EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000015394 (Gene tree)
Gene ID: 107088664
Gene Symbol: si:ch73-14h10.2
Alias: wu:fe48h10|zgc:101795
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 4772 bases
Position: chrKL652726.1:543260-548031
Accession: 107088664
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000028389	LSM	PF01423.22	9.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000020334	-	1137	XM_015380967	ENSCVAP00000028389	106 (aa)	XP_015236453	-

Gene Model

Click here to download ENSCVAG00000015394's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000015394's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000015394	si:ch73-14h10.2	59	36.923	ENSCVAG00000021828	lsm4	63	32.558
ENSCVAG00000015394	si:ch73-14h10.2	69	32.877	ENSCVAG00000001536	oscp1a	54	32.877
ENSCVAG00000015394	si:ch73-14h10.2	73	34.177	ENSCVAG00000010601	lsm4	68	31.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSG00000204392	LSM2	99	98.936	Homo_sapiens
ENSCVAG00000015394	si:ch73-14h10.2	100	97.170	ENSAPOG00000017967	si:ch73-14h10.2	99	100.000	Acanthochromis_polyacanthus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSAMEG00000006483	LSM2	100	98.936	Ailuropoda_melanoleuca
ENSCVAG00000015394	si:ch73-14h10.2	90	100.000	ENSACIG00000007795	si:ch73-14h10.2	63	100.000	Amphilophus_citrinellus
ENSCVAG00000015394	si:ch73-14h10.2	99	97.143	ENSAOCG00000006949	si:ch73-14h10.2	87	97.143	Amphiprion_ocellaris
ENSCVAG00000015394	si:ch73-14h10.2	100	95.283	ENSAPEG00000020375	si:ch73-14h10.2	98	95.283	Amphiprion_percula
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSATEG00000011376	si:ch73-14h10.2	99	100.000	Anabas_testudineus
ENSCVAG00000015394	si:ch73-14h10.2	91	97.917	ENSACAG00000017281	LSM2	92	97.917	Anolis_carolinensis
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSANAG00000028372	LSM2	99	98.936	Aotus_nancymaae
ENSCVAG00000015394	si:ch73-14h10.2	86	80.220	ENSANAG00000028033	-	96	80.220	Aotus_nancymaae
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSACLG00000024717	smx5	99	100.000	Astatotilapia_calliptera
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSAMXG00000036868	si:ch73-14h10.2	99	100.000	Astyanax_mexicanus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSBTAG00000005634	LSM2	99	98.936	Bos_taurus
ENSCVAG00000015394	si:ch73-14h10.2	88	82.796	WBGene00001808	gut-2	96	82.796	Caenorhabditis_elegans
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCJAG00000040899	LSM2	99	98.936	Callithrix_jacchus
ENSCVAG00000015394	si:ch73-14h10.2	67	97.183	ENSCAFG00020016978	-	88	97.183	Canis_lupus_dingo
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCHIG00000016153	LSM2	100	98.936	Capra_hircus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSTSYG00000034844	LSM2	99	98.936	Carlito_syrichta
ENSCVAG00000015394	si:ch73-14h10.2	88	89.247	ENSTSYG00000030015	-	99	89.247	Carlito_syrichta
ENSCVAG00000015394	si:ch73-14h10.2	68	98.611	ENSCAPG00000009970	LSM2	92	98.611	Cavia_aperea
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCPOG00000021053	LSM2	99	98.936	Cavia_porcellus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCCAG00000024276	LSM2	99	98.936	Cebus_capucinus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCATG00000013737	LSM2	99	98.936	Cercocebus_atys
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCLAG00000008081	LSM2	99	98.936	Chinchilla_lanigera
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCSAG00000008800	LSM2	99	98.936	Chlorocebus_sabaeus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCHOG00000007702	LSM2	99	98.936	Choloepus_hoffmanni
ENSCVAG00000015394	si:ch73-14h10.2	89	95.745	ENSCING00000022677	-	99	95.745	Ciona_intestinalis
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCANG00000039576	LSM2	99	98.936	Colobus_angolensis_palliatus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSCGRG00001013932	Lsm2	99	98.936	Cricetulus_griseus_chok1gshd
ENSCVAG00000015394	si:ch73-14h10.2	68	98.611	ENSCGRG00000013311	Lsm2	62	98.611	Cricetulus_griseus_crigri
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSCSEG00000002911	si:ch73-14h10.2	99	100.000	Cynoglossus_semilaevis
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSDARG00000070867	smx5	99	98.936	Danio_rerio
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSDNOG00000002633	LSM2	100	98.936	Dasypus_novemcinctus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSDORG00000026571	Lsm2	99	98.936	Dipodomys_ordii
ENSCVAG00000015394	si:ch73-14h10.2	85	95.556	FBgn0036277	CG10418	95	95.556	Drosophila_melanogaster
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSEASG00005015670	LSM2	79	98.936	Equus_asinus_asinus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSECAG00000018791	LSM2	79	98.936	Equus_caballus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSELUG00000008241	smx5	99	98.936	Esox_lucius
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSFCAG00000045887	LSM2	99	98.936	Felis_catus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSFDAG00000000390	LSM2	99	98.936	Fukomys_damarensis
ENSCVAG00000015394	si:ch73-14h10.2	89	96.875	ENSFHEG00000009619	si:ch73-14h10.2	100	96.875	Fundulus_heteroclitus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSGMOG00000019208	si:ch73-14h10.2	100	100.000	Gadus_morhua
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSGAFG00000017286	si:ch73-14h10.2	99	100.000	Gambusia_affinis
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSGACG00000003827	si:ch73-14h10.2	99	100.000	Gasterosteus_aculeatus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSGAGG00000012458	LSM2	99	98.936	Gopherus_agassizii
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSGGOG00000011383	LSM2	99	98.936	Gorilla_gorilla
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSHGLG00000011299	LSM2	99	98.936	Heterocephalus_glaber_female
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSHGLG00100017194	LSM2	99	98.936	Heterocephalus_glaber_male
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSHCOG00000014057	si:ch73-14h10.2	99	100.000	Hippocampus_comes
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSIPUG00000010539	lsm2	99	100.000	Ictalurus_punctatus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSSTOG00000013144	LSM2	99	98.936	Ictidomys_tridecemlineatus
ENSCVAG00000015394	si:ch73-14h10.2	84	76.404	ENSJJAG00000019477	-	100	76.404	Jaculus_jaculus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSKMAG00000014909	si:ch73-14h10.2	99	100.000	Kryptolebias_marmoratus
ENSCVAG00000015394	si:ch73-14h10.2	91	98.958	ENSLBEG00000025781	si:ch73-14h10.2	100	98.958	Labrus_bergylta
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSLACG00000015064	LSM2	99	100.000	Latimeria_chalumnae
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSLOCG00000005228	si:ch73-14h10.2	99	100.000	Lepisosteus_oculatus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSLAFG00000016139	LSM2	100	98.936	Loxodonta_africana
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMFAG00000001016	LSM2	99	98.936	Macaca_fascicularis
ENSCVAG00000015394	si:ch73-14h10.2	89	80.851	ENSMMUG00000045473	-	97	80.851	Macaca_mulatta
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMMUG00000006832	LSM2	99	98.936	Macaca_mulatta
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMNEG00000045355	LSM2	99	98.936	Macaca_nemestrina
ENSCVAG00000015394	si:ch73-14h10.2	71	84.000	ENSMNEG00000040973	-	91	84.000	Macaca_nemestrina
ENSCVAG00000015394	si:ch73-14h10.2	89	79.787	ENSMLEG00000031181	-	97	79.787	Mandrillus_leucophaeus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMLEG00000037369	-	99	98.936	Mandrillus_leucophaeus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSMAMG00000010053	si:ch73-14h10.2	72	100.000	Mastacembelus_armatus
ENSCVAG00000015394	si:ch73-14h10.2	89	97.917	ENSMZEG00005008688	si:ch73-14h10.2	100	97.917	Maylandia_zebra
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMAUG00000021966	Lsm2	99	98.936	Mesocricetus_auratus
ENSCVAG00000015394	si:ch73-14h10.2	68	77.778	ENSMICG00000046764	-	92	77.778	Microcebus_murinus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMOCG00000015306	Lsm2	99	98.936	Microtus_ochrogaster
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMMOG00000005603	si:ch73-14h10.2	100	98.936	Mola_mola
ENSCVAG00000015394	si:ch73-14h10.2	90	100.000	ENSMODG00000015177	LSM2	100	100.000	Monodelphis_domestica
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSMALG00000016490	si:ch73-14h10.2	99	100.000	Monopterus_albus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	Mus_caroli
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSMUSG00000007050	Lsm2	99	98.936	Mus_musculus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	MGP_PahariEiJ_G0020485	Lsm2	99	98.936	Mus_pahari
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	MGP_SPRETEiJ_G0022395	Lsm2	99	98.936	Mus_spretus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSNGAG00000003997	Lsm2	99	98.936	Nannospalax_galili
ENSCVAG00000015394	si:ch73-14h10.2	89	97.917	ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	Neolamprologus_brichardi
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSNLEG00000035542	LSM2	99	98.936	Nomascus_leucogenys
ENSCVAG00000015394	si:ch73-14h10.2	67	100.000	ENSMEUG00000003419	LSM2	100	100.000	Notamacropus_eugenii
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSOPRG00000003668	LSM2	99	98.936	Ochotona_princeps
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSODEG00000017583	LSM2	99	98.936	Octodon_degus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSONIG00000019321	si:ch73-14h10.2	99	100.000	Oreochromis_niloticus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSOANG00000005398	LSM2	100	98.936	Ornithorhynchus_anatinus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSOCUG00000002583	LSM2	99	98.936	Oryctolagus_cuniculus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSORLG00000029858	si:ch73-14h10.2	99	100.000	Oryzias_latipes
ENSCVAG00000015394	si:ch73-14h10.2	89	76.423	ENSORLG00015000465	si:ch73-14h10.2	99	76.423	Oryzias_latipes_hsok
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSOMEG00000002892	si:ch73-14h10.2	99	100.000	Oryzias_melastigma
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSOARG00000004575	LSM2	100	98.936	Ovis_aries
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPPAG00000032431	LSM2	99	98.936	Pan_paniscus
ENSCVAG00000015394	si:ch73-14h10.2	71	85.333	ENSPPAG00000043941	-	93	85.333	Pan_paniscus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPPRG00000015353	LSM2	99	98.936	Panthera_pardus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPTIG00000010303	LSM2	99	98.936	Panthera_tigris_altaica
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPTRG00000017986	LSM2	99	98.936	Pan_troglodytes
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPANG00000024577	LSM2	99	98.936	Papio_anubis
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSPKIG00000007028	si:ch73-14h10.2	99	100.000	Paramormyrops_kingsleyae
ENSCVAG00000015394	si:ch73-14h10.2	91	97.917	ENSPSIG00000004458	LSM2	80	97.917	Pelodiscus_sinensis
ENSCVAG00000015394	si:ch73-14h10.2	89	97.872	ENSPMGG00000018511	si:ch73-14h10.2	100	97.872	Periophthalmus_magnuspinnatus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSPCIG00000018560	-	95	100.000	Phascolarctos_cinereus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSPFOG00000001621	si:ch73-14h10.2	99	100.000	Poecilia_formosa
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSPLAG00000017165	si:ch73-14h10.2	99	100.000	Poecilia_latipinna
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSPMEG00000019574	si:ch73-14h10.2	99	100.000	Poecilia_mexicana
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPREG00000016534	si:ch73-14h10.2	100	98.936	Poecilia_reticulata
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPPYG00000016461	-	53	98.936	Pongo_abelii
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPCAG00000013737	LSM2	99	98.936	Procavia_capensis
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPCOG00000020134	LSM2	99	98.936	Propithecus_coquereli
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSPVAG00000012405	LSM2	99	98.936	Pteropus_vampyrus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSPNYG00000019298	smx5	99	100.000	Pundamilia_nyererei
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	Pygocentrus_nattereri
ENSCVAG00000015394	si:ch73-14h10.2	50	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSRNOG00000048725	Lsm2	99	98.936	Rattus_norvegicus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSRBIG00000010172	LSM2	99	98.936	Rhinopithecus_bieti
ENSCVAG00000015394	si:ch73-14h10.2	71	85.333	ENSRBIG00000011356	-	91	85.333	Rhinopithecus_bieti
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSRROG00000030345	LSM2	99	98.936	Rhinopithecus_roxellana
ENSCVAG00000015394	si:ch73-14h10.2	71	85.333	ENSRROG00000030708	-	91	85.333	Rhinopithecus_roxellana
ENSCVAG00000015394	si:ch73-14h10.2	89	63.830	YBL026W	LSM2	99	63.830	Saccharomyces_cerevisiae
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSSBOG00000018943	LSM2	99	98.936	Saimiri_boliviensis_boliviensis
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSSFOG00015006734	lsm2	99	100.000	Scleropages_formosus
ENSCVAG00000015394	si:ch73-14h10.2	100	96.226	ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	Scophthalmus_maximus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSSDUG00000021605	smx5	99	100.000	Seriola_dumerili
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSSLDG00000002765	si:ch73-14h10.2	99	100.000	Seriola_lalandi_dorsalis
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSSPUG00000009631	LSM2	99	100.000	Sphenodon_punctatus
ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	ENSSPAG00000016904	si:ch73-14h10.2	99	100.000	Stegastes_partitus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSSSCG00000039021	LSM2	99	98.936	Sus_scrofa
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	Takifugu_rubripes
ENSCVAG00000015394	si:ch73-14h10.2	63	95.522	ENSTNIG00000013770	si:ch73-14h10.2	100	95.522	Tetraodon_nigroviridis
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSTTRG00000014131	LSM2	99	98.936	Tursiops_truncatus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSUMAG00000013425	LSM2	65	98.936	Ursus_maritimus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSVPAG00000001761	LSM2	100	98.936	Vicugna_pacos
ENSCVAG00000015394	si:ch73-14h10.2	71	97.333	ENSVVUG00000016264	-	93	97.333	Vulpes_vulpes
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSXETG00000024077	lsm2	99	98.936	Xenopus_tropicalis
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSXCOG00000006078	si:ch73-14h10.2	100	98.936	Xiphophorus_couchianus
ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	ENSXMAG00000028018	si:ch73-14h10.2	100	98.936	Xiphophorus_maculatus