EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000014848 (Gene tree)
Gene ID: 107097054
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 13918 bases
Position: chrKL653167.1:202838-216755
Accession: 107097054
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000028050	RNA_bind	PF08675.11	1.5e-33	1	1
ENSCVAP00000028050	CAF1	PF04857.20	3.1e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000030325	-	3243	XM_015394028	ENSCVAP00000028050	679 (aa)	XP_015249514	UPI0007429587

Gene Model

Click here to download ENSCVAG00000014848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000014848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000014848	parn	83	73.630	ENSG00000140694	PARN	99	70.035	Homo_sapiens
ENSCVAG00000014848	parn	79	77.654	ENSAMEG00000011208	PARN	83	77.654	Ailuropoda_melanoleuca
ENSCVAG00000014848	parn	86	79.278	ENSACIG00000000619	parn	99	79.592	Amphilophus_citrinellus
ENSCVAG00000014848	parn	100	84.593	ENSAOCG00000003465	parn	100	84.593	Amphiprion_ocellaris
ENSCVAG00000014848	parn	73	88.956	ENSAPEG00000010661	parn	95	88.956	Amphiprion_percula
ENSCVAG00000014848	parn	100	84.964	ENSATEG00000004661	parn	100	85.547	Anabas_testudineus
ENSCVAG00000014848	parn	82	72.318	ENSAPLG00000013914	PARN	90	72.664	Anas_platyrhynchos
ENSCVAG00000014848	parn	83	72.959	ENSACAG00000004973	PARN	90	72.959	Anolis_carolinensis
ENSCVAG00000014848	parn	83	73.630	ENSANAG00000031516	PARN	91	77.966	Aotus_nancymaae
ENSCVAG00000014848	parn	100	84.649	ENSACLG00000004742	parn	100	85.380	Astatotilapia_calliptera
ENSCVAG00000014848	parn	100	70.408	ENSAMXG00000012390	parn	97	73.754	Astyanax_mexicanus
ENSCVAG00000014848	parn	83	70.598	ENSBTAG00000018097	PARN	90	72.901	Bos_taurus
ENSCVAG00000014848	parn	83	73.801	ENSCJAG00000015866	PARN	91	77.966	Callithrix_jacchus
ENSCVAG00000014848	parn	79	77.239	ENSCAFG00000018795	PARN	83	77.239	Canis_familiaris
ENSCVAG00000014848	parn	79	77.239	ENSCAFG00020024126	PARN	83	77.239	Canis_lupus_dingo
ENSCVAG00000014848	parn	83	72.991	ENSCHIG00000018143	PARN	91	72.991	Capra_hircus
ENSCVAG00000014848	parn	69	50.728	ENSCAPG00000007984	PARN	78	50.728	Cavia_aperea
ENSCVAG00000014848	parn	83	72.945	ENSCPOG00000002263	PARN	91	72.945	Cavia_porcellus
ENSCVAG00000014848	parn	83	73.630	ENSCCAG00000030367	PARN	91	77.966	Cebus_capucinus
ENSCVAG00000014848	parn	79	77.612	ENSCATG00000041368	PARN	95	77.612	Cercocebus_atys
ENSCVAG00000014848	parn	79	77.985	ENSCLAG00000015406	PARN	83	77.985	Chinchilla_lanigera
ENSCVAG00000014848	parn	83	73.630	ENSCSAG00000008142	PARN	91	73.630	Chlorocebus_sabaeus
ENSCVAG00000014848	parn	82	57.019	ENSCHOG00000007014	PARN	90	57.019	Choloepus_hoffmanni
ENSCVAG00000014848	parn	74	71.917	ENSCPBG00000006609	PARN	89	71.917	Chrysemys_picta_bellii
ENSCVAG00000014848	parn	75	41.651	ENSCING00000010142	-	99	41.651	Ciona_intestinalis
ENSCVAG00000014848	parn	83	62.814	ENSCANG00000028849	-	87	77.966	Colobus_angolensis_palliatus
ENSCVAG00000014848	parn	83	72.790	ENSCGRG00001012096	Parn	91	72.790	Cricetulus_griseus_chok1gshd
ENSCVAG00000014848	parn	83	72.790	ENSCGRG00000004939	Parn	91	72.790	Cricetulus_griseus_crigri
ENSCVAG00000014848	parn	100	80.640	ENSCSEG00000002064	parn	100	80.640	Cynoglossus_semilaevis
ENSCVAG00000014848	parn	100	67.681	ENSDARG00000102634	parn	100	67.681	Danio_rerio
ENSCVAG00000014848	parn	79	77.985	ENSDNOG00000000833	PARN	94	77.985	Dasypus_novemcinctus
ENSCVAG00000014848	parn	62	75.000	ENSETEG00000014828	-	69	75.000	Echinops_telfairi
ENSCVAG00000014848	parn	83	72.867	ENSEASG00005011400	PARN	91	72.867	Equus_asinus_asinus
ENSCVAG00000014848	parn	83	72.696	ENSECAG00000017792	PARN	91	72.696	Equus_caballus
ENSCVAG00000014848	parn	61	82.692	ENSEEUG00000010370	PARN	68	82.692	Erinaceus_europaeus
ENSCVAG00000014848	parn	100	73.585	ENSELUG00000013139	parn	90	74.348	Esox_lucius
ENSCVAG00000014848	parn	79	77.985	ENSFCAG00000044961	PARN	83	77.985	Felis_catus
ENSCVAG00000014848	parn	83	71.331	ENSFALG00000003911	PARN	98	64.540	Ficedula_albicollis
ENSCVAG00000014848	parn	79	77.425	ENSFDAG00000009234	PARN	89	73.097	Fukomys_damarensis
ENSCVAG00000014848	parn	87	85.354	ENSFHEG00000013738	parn	92	96.610	Fundulus_heteroclitus
ENSCVAG00000014848	parn	81	84.278	ENSGMOG00000003231	parn	99	84.278	Gadus_morhua
ENSCVAG00000014848	parn	100	64.192	ENSGALG00000003091	PARN	94	72.194	Gallus_gallus
ENSCVAG00000014848	parn	100	90.365	ENSGAFG00000011061	parn	100	90.073	Gambusia_affinis
ENSCVAG00000014848	parn	100	73.149	ENSGACG00000019501	parn	100	74.165	Gasterosteus_aculeatus
ENSCVAG00000014848	parn	83	73.630	ENSGGOG00000025224	PARN	91	77.966	Gorilla_gorilla
ENSCVAG00000014848	parn	100	85.380	ENSHBUG00000017906	parn	100	85.673	Haplochromis_burtoni
ENSCVAG00000014848	parn	79	77.612	ENSHGLG00000010886	PARN	83	77.612	Heterocephalus_glaber_female
ENSCVAG00000014848	parn	79	77.612	ENSHGLG00100014659	PARN	83	77.612	Heterocephalus_glaber_male
ENSCVAG00000014848	parn	80	81.455	ENSHCOG00000008683	parn	95	81.455	Hippocampus_comes
ENSCVAG00000014848	parn	100	59.334	ENSIPUG00000012401	parn	100	59.538	Ictalurus_punctatus
ENSCVAG00000014848	parn	83	72.821	ENSSTOG00000007519	PARN	91	72.821	Ictidomys_tridecemlineatus
ENSCVAG00000014848	parn	83	72.964	ENSJJAG00000023049	Parn	91	72.964	Jaculus_jaculus
ENSCVAG00000014848	parn	100	88.824	ENSKMAG00000009462	parn	100	88.824	Kryptolebias_marmoratus
ENSCVAG00000014848	parn	93	84.094	ENSLBEG00000009167	parn	99	84.094	Labrus_bergylta
ENSCVAG00000014848	parn	74	74.405	ENSLACG00000004207	PARN	100	73.349	Latimeria_chalumnae
ENSCVAG00000014848	parn	100	69.440	ENSLOCG00000000715	parn	100	68.892	Lepisosteus_oculatus
ENSCVAG00000014848	parn	79	77.425	ENSLAFG00000015036	PARN	84	77.425	Loxodonta_africana
ENSCVAG00000014848	parn	83	70.205	ENSMFAG00000044852	PARN	87	77.966	Macaca_fascicularis
ENSCVAG00000014848	parn	83	73.630	ENSMMUG00000018849	PARN	87	77.966	Macaca_mulatta
ENSCVAG00000014848	parn	83	73.630	ENSMNEG00000045108	PARN	87	77.966	Macaca_nemestrina
ENSCVAG00000014848	parn	83	73.459	ENSMLEG00000031743	PARN	87	77.966	Mandrillus_leucophaeus
ENSCVAG00000014848	parn	100	84.571	ENSMAMG00000006939	parn	100	84.571	Mastacembelus_armatus
ENSCVAG00000014848	parn	100	84.795	ENSMZEG00005013590	parn	100	85.526	Maylandia_zebra
ENSCVAG00000014848	parn	83	69.374	ENSMGAG00000001004	PARN	96	67.480	Meleagris_gallopavo
ENSCVAG00000014848	parn	83	67.065	ENSMAUG00000008025	Parn	90	67.065	Mesocricetus_auratus
ENSCVAG00000014848	parn	83	73.116	ENSMICG00000016053	PARN	91	76.271	Microcebus_murinus
ENSCVAG00000014848	parn	73	78.340	ENSMOCG00000022211	Parn	100	78.340	Microtus_ochrogaster
ENSCVAG00000014848	parn	81	86.076	ENSMMOG00000011333	parn	90	86.076	Mola_mola
ENSCVAG00000014848	parn	73	80.684	ENSMODG00000004915	PARN	99	80.684	Monodelphis_domestica
ENSCVAG00000014848	parn	96	84.627	ENSMALG00000019426	parn	94	88.448	Monopterus_albus
ENSCVAG00000014848	parn	82	73.050	MGP_CAROLIEiJ_G0020466	Parn	89	73.050	Mus_caroli
ENSCVAG00000014848	parn	82	72.711	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSCVAG00000014848	parn	79	74.816	MGP_PahariEiJ_G0016172	Parn	85	74.816	Mus_pahari
ENSCVAG00000014848	parn	82	72.711	MGP_SPRETEiJ_G0021361	Parn	89	72.711	Mus_spretus
ENSCVAG00000014848	parn	79	77.612	ENSMPUG00000014464	PARN	83	77.612	Mustela_putorius_furo
ENSCVAG00000014848	parn	72	77.980	ENSMLUG00000005414	PARN	100	77.980	Myotis_lucifugus
ENSCVAG00000014848	parn	81	87.500	ENSNBRG00000006805	parn	93	87.862	Neolamprologus_brichardi
ENSCVAG00000014848	parn	84	73.051	ENSNLEG00000010241	PARN	91	77.966	Nomascus_leucogenys
ENSCVAG00000014848	parn	78	54.924	ENSMEUG00000008178	-	83	54.924	Notamacropus_eugenii
ENSCVAG00000014848	parn	82	67.882	ENSOPRG00000012187	PARN	91	67.882	Ochotona_princeps
ENSCVAG00000014848	parn	79	71.243	ENSODEG00000001617	PARN	85	71.243	Octodon_degus
ENSCVAG00000014848	parn	100	85.380	ENSONIG00000000151	parn	100	85.673	Oreochromis_niloticus
ENSCVAG00000014848	parn	82	72.931	ENSOCUG00000000322	PARN	91	72.931	Oryctolagus_cuniculus
ENSCVAG00000014848	parn	100	83.994	ENSORLG00020010313	parn	100	84.288	Oryzias_latipes_hni
ENSCVAG00000014848	parn	100	83.847	ENSORLG00015000300	parn	100	84.141	Oryzias_latipes_hsok
ENSCVAG00000014848	parn	100	83.138	ENSOMEG00000019555	parn	100	83.138	Oryzias_melastigma
ENSCVAG00000014848	parn	72	77.419	ENSOGAG00000014626	PARN	100	77.419	Otolemur_garnettii
ENSCVAG00000014848	parn	72	79.394	ENSOARG00000007574	PARN	100	79.394	Ovis_aries
ENSCVAG00000014848	parn	83	73.630	ENSPPAG00000031438	PARN	91	77.966	Pan_paniscus
ENSCVAG00000014848	parn	79	77.985	ENSPPRG00000018583	PARN	83	77.985	Panthera_pardus
ENSCVAG00000014848	parn	79	77.985	ENSPTIG00000012135	PARN	83	77.985	Panthera_tigris_altaica
ENSCVAG00000014848	parn	83	73.459	ENSPTRG00000007792	PARN	91	77.966	Pan_troglodytes
ENSCVAG00000014848	parn	83	71.404	ENSPANG00000020099	PARN	87	77.966	Papio_anubis
ENSCVAG00000014848	parn	99	68.848	ENSPKIG00000022807	parn	92	73.129	Paramormyrops_kingsleyae
ENSCVAG00000014848	parn	82	72.945	ENSPSIG00000014804	PARN	90	72.945	Pelodiscus_sinensis
ENSCVAG00000014848	parn	90	76.998	ENSPMGG00000014431	parn	85	76.998	Periophthalmus_magnuspinnatus
ENSCVAG00000014848	parn	83	71.181	ENSPEMG00000018439	Parn	91	71.181	Peromyscus_maniculatus_bairdii
ENSCVAG00000014848	parn	76	69.364	ENSPMAG00000003956	parn	98	69.364	Petromyzon_marinus
ENSCVAG00000014848	parn	62	72.170	ENSPCIG00000001259	PARN	91	77.966	Phascolarctos_cinereus
ENSCVAG00000014848	parn	100	90.776	ENSPFOG00000012823	parn	100	90.776	Poecilia_formosa
ENSCVAG00000014848	parn	100	90.922	ENSPLAG00000006395	parn	100	90.922	Poecilia_latipinna
ENSCVAG00000014848	parn	100	90.922	ENSPMEG00000007711	parn	100	90.922	Poecilia_mexicana
ENSCVAG00000014848	parn	100	91.069	ENSPREG00000000147	parn	100	91.069	Poecilia_reticulata
ENSCVAG00000014848	parn	83	73.038	ENSPPYG00000007123	PARN	91	73.038	Pongo_abelii
ENSCVAG00000014848	parn	78	63.521	ENSPCAG00000001741	PARN	82	67.594	Procavia_capensis
ENSCVAG00000014848	parn	83	70.377	ENSPCOG00000019292	PARN	91	76.271	Propithecus_coquereli
ENSCVAG00000014848	parn	78	74.480	ENSPVAG00000002547	PARN	83	74.480	Pteropus_vampyrus
ENSCVAG00000014848	parn	100	85.088	ENSPNYG00000006835	parn	100	85.380	Pundamilia_nyererei
ENSCVAG00000014848	parn	93	69.735	ENSPNAG00000018905	parn	100	69.735	Pygocentrus_nattereri
ENSCVAG00000014848	parn	100	64.296	ENSRNOG00000002912	Parn	96	77.551	Rattus_norvegicus
ENSCVAG00000014848	parn	83	71.747	ENSSBOG00000034726	PARN	87	77.966	Saimiri_boliviensis_boliviensis
ENSCVAG00000014848	parn	61	79.187	ENSSHAG00000008493	PARN	93	79.187	Sarcophilus_harrisii
ENSCVAG00000014848	parn	100	69.844	ENSSFOG00015014165	parn	98	73.869	Scleropages_formosus
ENSCVAG00000014848	parn	100	80.114	ENSSMAG00000000685	parn	100	80.401	Scophthalmus_maximus
ENSCVAG00000014848	parn	100	84.840	ENSSDUG00000014555	parn	100	85.277	Seriola_dumerili
ENSCVAG00000014848	parn	64	79.080	ENSSARG00000014339	PARN	75	79.080	Sorex_araneus
ENSCVAG00000014848	parn	83	72.101	ENSSPUG00000007719	PARN	92	72.101	Sphenodon_punctatus
ENSCVAG00000014848	parn	100	86.550	ENSSPAG00000007095	parn	100	86.550	Stegastes_partitus
ENSCVAG00000014848	parn	100	65.836	ENSSSCG00000007878	PARN	89	65.689	Sus_scrofa
ENSCVAG00000014848	parn	85	69.983	ENSTGUG00000004971	PARN	95	69.885	Taeniopygia_guttata
ENSCVAG00000014848	parn	51	30.447	ENSTGUG00000011418	PNLDC1	68	30.028	Taeniopygia_guttata
ENSCVAG00000014848	parn	83	86.596	ENSTNIG00000008252	parn	90	87.302	Tetraodon_nigroviridis
ENSCVAG00000014848	parn	74	60.687	ENSTBEG00000010407	PARN	90	61.069	Tupaia_belangeri
ENSCVAG00000014848	parn	71	78.850	ENSTTRG00000002843	PARN	77	78.850	Tursiops_truncatus
ENSCVAG00000014848	parn	70	65.272	ENSUAMG00000008283	PARN	96	65.272	Ursus_americanus
ENSCVAG00000014848	parn	79	77.985	ENSUMAG00000004527	PARN	83	77.985	Ursus_maritimus
ENSCVAG00000014848	parn	82	70.415	ENSVPAG00000008968	PARN	93	70.415	Vicugna_pacos
ENSCVAG00000014848	parn	79	77.425	ENSVVUG00000019509	PARN	83	77.425	Vulpes_vulpes
ENSCVAG00000014848	parn	83	70.017	ENSXETG00000010994	parn	100	74.906	Xenopus_tropicalis
ENSCVAG00000014848	parn	87	86.074	ENSXCOG00000015990	parn	100	86.074	Xiphophorus_couchianus
ENSCVAG00000014848	parn	100	89.458	ENSXMAG00000014783	parn	100	89.605	Xiphophorus_maculatus