EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000013971 (Gene tree)
Gene ID: 107083118
Gene Symbol: raver1
Alias: zgc:112236
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 10880 bases
Position: chrKL652568.1:1201533-1212412
Accession: 107083118
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000027500	RRM_1	PF00076.22	8e-30	1	2
ENSCVAP00000027500	RRM_1	PF00076.22	8e-30	2	2
ENSCVAP00000027495	RRM_1	PF00076.22	8.1e-30	1	2
ENSCVAP00000027495	RRM_1	PF00076.22	8.1e-30	2	2
ENSCVAP00000011594	RRM_1	PF00076.22	8.5e-30	1	2
ENSCVAP00000011594	RRM_1	PF00076.22	8.5e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000018605	-	2717	-	ENSCVAP00000011594	740 (aa)	-	-
ENSCVAT00000030008	-	2190	-	ENSCVAP00000027495	729 (aa)	-	-
ENSCVAT00000018585	-	2681	XM_015372114	ENSCVAP00000027500	728 (aa)	XP_015227600	-

Gene Model

Click here to download ENSCVAG00000013971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000013971's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000013971	raver1	51	53.947	ENSCVAG00000002687	raver2	77	57.910

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000013971	raver1	92	49.932	ENSG00000161847	RAVER1	97	50.273	Homo_sapiens
ENSCVAG00000013971	raver1	98	81.755	ENSAPOG00000017267	raver1	92	81.395	Acanthochromis_polyacanthus
ENSCVAG00000013971	raver1	81	57.576	ENSAMEG00000011738	RAVER1	94	49.389	Ailuropoda_melanoleuca
ENSCVAG00000013971	raver1	98	82.427	ENSAOCG00000005128	raver1	97	82.055	Amphiprion_ocellaris
ENSCVAG00000013971	raver1	98	82.410	ENSAPEG00000010854	raver1	100	82.041	Amphiprion_percula
ENSCVAG00000013971	raver1	98	80.362	ENSATEG00000021004	raver1	100	80.027	Anabas_testudineus
ENSCVAG00000013971	raver1	80	48.899	ENSACAG00000008386	-	91	49.608	Anolis_carolinensis
ENSCVAG00000013971	raver1	82	56.566	ENSANAG00000028226	RAVER1	95	50.069	Aotus_nancymaae
ENSCVAG00000013971	raver1	100	79.372	ENSACLG00000018492	raver1	95	79.372	Astatotilapia_calliptera
ENSCVAG00000013971	raver1	97	63.512	ENSAMXG00000005132	raver1	100	62.533	Astyanax_mexicanus
ENSCVAG00000013971	raver1	92	50.997	ENSBTAG00000015721	RAVER1	92	68.169	Bos_taurus
ENSCVAG00000013971	raver1	68	57.371	ENSCJAG00000005671	RAVER1	95	50.205	Callithrix_jacchus
ENSCVAG00000013971	raver1	93	49.659	ENSCAFG00000017861	RAVER1	95	51.456	Canis_familiaris
ENSCVAG00000013971	raver1	93	49.659	ENSCAFG00020024449	RAVER1	98	51.456	Canis_lupus_dingo
ENSCVAG00000013971	raver1	68	65.111	ENSCHIG00000006718	RAVER1	97	50.476	Capra_hircus
ENSCVAG00000013971	raver1	51	65.160	ENSTSYG00000027107	RAVER1	100	53.030	Carlito_syrichta
ENSCVAG00000013971	raver1	77	59.300	ENSCAPG00000002269	RAVER1	100	50.659	Cavia_aperea
ENSCVAG00000013971	raver1	81	57.505	ENSCPOG00000001008	RAVER1	97	51.552	Cavia_porcellus
ENSCVAG00000013971	raver1	92	49.931	ENSCCAG00000031723	RAVER1	95	50.342	Cebus_capucinus
ENSCVAG00000013971	raver1	82	55.706	ENSCATG00000043863	RAVER1	95	50.480	Cercocebus_atys
ENSCVAG00000013971	raver1	91	51.111	ENSCLAG00000009336	RAVER1	97	50.136	Chinchilla_lanigera
ENSCVAG00000013971	raver1	81	56.299	ENSCSAG00000007317	RAVER1	80	50.833	Chlorocebus_sabaeus
ENSCVAG00000013971	raver1	92	52.174	ENSCPBG00000005349	-	97	51.319	Chrysemys_picta_bellii
ENSCVAG00000013971	raver1	82	55.706	ENSCANG00000008337	RAVER1	95	50.759	Colobus_angolensis_palliatus
ENSCVAG00000013971	raver1	81	61.616	ENSCGRG00001013260	-	100	48.320	Cricetulus_griseus_chok1gshd
ENSCVAG00000013971	raver1	81	61.616	ENSCGRG00000015138	-	100	48.320	Cricetulus_griseus_crigri
ENSCVAG00000013971	raver1	98	73.072	ENSCSEG00000021092	raver1	100	72.739	Cynoglossus_semilaevis
ENSCVAG00000013971	raver1	98	64.779	ENSDARG00000052617	raver1	100	63.870	Danio_rerio
ENSCVAG00000013971	raver1	58	61.890	ENSDNOG00000035742	-	62	58.402	Dasypus_novemcinctus
ENSCVAG00000013971	raver1	67	52.268	ENSDORG00000010106	-	96	47.826	Dipodomys_ordii
ENSCVAG00000013971	raver1	51	50.806	ENSETEG00000008201	-	55	68.844	Echinops_telfairi
ENSCVAG00000013971	raver1	51	67.553	ENSEASG00005010544	-	68	67.553	Equus_asinus_asinus
ENSCVAG00000013971	raver1	81	56.566	ENSECAG00000024966	RAVER1	80	57.455	Equus_caballus
ENSCVAG00000013971	raver1	98	72.199	ENSELUG00000023287	raver1	100	71.875	Esox_lucius
ENSCVAG00000013971	raver1	69	64.976	ENSFCAG00000009435	RAVER1	94	50.476	Felis_catus
ENSCVAG00000013971	raver1	91	48.207	ENSFDAG00000015113	RAVER1	97	49.731	Fukomys_damarensis
ENSCVAG00000013971	raver1	94	67.742	ENSGMOG00000003649	raver1	100	68.443	Gadus_morhua
ENSCVAG00000013971	raver1	65	40.041	ENSGALG00000050608	-	51	39.059	Gallus_gallus
ENSCVAG00000013971	raver1	100	85.578	ENSGAFG00000015944	raver1	100	85.578	Gambusia_affinis
ENSCVAG00000013971	raver1	88	79.102	ENSGACG00000013818	raver1	87	81.038	Gasterosteus_aculeatus
ENSCVAG00000013971	raver1	80	68.280	ENSGAGG00000011748	-	96	68.280	Gopherus_agassizii
ENSCVAG00000013971	raver1	92	49.795	ENSGGOG00000006015	RAVER1	95	50.137	Gorilla_gorilla
ENSCVAG00000013971	raver1	99	79.367	ENSHBUG00000021210	raver1	100	74.321	Haplochromis_burtoni
ENSCVAG00000013971	raver1	79	60.606	ENSHGLG00000015460	RAVER1	97	49.730	Heterocephalus_glaber_female
ENSCVAG00000013971	raver1	79	60.606	ENSHGLG00100000812	RAVER1	97	49.730	Heterocephalus_glaber_male
ENSCVAG00000013971	raver1	100	71.623	ENSHCOG00000000449	raver1	98	72.925	Hippocampus_comes
ENSCVAG00000013971	raver1	98	65.432	ENSIPUG00000013153	raver1	100	66.038	Ictalurus_punctatus
ENSCVAG00000013971	raver1	93	49.074	ENSSTOG00000003241	RAVER1	98	50.403	Ictidomys_tridecemlineatus
ENSCVAG00000013971	raver1	86	58.182	ENSJJAG00000018219	-	100	50.067	Jaculus_jaculus
ENSCVAG00000013971	raver1	100	77.687	ENSKMAG00000017355	raver1	100	77.687	Kryptolebias_marmoratus
ENSCVAG00000013971	raver1	92	78.235	ENSLBEG00000008268	raver1	96	78.235	Labrus_bergylta
ENSCVAG00000013971	raver1	75	61.386	ENSLACG00000005809	-	99	49.857	Latimeria_chalumnae
ENSCVAG00000013971	raver1	98	60.000	ENSLOCG00000007500	raver1	100	59.898	Lepisosteus_oculatus
ENSCVAG00000013971	raver1	92	51.754	ENSLAFG00000003664	-	98	56.522	Loxodonta_africana
ENSCVAG00000013971	raver1	91	50.413	ENSMFAG00000037977	RAVER1	94	50.833	Macaca_fascicularis
ENSCVAG00000013971	raver1	81	56.299	ENSMMUG00000014897	RAVER1	94	50.833	Macaca_mulatta
ENSCVAG00000013971	raver1	81	56.299	ENSMNEG00000028390	RAVER1	94	50.833	Macaca_nemestrina
ENSCVAG00000013971	raver1	82	55.899	ENSMLEG00000041959	RAVER1	95	50.617	Mandrillus_leucophaeus
ENSCVAG00000013971	raver1	98	79.363	ENSMAMG00000012059	raver1	100	78.912	Mastacembelus_armatus
ENSCVAG00000013971	raver1	100	79.372	ENSMZEG00005019002	raver1	100	79.372	Maylandia_zebra
ENSCVAG00000013971	raver1	81	61.616	ENSMAUG00000017948	-	83	61.616	Mesocricetus_auratus
ENSCVAG00000013971	raver1	92	51.206	ENSMICG00000010326	RAVER1	97	52.199	Microcebus_murinus
ENSCVAG00000013971	raver1	81	61.616	ENSMOCG00000015553	-	98	49.597	Microtus_ochrogaster
ENSCVAG00000013971	raver1	98	78.393	ENSMMOG00000012093	raver1	100	77.959	Mola_mola
ENSCVAG00000013971	raver1	89	50.145	ENSMODG00000005584	-	87	50.729	Monodelphis_domestica
ENSCVAG00000013971	raver1	100	75.904	ENSMALG00000016569	raver1	100	77.038	Monopterus_albus
ENSCVAG00000013971	raver1	83	61.616	MGP_CAROLIEiJ_G0031860	-	98	49.800	Mus_caroli
ENSCVAG00000013971	raver1	81	61.616	ENSMUSG00000010205	Raver1	98	49.471	Mus_musculus
ENSCVAG00000013971	raver1	81	61.616	MGP_PahariEiJ_G0014726	-	98	49.349	Mus_pahari
ENSCVAG00000013971	raver1	81	61.616	MGP_SPRETEiJ_G0032984	-	98	49.666	Mus_spretus
ENSCVAG00000013971	raver1	81	57.576	ENSMPUG00000006712	RAVER1	79	59.596	Mustela_putorius_furo
ENSCVAG00000013971	raver1	91	50.140	ENSMLUG00000012328	RAVER1	96	51.336	Myotis_lucifugus
ENSCVAG00000013971	raver1	81	60.606	ENSNGAG00000001260	-	98	49.324	Nannospalax_galili
ENSCVAG00000013971	raver1	100	71.175	ENSNBRG00000010139	raver1	100	70.628	Neolamprologus_brichardi
ENSCVAG00000013971	raver1	82	57.576	ENSNLEG00000012181	RAVER1	95	50.343	Nomascus_leucogenys
ENSCVAG00000013971	raver1	75	60.606	ENSMEUG00000003281	-	82	61.616	Notamacropus_eugenii
ENSCVAG00000013971	raver1	66	57.551	ENSODEG00000016260	RAVER1	77	75.439	Octodon_degus
ENSCVAG00000013971	raver1	92	78.319	ENSONIG00000001559	raver1	100	78.402	Oreochromis_niloticus
ENSCVAG00000013971	raver1	92	50.211	ENSOCUG00000020918	RAVER1	97	49.930	Oryctolagus_cuniculus
ENSCVAG00000013971	raver1	100	77.007	ENSORLG00000005458	raver1	100	77.007	Oryzias_latipes
ENSCVAG00000013971	raver1	100	77.415	ENSORLG00020004392	raver1	100	77.415	Oryzias_latipes_hni
ENSCVAG00000013971	raver1	100	77.415	ENSORLG00015017222	raver1	100	77.415	Oryzias_latipes_hsok
ENSCVAG00000013971	raver1	92	84.906	ENSOMEG00000023956	raver1	100	84.906	Oryzias_melastigma
ENSCVAG00000013971	raver1	82	56.190	ENSOGAG00000011071	RAVER1	82	56.809	Otolemur_garnettii
ENSCVAG00000013971	raver1	64	78.846	ENSOARG00000015886	RAVER1	95	47.446	Ovis_aries
ENSCVAG00000013971	raver1	92	49.932	ENSPPAG00000002611	RAVER1	95	50.273	Pan_paniscus
ENSCVAG00000013971	raver1	93	49.333	ENSPPRG00000009912	RAVER1	94	50.545	Panthera_pardus
ENSCVAG00000013971	raver1	92	49.932	ENSPTRG00000010466	RAVER1	95	50.273	Pan_troglodytes
ENSCVAG00000013971	raver1	82	55.706	ENSPANG00000004122	RAVER1	95	50.480	Papio_anubis
ENSCVAG00000013971	raver1	81	61.616	ENSPEMG00000016411	-	100	49.409	Peromyscus_maniculatus_bairdii
ENSCVAG00000013971	raver1	93	52.408	ENSPCIG00000018695	-	97	53.525	Phascolarctos_cinereus
ENSCVAG00000013971	raver1	100	85.944	ENSPFOG00000007016	raver1	100	85.944	Poecilia_formosa
ENSCVAG00000013971	raver1	95	84.120	ENSPLAG00000020793	raver1	99	84.120	Poecilia_latipinna
ENSCVAG00000013971	raver1	100	85.598	ENSPMEG00000011220	raver1	100	85.598	Poecilia_mexicana
ENSCVAG00000013971	raver1	100	80.082	ENSPREG00000006864	raver1	100	80.082	Poecilia_reticulata
ENSCVAG00000013971	raver1	92	49.391	ENSPPYG00000010514	RAVER1	81	50.616	Pongo_abelii
ENSCVAG00000013971	raver1	92	49.590	ENSPCOG00000026605	RAVER1	95	50.612	Propithecus_coquereli
ENSCVAG00000013971	raver1	100	73.871	ENSPNYG00000013284	raver1	100	73.324	Pundamilia_nyererei
ENSCVAG00000013971	raver1	98	67.077	ENSPNAG00000015476	raver1	100	66.174	Pygocentrus_nattereri
ENSCVAG00000013971	raver1	91	48.400	ENSRNOG00000020710	Raver1	100	48.774	Rattus_norvegicus
ENSCVAG00000013971	raver1	92	51.416	ENSRBIG00000034702	RAVER1	95	52.051	Rhinopithecus_bieti
ENSCVAG00000013971	raver1	92	51.700	ENSRROG00000031186	RAVER1	95	52.051	Rhinopithecus_roxellana
ENSCVAG00000013971	raver1	92	51.690	ENSSBOG00000023423	RAVER1	95	52.254	Saimiri_boliviensis_boliviensis
ENSCVAG00000013971	raver1	85	52.352	ENSSHAG00000008181	-	90	52.986	Sarcophilus_harrisii
ENSCVAG00000013971	raver1	98	80.272	ENSSMAG00000004546	raver1	100	79.813	Scophthalmus_maximus
ENSCVAG00000013971	raver1	98	82.548	ENSSDUG00000021063	raver1	100	82.041	Seriola_dumerili
ENSCVAG00000013971	raver1	98	82.410	ENSSLDG00000014505	raver1	100	81.905	Seriola_lalandi_dorsalis
ENSCVAG00000013971	raver1	98	83.380	ENSSPAG00000000688	raver1	100	82.993	Stegastes_partitus
ENSCVAG00000013971	raver1	93	50.274	ENSSSCG00000013650	-	96	51.836	Sus_scrofa
ENSCVAG00000013971	raver1	98	73.967	ENSTRUG00000025641	raver1	100	73.613	Takifugu_rubripes
ENSCVAG00000013971	raver1	91	49.794	ENSUAMG00000020385	RAVER1	94	50.481	Ursus_americanus
ENSCVAG00000013971	raver1	93	49.659	ENSVVUG00000028976	RAVER1	95	51.456	Vulpes_vulpes
ENSCVAG00000013971	raver1	100	48.889	ENSXETG00000011622	raver1	100	48.889	Xenopus_tropicalis
ENSCVAG00000013971	raver1	100	86.549	ENSXCOG00000016368	raver1	100	86.549	Xiphophorus_couchianus
ENSCVAG00000013971	raver1	100	86.531	ENSXMAG00000000217	raver1	100	86.531	Xiphophorus_maculatus