013624	-	100	73.649	ENSORLG00015004727	-	100	73.649	Oryzias_latipes_hsok
ENSCVAG00000013624	-	100	87.671	ENSORLG00015004280	-	100	87.329	Oryzias_latipes_hsok
ENSCVAG00000013624	-	100	88.699	ENSOMEG00000011821	-	100	88.699	Oryzias_melastigma
ENSCVAG00000013624	-	100	72.973	ENSOMEG00000001170	-	100	72.973	Oryzias_melastigma
ENSCVAG00000013624	-	100	73.038	ENSPKIG00000015926	-	100	73.038	Paramormyrops_kingsleyae
ENSCVAG00000013624	-	78	67.382	ENSPMGG00000014481	-	95	69.397	Periophthalmus_magnuspinnatus
ENSCVAG00000013624	-	99	75.676	ENSPMGG00000009532	-	99	73.986	Periophthalmus_magnuspinnatus
ENSCVAG00000013624	-	97	90.816	ENSPFOG00000006120	-	99	90.816	Poecilia_formosa
ENSCVAG00000013624	-	97	86.268	ENSPLAG00000009877	-	76	85.664	Poecilia_latipinna
ENSCVAG00000013624	-	97	72.069	ENSPLAG00000011323	ralyl	100	72.069	Poecilia_latipinna
ENSCVAG00000013624	-	97	86.268	ENSPMEG00000013624	-	80	85.664	Poecilia_mexicana
ENSCVAG00000013624	-	97	72.069	ENSPMEG00000023847	ralyl	100	72.069	Poecilia_mexicana
ENSCVAG00000013624	-	100	95.513	ENSPREG00000013805	-	100	95.513	Poecilia_reticulata
ENSCVAG00000013624	-	97	71.034	ENSPREG00000001956	ralyl	100	71.034	Poecilia_reticulata
ENSCVAG00000013624	-	98	70.169	ENSPNYG00000003548	-	99	70.169	Pundamilia_nyererei
ENSCVAG00000013624	-	97	84.192	ENSPNYG00000008772	-	97	84.192	Pundamilia_nyererei
ENSCVAG00000013624	-	100	66.438	ENSPNAG00000026098	-	100	66.438	Pygocentrus_nattereri
ENSCVAG00000013624	-	100	71.959	ENSPNAG00000000498	-	88	71.380	Pygocentrus_nattereri
ENSCVAG00000013624	-	100	74.324	ENSSFOG00015009401	-	100	74.324	Scleropages_formosus
ENSCVAG00000013624	-	97	65.385	ENSSFOG00015004575	-	96	65.035	Scleropages_formosus
ENSCVAG00000013624	-	100	71.622	ENSSMAG00000005608	-	100	72.727	Scophthalmus_maximus
ENSCVAG00000013624	-	97	87.719	ENSSMAG00000015907	-	93	87.719	Scophthalmus_maximus
ENSCVAG00000013624	-	100	94.863	ENSSDUG00000012473	-	100	94.863	Seriola_dumerili
ENSCVAG00000013624	-	100	72.635	ENSSDUG00000007587	-	100	72.635	Seriola_dumerili
ENSCVAG00000013624	-	100	94.521	ENSSLDG00000011534	-	100	94.521	Seriola_lalandi_dorsalis
ENSCVAG00000013624	-	100	72.054	ENSSLDG00000020603	-	100	71.622	Seriola_lalandi_dorsalis
ENSCVAG00000013624	-	97	79.152	ENSSPAG00000013858	-	96	77.055	Stegastes_partitus
ENSCVAG00000013624	-	97	87.633	ENSTRUG00000003829	-	95	85.512	Takifugu_rubripes
ENSCVAG00000013624	-	97	83.673	ENSTNIG00000005594	-	99	83.673	Tetraodon_nigroviridis
ENSCVAG00000013624	-	100	64.765	ENSXETG00000017729	ralyl	99	64.765	Xenopus_tropicalis
ENSCVAG00000013624	-	97	69.799	ENSXCOG00000015156	-	93	69.799	Xiphophorus_couchianus
ENSCVAG00000013624	-	100	73.311	ENSXMAG00000008396	-	100	73.311	Xiphophorus_maculatus
ENSCVAG00000013624	-	100	95.205	ENSXMAG00000007614	-	100	95.205	Xiphophorus_maculatus