EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000014059 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specificity factor subunit 1-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 26704 bases
Position: chrKL652839.1:62150-88853
Accession: 107091493
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000011609	CPSF_A	PF03178.15	3.5e-90	1	1
ENSCVAP00000011571	CPSF_A	PF03178.15	2.2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000018626	-	4101	XM_015385445	ENSCVAP00000011609	1366 (aa)	XP_015240931	-
ENSCVAT00000018596	-	1161	-	ENSCVAP00000011586	386 (aa)	-	-
ENSCVAT00000018578	-	609	-	ENSCVAP00000011571	202 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000014059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000014059's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000014059	cpsf1	100	81.463	ENSG00000071894	CPSF1	100	81.463	Homo_sapiens
ENSCVAG00000014059	cpsf1	100	81.944	ENSAPOG00000019621	cpsf1	88	87.403	Acanthochromis_polyacanthus
ENSCVAG00000014059	cpsf1	100	67.130	ENSAMEG00000005557	CPSF1	88	75.659	Ailuropoda_melanoleuca
ENSCVAG00000014059	cpsf1	100	81.944	ENSACIG00000006112	cpsf1	85	85.903	Amphilophus_citrinellus
ENSCVAG00000014059	cpsf1	100	81.944	ENSAOCG00000007120	cpsf1	85	87.083	Amphiprion_ocellaris
ENSCVAG00000014059	cpsf1	100	81.944	ENSAPEG00000005755	cpsf1	85	87.895	Amphiprion_percula
ENSCVAG00000014059	cpsf1	100	81.944	ENSATEG00000011097	cpsf1	88	86.219	Anabas_testudineus
ENSCVAG00000014059	cpsf1	81	72.277	ENSACAG00000009655	CPSF1	84	72.277	Anolis_carolinensis
ENSCVAG00000014059	cpsf1	100	75.926	ENSANAG00000036514	CPSF1	85	77.241	Aotus_nancymaae
ENSCVAG00000014059	cpsf1	100	81.481	ENSACLG00000012231	cpsf1	88	85.751	Astatotilapia_calliptera
ENSCVAG00000014059	cpsf1	100	76.852	ENSAMXG00000008485	cpsf1	83	78.697	Astyanax_mexicanus
ENSCVAG00000014059	cpsf1	100	67.635	ENSBTAG00000008355	CPSF1	90	75.129	Bos_taurus
ENSCVAG00000014059	cpsf1	99	32.883	WBGene00022301	cpsf-1	99	40.678	Caenorhabditis_elegans
ENSCVAG00000014059	cpsf1	100	75.926	ENSCJAG00000021421	CPSF1	85	76.977	Callithrix_jacchus
ENSCVAG00000014059	cpsf1	100	75.463	ENSCAFG00000001600	CPSF1	100	77.708	Canis_familiaris
ENSCVAG00000014059	cpsf1	100	75.463	ENSCAFG00020020821	CPSF1	85	77.485	Canis_lupus_dingo
ENSCVAG00000014059	cpsf1	100	61.574	ENSCHIG00000015833	CPSF1	85	72.032	Capra_hircus
ENSCVAG00000014059	cpsf1	100	80.976	ENSTSYG00000028560	CPSF1	100	80.976	Carlito_syrichta
ENSCVAG00000014059	cpsf1	100	75.463	ENSCAPG00000014921	CPSF1	88	77.045	Cavia_aperea
ENSCVAG00000014059	cpsf1	100	75.463	ENSCPOG00000011448	CPSF1	86	77.045	Cavia_porcellus
ENSCVAG00000014059	cpsf1	100	80.488	ENSCCAG00000037658	CPSF1	100	80.488	Cebus_capucinus
ENSCVAG00000014059	cpsf1	100	81.463	ENSCATG00000037234	CPSF1	100	81.463	Cercocebus_atys
ENSCVAG00000014059	cpsf1	100	75.463	ENSCLAG00000012166	CPSF1	85	77.133	Chinchilla_lanigera
ENSCVAG00000014059	cpsf1	100	75.926	ENSCSAG00000008502	CPSF1	85	76.801	Chlorocebus_sabaeus
ENSCVAG00000014059	cpsf1	88	79.093	ENSCPBG00000018910	CPSF1	82	79.022	Chrysemys_picta_bellii
ENSCVAG00000014059	cpsf1	84	47.765	ENSCING00000000514	-	84	47.579	Ciona_intestinalis
ENSCVAG00000014059	cpsf1	99	46.948	ENSCSAVG00000002293	-	99	50.233	Ciona_savignyi
ENSCVAG00000014059	cpsf1	100	81.463	ENSCANG00000032760	CPSF1	100	81.463	Colobus_angolensis_palliatus
ENSCVAG00000014059	cpsf1	100	75.926	ENSCGRG00001016344	Cpsf1	85	76.869	Cricetulus_griseus_chok1gshd
ENSCVAG00000014059	cpsf1	100	75.926	ENSCGRG00000003118	Cpsf1	85	74.494	Cricetulus_griseus_crigri
ENSCVAG00000014059	cpsf1	100	79.167	ENSCSEG00000013464	cpsf1	92	84.170	Cynoglossus_semilaevis
ENSCVAG00000014059	cpsf1	100	77.778	ENSDARG00000034178	cpsf1	85	83.333	Danio_rerio
ENSCVAG00000014059	cpsf1	52	75.768	ENSDNOG00000043654	CPSF1	74	75.850	Dasypus_novemcinctus
ENSCVAG00000014059	cpsf1	100	75.463	ENSDORG00000006278	Cpsf1	87	76.693	Dipodomys_ordii
ENSCVAG00000014059	cpsf1	99	44.907	FBgn0024698	Cpsf160	90	41.659	Drosophila_melanogaster
ENSCVAG00000014059	cpsf1	68	79.195	ENSETEG00000006022	CPSF1	68	79.195	Echinops_telfairi
ENSCVAG00000014059	cpsf1	90	66.327	ENSEBUG00000006844	-	98	77.344	Eptatretus_burgeri
ENSCVAG00000014059	cpsf1	100	75.463	ENSEASG00005010774	CPSF1	85	77.221	Equus_asinus_asinus
ENSCVAG00000014059	cpsf1	100	75.463	ENSECAG00000022209	CPSF1	85	77.309	Equus_caballus
ENSCVAG00000014059	cpsf1	100	75.000	ENSEEUG00000000471	CPSF1	85	77.065	Erinaceus_europaeus
ENSCVAG00000014059	cpsf1	100	77.315	ENSELUG00000012271	cpsf1	90	81.459	Esox_lucius
ENSCVAG00000014059	cpsf1	100	75.463	ENSFDAG00000016060	CPSF1	85	77.133	Fukomys_damarensis
ENSCVAG00000014059	cpsf1	100	87.500	ENSFHEG00000016801	cpsf1	85	91.667	Fundulus_heteroclitus
ENSCVAG00000014059	cpsf1	100	80.093	ENSGMOG00000000796	cpsf1	85	82.955	Gadus_morhua
ENSCVAG00000014059	cpsf1	84	90.120	ENSGAFG00000018890	cpsf1	85	90.220	Gambusia_affinis
ENSCVAG00000014059	cpsf1	100	81.019	ENSGACG00000008703	cpsf1	100	83.300	Gasterosteus_aculeatus
ENSCVAG00000014059	cpsf1	89	75.832	ENSGAGG00000004276	CPSF1	87	79.896	Gopherus_agassizii
ENSCVAG00000014059	cpsf1	100	81.863	ENSGGOG00000016185	CPSF1	100	81.863	Gorilla_gorilla
ENSCVAG00000014059	cpsf1	100	53.922	ENSGGOG00000040487	-	100	61.111	Gorilla_gorilla
ENSCVAG00000014059	cpsf1	100	81.481	ENSHBUG00000018900	cpsf1	85	87.411	Haplochromis_burtoni
ENSCVAG00000014059	cpsf1	100	75.463	ENSHGLG00000016139	CPSF1	85	76.869	Heterocephalus_glaber_female
ENSCVAG00000014059	cpsf1	100	75.463	ENSHGLG00100009750	CPSF1	85	76.781	Heterocephalus_glaber_male
ENSCVAG00000014059	cpsf1	100	81.019	ENSHCOG00000018509	cpsf1	86	84.170	Hippocampus_comes
ENSCVAG00000014059	cpsf1	100	78.241	ENSIPUG00000011259	cpsf1	83	87.912	Ictalurus_punctatus
ENSCVAG00000014059	cpsf1	100	75.463	ENSSTOG00000009957	CPSF1	87	76.491	Ictidomys_tridecemlineatus
ENSCVAG00000014059	cpsf1	100	75.926	ENSJJAG00000023002	Cpsf1	86	76.957	Jaculus_jaculus
ENSCVAG00000014059	cpsf1	100	82.870	ENSKMAG00000001940	cpsf1	82	94.044	Kryptolebias_marmoratus
ENSCVAG00000014059	cpsf1	100	81.019	ENSLBEG00000003601	cpsf1	85	90.110	Labrus_bergylta
ENSCVAG00000014059	cpsf1	100	75.000	ENSLACG00000000233	CPSF1	86	67.785	Latimeria_chalumnae
ENSCVAG00000014059	cpsf1	100	77.523	ENSLOCG00000008484	cpsf1	83	80.234	Lepisosteus_oculatus
ENSCVAG00000014059	cpsf1	100	74.537	ENSLAFG00000022601	CPSF1	88	76.714	Loxodonta_africana
ENSCVAG00000014059	cpsf1	100	81.463	ENSMFAG00000037013	CPSF1	100	81.463	Macaca_fascicularis
ENSCVAG00000014059	cpsf1	100	81.463	ENSMMUG00000007380	CPSF1	100	81.463	Macaca_mulatta
ENSCVAG00000014059	cpsf1	100	81.463	ENSMNEG00000043564	CPSF1	100	81.463	Macaca_nemestrina
ENSCVAG00000014059	cpsf1	100	81.463	ENSMLEG00000043010	CPSF1	100	81.463	Mandrillus_leucophaeus
ENSCVAG00000014059	cpsf1	100	82.407	ENSMAMG00000003803	cpsf1	88	86.626	Mastacembelus_armatus
ENSCVAG00000014059	cpsf1	100	81.481	ENSMZEG00005001168	cpsf1	86	84.397	Maylandia_zebra
ENSCVAG00000014059	cpsf1	100	75.926	ENSMAUG00000003601	Cpsf1	85	76.781	Mesocricetus_auratus
ENSCVAG00000014059	cpsf1	100	75.463	ENSMICG00000015767	CPSF1	85	76.957	Microcebus_murinus
ENSCVAG00000014059	cpsf1	100	75.926	ENSMOCG00000022758	Cpsf1	85	76.781	Microtus_ochrogaster
ENSCVAG00000014059	cpsf1	100	83.333	ENSMMOG00000021245	cpsf1	85	87.809	Mola_mola
ENSCVAG00000014059	cpsf1	100	75.463	ENSMODG00000010755	CPSF1	85	77.592	Monodelphis_domestica
ENSCVAG00000014059	cpsf1	100	81.481	ENSMALG00000020545	cpsf1	86	86.085	Monopterus_albus
ENSCVAG00000014059	cpsf1	100	75.926	MGP_CAROLIEiJ_G0019936	Cpsf1	85	77.133	Mus_caroli
ENSCVAG00000014059	cpsf1	100	75.926	ENSMUSG00000034022	Cpsf1	85	77.133	Mus_musculus
ENSCVAG00000014059	cpsf1	100	75.926	MGP_PahariEiJ_G0019946	Cpsf1	85	77.221	Mus_pahari
ENSCVAG00000014059	cpsf1	100	75.926	MGP_SPRETEiJ_G0020839	Cpsf1	85	77.133	Mus_spretus
ENSCVAG00000014059	cpsf1	93	73.267	ENSMPUG00000006419	CPSF1	84	77.115	Mustela_putorius_furo
ENSCVAG00000014059	cpsf1	78	79.747	ENSMLUG00000000667	-	100	80.000	Myotis_lucifugus
ENSCVAG00000014059	cpsf1	100	75.926	ENSNGAG00000022460	Cpsf1	85	76.869	Nannospalax_galili
ENSCVAG00000014059	cpsf1	100	81.481	ENSNBRG00000000813	cpsf1	84	89.247	Neolamprologus_brichardi
ENSCVAG00000014059	cpsf1	100	81.463	ENSNLEG00000010633	-	100	81.463	Nomascus_leucogenys
ENSCVAG00000014059	cpsf1	85	81.395	ENSMEUG00000014922	CPSF1	73	81.395	Notamacropus_eugenii
ENSCVAG00000014059	cpsf1	55	87.895	ENSOPRG00000004693	-	62	87.895	Ochotona_princeps
ENSCVAG00000014059	cpsf1	100	75.463	ENSODEG00000013995	CPSF1	85	77.045	Octodon_degus
ENSCVAG00000014059	cpsf1	100	81.019	ENSONIG00000007676	cpsf1	85	87.159	Oreochromis_niloticus
ENSCVAG00000014059	cpsf1	54	77.143	ENSOANG00000010716	CPSF1	79	77.143	Ornithorhynchus_anatinus
ENSCVAG00000014059	cpsf1	100	83.333	ENSORLG00000013544	cpsf1	92	95.885	Oryzias_latipes
ENSCVAG00000014059	cpsf1	100	83.333	ENSORLG00020021693	cpsf1	92	95.885	Oryzias_latipes_hni
ENSCVAG00000014059	cpsf1	100	83.333	ENSORLG00015009979	cpsf1	86	88.042	Oryzias_latipes_hsok
ENSCVAG00000014059	cpsf1	100	82.407	ENSOMEG00000011849	cpsf1	85	86.753	Oryzias_melastigma
ENSCVAG00000014059	cpsf1	100	75.463	ENSOGAG00000000315	CPSF1	85	77.153	Otolemur_garnettii
ENSCVAG00000014059	cpsf1	100	81.951	ENSPPAG00000019280	CPSF1	100	81.951	Pan_paniscus
ENSCVAG00000014059	cpsf1	100	81.951	ENSPTRG00000049288	-	100	81.951	Pan_troglodytes
ENSCVAG00000014059	cpsf1	100	53.431	ENSPTRG00000052516	-	100	60.185	Pan_troglodytes
ENSCVAG00000014059	cpsf1	100	81.951	ENSPTRG00000051253	-	100	81.951	Pan_troglodytes
ENSCVAG00000014059	cpsf1	100	80.976	ENSPANG00000015005	CPSF1	100	80.976	Papio_anubis
ENSCVAG00000014059	cpsf1	100	79.167	ENSPKIG00000002582	cpsf1	93	87.097	Paramormyrops_kingsleyae
ENSCVAG00000014059	cpsf1	100	80.093	ENSPMGG00000022177	-	100	87.037	Periophthalmus_magnuspinnatus
ENSCVAG00000014059	cpsf1	100	75.463	ENSPCIG00000009035	CPSF1	85	77.768	Phascolarctos_cinereus
ENSCVAG00000014059	cpsf1	100	86.574	ENSPFOG00000012870	cpsf1	86	91.098	Poecilia_formosa
ENSCVAG00000014059	cpsf1	100	86.111	ENSPREG00000016307	cpsf1	86	90.933	Poecilia_reticulata
ENSCVAG00000014059	cpsf1	100	73.148	ENSPPYG00000018973	CPSF1	91	69.702	Pongo_abelii
ENSCVAG00000014059	cpsf1	100	71.296	ENSPCAG00000011541	CPSF1	82	82.670	Procavia_capensis
ENSCVAG00000014059	cpsf1	100	79.803	ENSPCOG00000020001	CPSF1	100	79.803	Propithecus_coquereli
ENSCVAG00000014059	cpsf1	96	74.879	ENSPVAG00000006761	CPSF1	76	84.857	Pteropus_vampyrus
ENSCVAG00000014059	cpsf1	100	81.481	ENSPNYG00000004906	cpsf1	88	85.838	Pundamilia_nyererei
ENSCVAG00000014059	cpsf1	89	82.178	ENSPNAG00000024395	cpsf1	85	82.178	Pygocentrus_nattereri
ENSCVAG00000014059	cpsf1	100	75.926	ENSRNOG00000030705	Cpsf1	85	77.004	Rattus_norvegicus
ENSCVAG00000014059	cpsf1	100	81.463	ENSRBIG00000044907	CPSF1	100	81.463	Rhinopithecus_bieti
ENSCVAG00000014059	cpsf1	100	81.463	ENSRROG00000044861	CPSF1	100	81.463	Rhinopithecus_roxellana
ENSCVAG00000014059	cpsf1	100	75.926	ENSSBOG00000027177	CPSF1	88	77.153	Saimiri_boliviensis_boliviensis
ENSCVAG00000014059	cpsf1	100	75.000	ENSSHAG00000006500	CPSF1	85	77.856	Sarcophilus_harrisii
ENSCVAG00000014059	cpsf1	100	79.167	ENSSFOG00015004606	cpsf1	90	83.115	Scleropages_formosus
ENSCVAG00000014059	cpsf1	100	82.407	ENSSMAG00000020547	cpsf1	86	85.998	Scophthalmus_maximus
ENSCVAG00000014059	cpsf1	100	81.481	ENSSDUG00000001100	cpsf1	85	88.455	Seriola_dumerili
ENSCVAG00000014059	cpsf1	100	81.481	ENSSLDG00000003619	cpsf1	85	88.209	Seriola_lalandi_dorsalis
ENSCVAG00000014059	cpsf1	83	73.352	ENSSARG00000003643	CPSF1	82	73.168	Sorex_araneus
ENSCVAG00000014059	cpsf1	100	78.049	ENSSPUG00000014396	CPSF1	100	78.049	Sphenodon_punctatus
ENSCVAG00000014059	cpsf1	100	81.944	ENSSPAG00000005349	cpsf1	86	87.047	Stegastes_partitus
ENSCVAG00000014059	cpsf1	100	75.926	ENSSSCG00000005906	CPSF1	87	76.696	Sus_scrofa
ENSCVAG00000014059	cpsf1	100	78.241	ENSTRUG00000013134	cpsf1	89	85.383	Takifugu_rubripes
ENSCVAG00000014059	cpsf1	100	77.982	ENSTNIG00000014027	cpsf1	85	85.727	Tetraodon_nigroviridis
ENSCVAG00000014059	cpsf1	65	73.818	ENSTBEG00000001756	CPSF1	76	72.101	Tupaia_belangeri
ENSCVAG00000014059	cpsf1	100	75.000	ENSTTRG00000001937	CPSF1	74	82.087	Tursiops_truncatus
ENSCVAG00000014059	cpsf1	100	75.463	ENSUAMG00000006476	CPSF1	86	77.309	Ursus_americanus
ENSCVAG00000014059	cpsf1	100	80.198	ENSVVUG00000005940	-	100	80.198	Vulpes_vulpes
ENSCVAG00000014059	cpsf1	100	86.111	ENSXCOG00000003608	cpsf1	85	92.990	Xiphophorus_couchianus
ENSCVAG00000014059	cpsf1	100	86.574	ENSXMAG00000005798	cpsf1	85	92.246	Xiphophorus_maculatus