EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000014267 (Gene tree)
Gene ID: 107103550
Gene Symbol: polr2j
Alias: rpb11|zgc:110005
Full Name: RNA polymerase II subunit J
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 3333 bases
Position: chrKL653976.1:98978-102310
Accession: 107103550
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000011913	RNA_pol_L_2	PF13656.6	3.7e-29	1	1
ENSCVAP00000011913	RNA_pol_L	PF01193.24	1.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000030120	-	735	XM_015403285	ENSCVAP00000011913	117 (aa)	XP_015258771	UPI0007424E5D

Gene Model

Click here to download ENSCVAG00000014267's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000014267's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000014267	polr2j	76	34.444	ENSCVAG00000018527	polr1d	79	34.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000014267	polr2j	99	87.179	ENSG00000228049	POLR2J2	94	89.908	Homo_sapiens
ENSCVAG00000014267	polr2j	100	94.017	ENSG00000005075	POLR2J	100	94.017	Homo_sapiens
ENSCVAG00000014267	polr2j	100	99.145	ENSAPOG00000019538	polr2j	100	99.145	Acanthochromis_polyacanthus
ENSCVAG00000014267	polr2j	100	86.614	ENSAMEG00000015480	-	100	86.614	Ailuropoda_melanoleuca
ENSCVAG00000014267	polr2j	93	77.273	ENSACIG00000014549	POLR2J2	91	77.273	Amphilophus_citrinellus
ENSCVAG00000014267	polr2j	100	98.291	ENSAOCG00000006937	polr2j	100	98.291	Amphiprion_ocellaris
ENSCVAG00000014267	polr2j	100	99.145	ENSAPEG00000021761	polr2j	100	99.145	Amphiprion_percula
ENSCVAG00000014267	polr2j	100	99.145	ENSATEG00000013312	-	100	99.145	Anabas_testudineus
ENSCVAG00000014267	polr2j	100	99.145	ENSATEG00000009731	polr2j	100	99.145	Anabas_testudineus
ENSCVAG00000014267	polr2j	86	91.089	ENSAPLG00000003744	-	100	91.089	Anas_platyrhynchos
ENSCVAG00000014267	polr2j	100	86.325	ENSACAG00000000251	POLR2J	100	86.325	Anolis_carolinensis
ENSCVAG00000014267	polr2j	100	99.145	ENSACLG00000014564	polr2j	100	99.145	Astatotilapia_calliptera
ENSCVAG00000014267	polr2j	100	96.581	ENSAMXG00000007517	polr2j	100	96.581	Astyanax_mexicanus
ENSCVAG00000014267	polr2j	62	63.014	ENSBTAG00000048046	-	61	63.014	Bos_taurus
ENSCVAG00000014267	polr2j	94	68.182	WBGene00012187	rpb-11	89	68.182	Caenorhabditis_elegans
ENSCVAG00000014267	polr2j	100	94.017	ENSCJAG00000016203	-	100	94.017	Callithrix_jacchus
ENSCVAG00000014267	polr2j	100	94.017	ENSCAFG00000013683	-	100	94.017	Canis_familiaris
ENSCVAG00000014267	polr2j	85	92.929	ENSTSYG00000029243	-	85	92.929	Carlito_syrichta
ENSCVAG00000014267	polr2j	100	94.017	ENSCPOG00000001401	-	100	94.017	Cavia_porcellus
ENSCVAG00000014267	polr2j	100	72.650	ENSCATG00000016595	-	96	83.516	Cercocebus_atys
ENSCVAG00000014267	polr2j	100	94.017	ENSCLAG00000005238	-	100	94.017	Chinchilla_lanigera
ENSCVAG00000014267	polr2j	100	94.017	ENSCSAG00000018092	-	100	94.017	Chlorocebus_sabaeus
ENSCVAG00000014267	polr2j	100	82.051	ENSCING00000020531	-	100	82.051	Ciona_intestinalis
ENSCVAG00000014267	polr2j	100	80.342	ENSCSAVG00000006948	-	100	80.342	Ciona_savignyi
ENSCVAG00000014267	polr2j	100	94.017	ENSCGRG00001012814	Polr2j	100	94.017	Cricetulus_griseus_chok1gshd
ENSCVAG00000014267	polr2j	100	79.487	ENSCGRG00000008433	Polr2j	100	79.487	Cricetulus_griseus_crigri
ENSCVAG00000014267	polr2j	100	96.581	ENSCSEG00000020352	polr2j	100	96.581	Cynoglossus_semilaevis
ENSCVAG00000014267	polr2j	100	95.726	ENSDARG00000035146	polr2j	100	95.726	Danio_rerio
ENSCVAG00000014267	polr2j	100	94.017	ENSDORG00000005934	Polr2j	100	94.017	Dipodomys_ordii
ENSCVAG00000014267	polr2j	98	78.261	FBgn0032634	Rpb11	98	78.261	Drosophila_melanogaster
ENSCVAG00000014267	polr2j	100	64.103	ENSEBUG00000016100	polr2j	100	64.103	Eptatretus_burgeri
ENSCVAG00000014267	polr2j	100	94.017	ENSEASG00005016864	-	100	94.017	Equus_asinus_asinus
ENSCVAG00000014267	polr2j	100	96.581	ENSELUG00000012822	polr2j	100	96.581	Esox_lucius
ENSCVAG00000014267	polr2j	100	94.017	ENSFCAG00000000377	-	100	94.017	Felis_catus
ENSCVAG00000014267	polr2j	100	94.017	ENSFALG00000009523	POLR2J	100	94.017	Ficedula_albicollis
ENSCVAG00000014267	polr2j	100	94.017	ENSFDAG00000010507	-	100	94.017	Fukomys_damarensis
ENSCVAG00000014267	polr2j	100	99.145	ENSFHEG00000006625	polr2j	100	99.145	Fundulus_heteroclitus
ENSCVAG00000014267	polr2j	100	96.581	ENSGMOG00000018207	polr2j	100	96.581	Gadus_morhua
ENSCVAG00000014267	polr2j	100	94.017	ENSGALG00000030808	-	100	94.017	Gallus_gallus
ENSCVAG00000014267	polr2j	100	99.145	ENSGAFG00000019555	polr2j	100	99.145	Gambusia_affinis
ENSCVAG00000014267	polr2j	100	99.145	ENSGACG00000003310	polr2j	100	99.145	Gasterosteus_aculeatus
ENSCVAG00000014267	polr2j	97	84.071	ENSGAGG00000018304	-	96	84.071	Gopherus_agassizii
ENSCVAG00000014267	polr2j	85	88.000	ENSGGOG00000004519	-	80	88.000	Gorilla_gorilla
ENSCVAG00000014267	polr2j	100	99.145	ENSHBUG00000008467	polr2j	100	99.145	Haplochromis_burtoni
ENSCVAG00000014267	polr2j	100	94.017	ENSHGLG00000013598	POLR2J	100	94.017	Heterocephalus_glaber_female
ENSCVAG00000014267	polr2j	100	94.017	ENSHGLG00100011242	POLR2J	100	94.017	Heterocephalus_glaber_male
ENSCVAG00000014267	polr2j	100	96.581	ENSHCOG00000014827	polr2j	68	96.581	Hippocampus_comes
ENSCVAG00000014267	polr2j	100	96.581	ENSIPUG00000023960	polr2j	100	96.581	Ictalurus_punctatus
ENSCVAG00000014267	polr2j	100	94.017	ENSSTOG00000006377	POLR2J	100	94.017	Ictidomys_tridecemlineatus
ENSCVAG00000014267	polr2j	100	88.889	ENSJJAG00000018834	-	100	88.889	Jaculus_jaculus
ENSCVAG00000014267	polr2j	100	94.017	ENSJJAG00000013854	-	100	94.017	Jaculus_jaculus
ENSCVAG00000014267	polr2j	100	99.145	ENSKMAG00000014581	polr2j	79	99.145	Kryptolebias_marmoratus
ENSCVAG00000014267	polr2j	100	98.291	ENSLBEG00000005885	polr2j	100	98.291	Labrus_bergylta
ENSCVAG00000014267	polr2j	100	96.581	ENSLOCG00000001885	polr2j	89	96.581	Lepisosteus_oculatus
ENSCVAG00000014267	polr2j	100	94.017	ENSLAFG00000021507	-	100	94.017	Loxodonta_africana
ENSCVAG00000014267	polr2j	100	84.615	ENSMMUG00000012019	POLR2J	100	84.615	Macaca_mulatta
ENSCVAG00000014267	polr2j	100	98.291	ENSMAMG00000009374	polr2j	100	98.291	Mastacembelus_armatus
ENSCVAG00000014267	polr2j	100	99.145	ENSMZEG00005011932	polr2j	100	99.145	Maylandia_zebra
ENSCVAG00000014267	polr2j	100	94.017	ENSMGAG00000003534	POLR2J	100	94.017	Meleagris_gallopavo
ENSCVAG00000014267	polr2j	100	94.017	ENSMAUG00000013049	Polr2j	100	94.017	Mesocricetus_auratus
ENSCVAG00000014267	polr2j	80	89.362	ENSMICG00000026811	-	94	89.362	Microcebus_murinus
ENSCVAG00000014267	polr2j	100	94.017	ENSMOCG00000001294	Polr2j	100	94.017	Microtus_ochrogaster
ENSCVAG00000014267	polr2j	100	97.436	ENSMMOG00000013265	polr2j	100	97.436	Mola_mola
ENSCVAG00000014267	polr2j	100	85.938	ENSMODG00000013617	-	100	85.938	Monodelphis_domestica
ENSCVAG00000014267	polr2j	100	98.291	ENSMALG00000020749	polr2j	100	98.291	Monopterus_albus
ENSCVAG00000014267	polr2j	100	94.017	MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	Mus_caroli
ENSCVAG00000014267	polr2j	100	94.017	ENSMUSG00000039771	Polr2j	100	94.017	Mus_musculus
ENSCVAG00000014267	polr2j	100	94.017	MGP_PahariEiJ_G0024434	Polr2j	100	94.017	Mus_pahari
ENSCVAG00000014267	polr2j	100	94.017	MGP_SPRETEiJ_G0028853	Polr2j	100	94.017	Mus_spretus
ENSCVAG00000014267	polr2j	100	94.017	ENSMLUG00000010467	POLR2J	100	94.017	Myotis_lucifugus
ENSCVAG00000014267	polr2j	100	94.017	ENSNGAG00000023412	Polr2j	100	94.017	Nannospalax_galili
ENSCVAG00000014267	polr2j	66	97.403	ENSNBRG00000006580	polr2j	59	97.403	Neolamprologus_brichardi
ENSCVAG00000014267	polr2j	100	72.650	ENSODEG00000008559	-	100	72.650	Octodon_degus
ENSCVAG00000014267	polr2j	100	94.017	ENSODEG00000015648	-	100	94.017	Octodon_degus
ENSCVAG00000014267	polr2j	100	99.145	ENSONIG00000000259	polr2j	100	99.145	Oreochromis_niloticus
ENSCVAG00000014267	polr2j	100	91.453	ENSOANG00000020912	POLR2J	100	91.453	Ornithorhynchus_anatinus
ENSCVAG00000014267	polr2j	100	86.614	ENSOCUG00000023609	POLR2J	100	86.614	Oryctolagus_cuniculus
ENSCVAG00000014267	polr2j	100	99.145	ENSORLG00000029046	polr2j	83	99.145	Oryzias_latipes
ENSCVAG00000014267	polr2j	100	99.145	ENSORLG00020007625	polr2j	83	99.145	Oryzias_latipes_hni
ENSCVAG00000014267	polr2j	100	99.145	ENSORLG00015003457	polr2j	83	99.145	Oryzias_latipes_hsok
ENSCVAG00000014267	polr2j	100	98.291	ENSOMEG00000002097	polr2j	100	98.291	Oryzias_melastigma
ENSCVAG00000014267	polr2j	100	71.094	ENSOGAG00000008250	-	100	71.094	Otolemur_garnettii
ENSCVAG00000014267	polr2j	100	94.017	ENSOARG00000014204	-	98	94.017	Ovis_aries
ENSCVAG00000014267	polr2j	100	94.017	ENSPPRG00000012439	-	100	94.017	Panthera_pardus
ENSCVAG00000014267	polr2j	97	85.088	ENSPTIG00000018714	-	100	90.291	Panthera_tigris_altaica
ENSCVAG00000014267	polr2j	85	92.000	ENSPSIG00000010173	-	100	92.000	Pelodiscus_sinensis
ENSCVAG00000014267	polr2j	100	99.145	ENSPMGG00000021256	polr2j	100	99.145	Periophthalmus_magnuspinnatus
ENSCVAG00000014267	polr2j	100	94.017	ENSPEMG00000015733	Polr2j	100	94.017	Peromyscus_maniculatus_bairdii
ENSCVAG00000014267	polr2j	100	94.017	ENSPCIG00000009026	-	100	94.017	Phascolarctos_cinereus
ENSCVAG00000014267	polr2j	100	99.145	ENSPFOG00000012001	polr2j	99	99.145	Poecilia_formosa
ENSCVAG00000014267	polr2j	100	99.145	ENSPLAG00000014075	polr2j	100	99.145	Poecilia_latipinna
ENSCVAG00000014267	polr2j	100	99.145	ENSPMEG00000020585	polr2j	100	99.145	Poecilia_mexicana
ENSCVAG00000014267	polr2j	100	99.145	ENSPREG00000015255	polr2j	100	99.145	Poecilia_reticulata
ENSCVAG00000014267	polr2j	100	94.017	ENSPCOG00000024573	-	100	94.017	Propithecus_coquereli
ENSCVAG00000014267	polr2j	99	87.931	ENSPVAG00000017770	-	66	87.931	Pteropus_vampyrus
ENSCVAG00000014267	polr2j	100	99.145	ENSPNYG00000014832	polr2j	100	99.145	Pundamilia_nyererei
ENSCVAG00000014267	polr2j	100	94.017	ENSPNAG00000016595	polr2j	100	94.017	Pygocentrus_nattereri
ENSCVAG00000014267	polr2j	100	94.017	ENSRNOG00000001430	Polr2j	100	94.017	Rattus_norvegicus
ENSCVAG00000014267	polr2j	100	94.017	ENSSBOG00000025579	-	100	94.017	Saimiri_boliviensis_boliviensis
ENSCVAG00000014267	polr2j	59	97.101	ENSSHAG00000010443	-	81	97.101	Sarcophilus_harrisii
ENSCVAG00000014267	polr2j	93	95.413	ENSSFOG00015003371	polr2j	83	95.413	Scleropages_formosus
ENSCVAG00000014267	polr2j	100	99.145	ENSSMAG00000006729	polr2j	100	99.145	Scophthalmus_maximus
ENSCVAG00000014267	polr2j	100	99.145	ENSSDUG00000018490	polr2j	100	99.145	Seriola_dumerili
ENSCVAG00000014267	polr2j	100	99.145	ENSSLDG00000022354	polr2j	100	99.145	Seriola_lalandi_dorsalis
ENSCVAG00000014267	polr2j	100	94.017	ENSSPUG00000010802	-	100	94.017	Sphenodon_punctatus
ENSCVAG00000014267	polr2j	100	99.145	ENSSPAG00000021953	polr2j	100	99.145	Stegastes_partitus
ENSCVAG00000014267	polr2j	100	77.778	ENSSSCG00000003703	-	83	77.778	Sus_scrofa
ENSCVAG00000014267	polr2j	100	94.017	ENSSSCG00000007688	-	100	94.017	Sus_scrofa
ENSCVAG00000014267	polr2j	59	97.101	ENSTGUG00000004510	-	100	97.101	Taeniopygia_guttata
ENSCVAG00000014267	polr2j	85	92.000	ENSTGUG00000004501	-	100	92.000	Taeniopygia_guttata
ENSCVAG00000014267	polr2j	100	98.291	ENSTRUG00000020842	polr2j	100	98.291	Takifugu_rubripes
ENSCVAG00000014267	polr2j	100	97.436	ENSTNIG00000002994	polr2j	100	97.436	Tetraodon_nigroviridis
ENSCVAG00000014267	polr2j	91	79.439	ENSTBEG00000005797	-	70	79.439	Tupaia_belangeri
ENSCVAG00000014267	polr2j	100	94.017	ENSUAMG00000011310	-	100	94.017	Ursus_americanus
ENSCVAG00000014267	polr2j	100	94.017	ENSUMAG00000012594	-	100	94.017	Ursus_maritimus
ENSCVAG00000014267	polr2j	100	93.162	ENSXETG00000001108	polr2j	100	93.162	Xenopus_tropicalis
ENSCVAG00000014267	polr2j	100	99.145	ENSXMAG00000012422	polr2j	100	99.145	Xiphophorus_maculatus