EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000015346 (Gene tree)
Gene ID: 107101181
Gene Symbol: si:ch211-11k18.4
Alias: -
Full Name: uncharacterized LOC107101181
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 12250 bases
Position: chrKL653564.1:159807-172056
Accession: 107101181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000012855	MMR_HSR1	PF01926.23	3.9e-06	1	1
ENSCVAP00000028339	MMR_HSR1	PF01926.23	5.1e-06	1	1
ENSCVAP00000028330	MMR_HSR1	PF01926.23	5.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000020233	-	2159	-	ENSCVAP00000028339	528 (aa)	-	-
ENSCVAT00000030496	-	1260	-	ENSCVAP00000012855	419 (aa)	-	-
ENSCVAT00000020223	-	2088	XM_015399982	ENSCVAP00000028330	451 (aa)	XP_015255468	UPI000742C438

Gene Model

Click here to download ENSCVAG00000015346's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000015346's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000015346	si:ch211-11k18.4	99	60.667	ENSCVAG00000011351	si:dkey-98f17.5	100	60.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000015346	si:ch211-11k18.4	100	90.244	ENSAPOG00000018833	si:ch211-11k18.4	100	90.244	Acanthochromis_polyacanthus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.222	ENSAPOG00000010378	si:dkey-98f17.5	100	60.222	Acanthochromis_polyacanthus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.222	ENSACIG00000017719	si:dkey-98f17.5	100	60.222	Amphilophus_citrinellus
ENSCVAG00000015346	si:ch211-11k18.4	99	87.333	ENSACIG00000006696	si:ch211-11k18.4	99	87.333	Amphilophus_citrinellus
ENSCVAG00000015346	si:ch211-11k18.4	100	90.909	ENSAOCG00000014284	si:ch211-11k18.4	100	90.909	Amphiprion_ocellaris
ENSCVAG00000015346	si:ch211-11k18.4	99	60.444	ENSAOCG00000008661	si:dkey-98f17.5	100	60.444	Amphiprion_ocellaris
ENSCVAG00000015346	si:ch211-11k18.4	100	90.687	ENSAPEG00000014910	si:ch211-11k18.4	100	90.687	Amphiprion_percula
ENSCVAG00000015346	si:ch211-11k18.4	99	60.444	ENSAPEG00000022447	si:dkey-98f17.5	100	60.444	Amphiprion_percula
ENSCVAG00000015346	si:ch211-11k18.4	100	89.135	ENSATEG00000004775	si:ch211-11k18.4	100	89.135	Anabas_testudineus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.889	ENSATEG00000007188	si:dkey-98f17.5	100	60.889	Anabas_testudineus
ENSCVAG00000015346	si:ch211-11k18.4	98	64.798	ENSACAG00000028632	-	98	64.798	Anolis_carolinensis
ENSCVAG00000015346	si:ch211-11k18.4	100	89.135	ENSACLG00000007907	si:ch211-11k18.4	100	89.135	Astatotilapia_calliptera
ENSCVAG00000015346	si:ch211-11k18.4	99	60.444	ENSACLG00000001308	si:dkey-98f17.5	100	60.444	Astatotilapia_calliptera
ENSCVAG00000015346	si:ch211-11k18.4	99	59.333	ENSAMXG00000001190	si:dkey-98f17.5	100	59.333	Astyanax_mexicanus
ENSCVAG00000015346	si:ch211-11k18.4	99	83.556	ENSAMXG00000017817	si:ch211-11k18.4	100	83.556	Astyanax_mexicanus
ENSCVAG00000015346	si:ch211-11k18.4	89	63.660	ENSCING00000020807	-	99	63.660	Ciona_intestinalis
ENSCVAG00000015346	si:ch211-11k18.4	99	59.778	ENSCSAVG00000009987	-	100	59.778	Ciona_savignyi
ENSCVAG00000015346	si:ch211-11k18.4	100	84.257	ENSCSEG00000017661	si:ch211-11k18.4	100	84.257	Cynoglossus_semilaevis
ENSCVAG00000015346	si:ch211-11k18.4	99	60.000	ENSCSEG00000017512	si:dkey-98f17.5	98	60.613	Cynoglossus_semilaevis
ENSCVAG00000015346	si:ch211-11k18.4	99	83.556	ENSDARG00000087869	si:ch211-11k18.4	100	88.776	Danio_rerio
ENSCVAG00000015346	si:ch211-11k18.4	98	60.181	ENSDARG00000068863	si:dkey-98f17.5	100	60.181	Danio_rerio
ENSCVAG00000015346	si:ch211-11k18.4	87	59.239	ENSEBUG00000007620	si:dkey-98f17.5	98	59.239	Eptatretus_burgeri
ENSCVAG00000015346	si:ch211-11k18.4	99	59.424	ENSELUG00000003365	si:dkey-98f17.5	100	59.645	Esox_lucius
ENSCVAG00000015346	si:ch211-11k18.4	100	92.683	ENSFHEG00000019820	si:ch211-11k18.4	100	92.683	Fundulus_heteroclitus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.222	ENSFHEG00000012744	si:dkey-98f17.5	100	60.222	Fundulus_heteroclitus
ENSCVAG00000015346	si:ch211-11k18.4	90	77.723	ENSGMOG00000003492	si:ch211-11k18.4	100	77.723	Gadus_morhua
ENSCVAG00000015346	si:ch211-11k18.4	99	60.222	ENSGAFG00000012362	si:dkey-98f17.5	89	60.222	Gambusia_affinis
ENSCVAG00000015346	si:ch211-11k18.4	100	90.687	ENSGAFG00000005677	si:ch211-11k18.4	100	90.687	Gambusia_affinis
ENSCVAG00000015346	si:ch211-11k18.4	62	73.846	ENSGACG00000009399	si:dkey-98f17.5	100	73.846	Gasterosteus_aculeatus
ENSCVAG00000015346	si:ch211-11k18.4	90	88.861	ENSGACG00000013134	si:ch211-11k18.4	100	88.861	Gasterosteus_aculeatus
ENSCVAG00000015346	si:ch211-11k18.4	100	89.357	ENSHBUG00000020638	si:ch211-11k18.4	100	89.357	Haplochromis_burtoni
ENSCVAG00000015346	si:ch211-11k18.4	99	60.667	ENSHBUG00000008331	si:dkey-98f17.5	100	60.667	Haplochromis_burtoni
ENSCVAG00000015346	si:ch211-11k18.4	99	89.111	ENSHCOG00000014773	si:ch211-11k18.4	100	89.111	Hippocampus_comes
ENSCVAG00000015346	si:ch211-11k18.4	99	58.810	ENSHCOG00000016505	si:dkey-98f17.5	98	58.124	Hippocampus_comes
ENSCVAG00000015346	si:ch211-11k18.4	95	81.683	ENSIPUG00000016678	si:ch211-11k18.4	98	81.566	Ictalurus_punctatus
ENSCVAG00000015346	si:ch211-11k18.4	99	58.407	ENSIPUG00000019981	si:dkey-98f17.5	100	58.407	Ictalurus_punctatus
ENSCVAG00000015346	si:ch211-11k18.4	90	70.789	ENSIPUG00000016694	si:ch211-11k18.4	85	70.984	Ictalurus_punctatus
ENSCVAG00000015346	si:ch211-11k18.4	99	89.778	ENSKMAG00000009327	si:ch211-11k18.4	99	89.778	Kryptolebias_marmoratus
ENSCVAG00000015346	si:ch211-11k18.4	99	59.333	ENSKMAG00000014997	si:dkey-98f17.5	100	58.889	Kryptolebias_marmoratus
ENSCVAG00000015346	si:ch211-11k18.4	99	59.778	ENSLBEG00000012756	si:dkey-98f17.5	100	59.556	Labrus_bergylta
ENSCVAG00000015346	si:ch211-11k18.4	98	59.910	ENSLACG00000017433	si:dkey-98f17.5	97	60.045	Latimeria_chalumnae
ENSCVAG00000015346	si:ch211-11k18.4	99	62.584	ENSLACG00000004899	-	99	62.584	Latimeria_chalumnae
ENSCVAG00000015346	si:ch211-11k18.4	99	72.062	ENSLACG00000006280	si:ch211-11k18.4	100	72.062	Latimeria_chalumnae
ENSCVAG00000015346	si:ch211-11k18.4	99	59.645	ENSLOCG00000003824	si:dkey-98f17.5	99	59.645	Lepisosteus_oculatus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.089	ENSMAMG00000014528	si:dkey-98f17.5	100	60.089	Mastacembelus_armatus
ENSCVAG00000015346	si:ch211-11k18.4	96	90.046	ENSMAMG00000002536	si:ch211-11k18.4	99	90.069	Mastacembelus_armatus
ENSCVAG00000015346	si:ch211-11k18.4	100	88.914	ENSMZEG00005008941	si:ch211-11k18.4	100	88.914	Maylandia_zebra
ENSCVAG00000015346	si:ch211-11k18.4	99	60.667	ENSMZEG00005016572	si:dkey-98f17.5	100	60.667	Maylandia_zebra
ENSCVAG00000015346	si:ch211-11k18.4	100	81.375	ENSMMOG00000012485	si:ch211-11k18.4	100	81.375	Mola_mola
ENSCVAG00000015346	si:ch211-11k18.4	98	61.136	ENSMALG00000012761	si:dkey-98f17.5	100	61.591	Monopterus_albus
ENSCVAG00000015346	si:ch211-11k18.4	100	88.027	ENSMALG00000019735	si:ch211-11k18.4	100	88.027	Monopterus_albus
ENSCVAG00000015346	si:ch211-11k18.4	96	89.120	ENSNBRG00000002220	si:ch211-11k18.4	99	89.145	Neolamprologus_brichardi
ENSCVAG00000015346	si:ch211-11k18.4	99	60.579	ENSNBRG00000006068	si:dkey-98f17.5	100	60.579	Neolamprologus_brichardi
ENSCVAG00000015346	si:ch211-11k18.4	99	60.889	ENSONIG00000013568	si:dkey-98f17.5	100	60.889	Oreochromis_niloticus
ENSCVAG00000015346	si:ch211-11k18.4	100	89.135	ENSONIG00000019412	si:ch211-11k18.4	100	89.135	Oreochromis_niloticus
ENSCVAG00000015346	si:ch211-11k18.4	91	61.463	ENSORLG00000007958	si:dkey-98f17.5	95	61.220	Oryzias_latipes
ENSCVAG00000015346	si:ch211-11k18.4	100	88.248	ENSORLG00000012015	si:ch211-11k18.4	100	88.248	Oryzias_latipes
ENSCVAG00000015346	si:ch211-11k18.4	100	87.805	ENSORLG00020012386	si:ch211-11k18.4	100	87.805	Oryzias_latipes_hni
ENSCVAG00000015346	si:ch211-11k18.4	99	59.556	ENSORLG00020013350	si:dkey-98f17.5	100	59.333	Oryzias_latipes_hni
ENSCVAG00000015346	si:ch211-11k18.4	99	59.556	ENSORLG00015002000	si:dkey-98f17.5	100	59.333	Oryzias_latipes_hsok
ENSCVAG00000015346	si:ch211-11k18.4	100	88.027	ENSORLG00015022862	si:ch211-11k18.4	100	88.027	Oryzias_latipes_hsok
ENSCVAG00000015346	si:ch211-11k18.4	100	88.914	ENSOMEG00000018686	si:ch211-11k18.4	100	88.914	Oryzias_melastigma
ENSCVAG00000015346	si:ch211-11k18.4	99	59.333	ENSOMEG00000003154	si:dkey-98f17.5	100	59.333	Oryzias_melastigma
ENSCVAG00000015346	si:ch211-11k18.4	99	60.000	ENSPKIG00000024621	si:dkey-98f17.5	100	60.000	Paramormyrops_kingsleyae
ENSCVAG00000015346	si:ch211-11k18.4	99	77.556	ENSPKIG00000023918	-	98	77.556	Paramormyrops_kingsleyae
ENSCVAG00000015346	si:ch211-11k18.4	99	81.778	ENSPKIG00000018807	si:ch211-11k18.4	100	81.778	Paramormyrops_kingsleyae
ENSCVAG00000015346	si:ch211-11k18.4	100	88.027	ENSPMGG00000016507	si:ch211-11k18.4	100	88.027	Periophthalmus_magnuspinnatus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.444	ENSPMGG00000019065	si:dkey-98f17.5	100	60.444	Periophthalmus_magnuspinnatus
ENSCVAG00000015346	si:ch211-11k18.4	100	92.461	ENSPFOG00000007976	si:ch211-11k18.4	100	92.461	Poecilia_formosa
ENSCVAG00000015346	si:ch211-11k18.4	99	60.044	ENSPFOG00000015142	si:dkey-98f17.5	100	60.044	Poecilia_formosa
ENSCVAG00000015346	si:ch211-11k18.4	100	92.461	ENSPLAG00000019794	si:ch211-11k18.4	100	92.461	Poecilia_latipinna
ENSCVAG00000015346	si:ch211-11k18.4	99	60.444	ENSPLAG00000003709	si:dkey-98f17.5	100	60.444	Poecilia_latipinna
ENSCVAG00000015346	si:ch211-11k18.4	99	60.222	ENSPMEG00000018709	si:dkey-98f17.5	94	60.222	Poecilia_mexicana
ENSCVAG00000015346	si:ch211-11k18.4	100	92.239	ENSPMEG00000024198	si:ch211-11k18.4	100	92.396	Poecilia_mexicana
ENSCVAG00000015346	si:ch211-11k18.4	93	87.294	ENSPREG00000015319	si:ch211-11k18.4	97	87.294	Poecilia_reticulata
ENSCVAG00000015346	si:ch211-11k18.4	98	60.909	ENSPREG00000000708	si:dkey-98f17.5	100	60.909	Poecilia_reticulata
ENSCVAG00000015346	si:ch211-11k18.4	100	89.357	ENSPNYG00000017099	si:ch211-11k18.4	100	89.357	Pundamilia_nyererei
ENSCVAG00000015346	si:ch211-11k18.4	99	60.667	ENSPNYG00000017266	si:dkey-98f17.5	100	60.667	Pundamilia_nyererei
ENSCVAG00000015346	si:ch211-11k18.4	99	59.333	ENSPNAG00000021352	si:dkey-98f17.5	100	59.333	Pygocentrus_nattereri
ENSCVAG00000015346	si:ch211-11k18.4	99	84.187	ENSPNAG00000022138	si:ch211-11k18.4	99	84.187	Pygocentrus_nattereri
ENSCVAG00000015346	si:ch211-11k18.4	99	79.510	ENSSFOG00015000985	si:ch211-11k18.4	94	79.510	Scleropages_formosus
ENSCVAG00000015346	si:ch211-11k18.4	99	58.720	ENSSFOG00015017965	si:dkey-98f17.5	100	57.965	Scleropages_formosus
ENSCVAG00000015346	si:ch211-11k18.4	99	59.778	ENSSMAG00000011905	si:dkey-98f17.5	100	59.333	Scophthalmus_maximus
ENSCVAG00000015346	si:ch211-11k18.4	100	88.248	ENSSMAG00000009651	si:ch211-11k18.4	100	88.248	Scophthalmus_maximus
ENSCVAG00000015346	si:ch211-11k18.4	100	90.022	ENSSDUG00000016411	si:ch211-11k18.4	100	90.022	Seriola_dumerili
ENSCVAG00000015346	si:ch211-11k18.4	98	59.775	ENSSDUG00000013457	si:dkey-98f17.5	99	59.775	Seriola_dumerili
ENSCVAG00000015346	si:ch211-11k18.4	100	89.579	ENSSLDG00000019145	si:ch211-11k18.4	100	89.579	Seriola_lalandi_dorsalis
ENSCVAG00000015346	si:ch211-11k18.4	98	59.551	ENSSLDG00000025395	si:dkey-98f17.5	99	59.551	Seriola_lalandi_dorsalis
ENSCVAG00000015346	si:ch211-11k18.4	87	65.990	ENSSPUG00000010096	-	99	65.990	Sphenodon_punctatus
ENSCVAG00000015346	si:ch211-11k18.4	100	90.244	ENSSPAG00000010697	si:ch211-11k18.4	100	90.244	Stegastes_partitus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.667	ENSSPAG00000018800	si:dkey-98f17.5	100	60.667	Stegastes_partitus
ENSCVAG00000015346	si:ch211-11k18.4	100	86.918	ENSTRUG00000020291	si:ch211-11k18.4	100	86.918	Takifugu_rubripes
ENSCVAG00000015346	si:ch211-11k18.4	99	59.111	ENSTRUG00000021287	si:dkey-98f17.5	100	59.111	Takifugu_rubripes
ENSCVAG00000015346	si:ch211-11k18.4	99	68.142	ENSXETG00000031783	-	99	68.142	Xenopus_tropicalis
ENSCVAG00000015346	si:ch211-11k18.4	99	60.000	ENSXCOG00000017002	si:dkey-98f17.5	100	60.000	Xiphophorus_couchianus
ENSCVAG00000015346	si:ch211-11k18.4	100	86.253	ENSXCOG00000018094	si:ch211-11k18.4	100	86.168	Xiphophorus_couchianus
ENSCVAG00000015346	si:ch211-11k18.4	99	60.222	ENSXMAG00000007688	si:dkey-98f17.5	95	60.222	Xiphophorus_maculatus
ENSCVAG00000015346	si:ch211-11k18.4	100	92.683	ENSXMAG00000021235	si:ch211-11k18.4	100	92.683	Xiphophorus_maculatus