EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000015547 (Gene tree)
Gene ID: 107091372
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 8877 bases
Position: chrKL652515.1:1675083-1683959
Accession: 107091372
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000028463	RRM_1	PF00076.22	7.9e-16	1	1
ENSCVAP00000028470	RRM_1	PF00076.22	7.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000030585	PABPN1L-202	1692	-	ENSCVAP00000028463	263 (aa)	-	UPI000742A607
ENSCVAT00000020503	PABPN1L-201	1790	XM_015385241	ENSCVAP00000028470	263 (aa)	XP_015240727	UPI000742A607

Gene Model

Click here to download ENSCVAG00000015547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000015547's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000015547	PABPN1L	59	62.581	ENSCVAG00000003152	pabpn1	63	61.438

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000015547	PABPN1L	91	90.833	ENSAPOG00000000685	PABPN1L	78	90.417	Acanthochromis_polyacanthus
ENSCVAG00000015547	PABPN1L	91	86.192	ENSACIG00000021400	PABPN1L	98	86.192	Amphilophus_citrinellus
ENSCVAG00000015547	PABPN1L	100	91.635	ENSAOCG00000019844	PABPN1L	100	91.635	Amphiprion_ocellaris
ENSCVAG00000015547	PABPN1L	100	92.015	ENSAPEG00000019534	PABPN1L	100	92.015	Amphiprion_percula
ENSCVAG00000015547	PABPN1L	91	91.213	ENSATEG00000011646	PABPN1L	95	90.377	Anabas_testudineus
ENSCVAG00000015547	PABPN1L	66	57.714	ENSACAG00000013250	PABPN1L	74	60.690	Anolis_carolinensis
ENSCVAG00000015547	PABPN1L	71	50.000	ENSANAG00000038178	PABPN1L	58	53.416	Aotus_nancymaae
ENSCVAG00000015547	PABPN1L	100	86.692	ENSACLG00000025147	PABPN1L	100	87.452	Astatotilapia_calliptera
ENSCVAG00000015547	PABPN1L	100	82.955	ENSCSEG00000001142	pabpn1l	100	82.197	Cynoglossus_semilaevis
ENSCVAG00000015547	PABPN1L	69	51.648	ENSDNOG00000034677	PABPN1L	57	53.947	Dasypus_novemcinctus
ENSCVAG00000015547	PABPN1L	72	49.495	ENSEASG00005000777	PABPN1L	61	51.190	Equus_asinus_asinus
ENSCVAG00000015547	PABPN1L	96	66.929	ENSELUG00000018385	PABPN1L	96	62.451	Esox_lucius
ENSCVAG00000015547	PABPN1L	63	52.047	ENSFCAG00000010465	PABPN1L	59	50.909	Felis_catus
ENSCVAG00000015547	PABPN1L	60	61.250	ENSFALG00000003319	PABPN1L	59	59.459	Ficedula_albicollis
ENSCVAG00000015547	PABPN1L	58	55.975	ENSFDAG00000021067	PABPN1L	60	51.534	Fukomys_damarensis
ENSCVAG00000015547	PABPN1L	100	95.057	ENSFHEG00000018295	PABPN1L	100	93.536	Fundulus_heteroclitus
ENSCVAG00000015547	PABPN1L	100	74.906	ENSGMOG00000001475	PABPN1L	100	72.285	Gadus_morhua
ENSCVAG00000015547	PABPN1L	55	61.379	ENSGALG00000006242	PABPN1L	63	64.865	Gallus_gallus
ENSCVAG00000015547	PABPN1L	100	97.338	ENSGAFG00000012565	PABPN1L	100	97.338	Gambusia_affinis
ENSCVAG00000015547	PABPN1L	100	83.895	ENSGACG00000015428	PABPN1L	100	83.895	Gasterosteus_aculeatus
ENSCVAG00000015547	PABPN1L	71	50.971	ENSGGOG00000012670	PABPN1L	55	43.056	Gorilla_gorilla
ENSCVAG00000015547	PABPN1L	100	88.593	ENSHBUG00000002388	PABPN1L	100	87.833	Haplochromis_burtoni
ENSCVAG00000015547	PABPN1L	100	85.075	ENSHCOG00000004151	PABPN1L	99	83.955	Hippocampus_comes
ENSCVAG00000015547	PABPN1L	67	62.983	ENSIPUG00000023583	PABPN1L	73	66.887	Ictalurus_punctatus
ENSCVAG00000015547	PABPN1L	74	50.515	ENSJJAG00000006433	Pabpn1l	58	52.830	Jaculus_jaculus
ENSCVAG00000015547	PABPN1L	82	91.628	ENSKMAG00000001112	PABPN1L	92	93.237	Kryptolebias_marmoratus
ENSCVAG00000015547	PABPN1L	100	85.660	ENSLBEG00000011647	PABPN1L	97	87.547	Labrus_bergylta
ENSCVAG00000015547	PABPN1L	100	86.692	ENSMZEG00005002186	PABPN1L	100	87.452	Maylandia_zebra
ENSCVAG00000015547	PABPN1L	75	91.414	ENSMMOG00000017714	PABPN1L	86	91.414	Mola_mola
ENSCVAG00000015547	PABPN1L	100	85.171	ENSMALG00000016926	PABPN1L	100	84.791	Monopterus_albus
ENSCVAG00000015547	PABPN1L	90	89.916	ENSNBRG00000017078	PABPN1L	100	89.076	Neolamprologus_brichardi
ENSCVAG00000015547	PABPN1L	100	84.030	ENSORLG00000026560	PABPN1L	100	81.369	Oryzias_latipes
ENSCVAG00000015547	PABPN1L	100	83.650	ENSORLG00020015068	PABPN1L	100	80.989	Oryzias_latipes_hni
ENSCVAG00000015547	PABPN1L	100	84.030	ENSORLG00015000397	PABPN1L	100	81.369	Oryzias_latipes_hsok
ENSCVAG00000015547	PABPN1L	100	81.749	ENSOMEG00000017896	PABPN1L	72	81.749	Oryzias_melastigma
ENSCVAG00000015547	PABPN1L	63	52.047	ENSPPRG00000015106	PABPN1L	59	50.909	Panthera_pardus
ENSCVAG00000015547	PABPN1L	63	51.515	ENSPTIG00000015606	PABPN1L	61	49.686	Panthera_tigris_altaica
ENSCVAG00000015547	PABPN1L	61	63.354	ENSPSIG00000003404	PABPN1L	52	75.510	Pelodiscus_sinensis
ENSCVAG00000015547	PABPN1L	81	85.446	ENSPMGG00000013927	PABPN1L	91	86.473	Periophthalmus_magnuspinnatus
ENSCVAG00000015547	PABPN1L	50	61.940	ENSPCIG00000007038	-	67	69.072	Phascolarctos_cinereus
ENSCVAG00000015547	PABPN1L	100	97.719	ENSPFOG00000007001	PABPN1L	100	97.719	Poecilia_formosa
ENSCVAG00000015547	PABPN1L	100	97.719	ENSPLAG00000018431	PABPN1L	100	97.719	Poecilia_latipinna
ENSCVAG00000015547	PABPN1L	100	97.719	ENSPMEG00000009108	PABPN1L	100	97.719	Poecilia_mexicana
ENSCVAG00000015547	PABPN1L	73	84.264	ENSPMEG00000000169	-	97	84.264	Poecilia_mexicana
ENSCVAG00000015547	PABPN1L	88	97.835	ENSPREG00000022533	PABPN1L	100	97.835	Poecilia_reticulata
ENSCVAG00000015547	PABPN1L	71	51.485	ENSPVAG00000002716	PABPN1L	58	53.333	Pteropus_vampyrus
ENSCVAG00000015547	PABPN1L	100	86.692	ENSPNYG00000004803	PABPN1L	100	87.452	Pundamilia_nyererei
ENSCVAG00000015547	PABPN1L	72	52.153	ENSRROG00000035483	-	59	52.695	Rhinopithecus_roxellana
ENSCVAG00000015547	PABPN1L	100	83.271	ENSSMAG00000021348	PABPN1L	100	81.041	Scophthalmus_maximus
ENSCVAG00000015547	PABPN1L	100	90.875	ENSSDUG00000006986	PABPN1L	100	90.875	Seriola_dumerili
ENSCVAG00000015547	PABPN1L	100	91.255	ENSSLDG00000021845	PABPN1L	100	91.255	Seriola_lalandi_dorsalis
ENSCVAG00000015547	PABPN1L	100	90.875	ENSSPAG00000017978	PABPN1L	100	90.875	Stegastes_partitus
ENSCVAG00000015547	PABPN1L	100	79.468	ENSTRUG00000024725	PABPN1L	100	77.947	Takifugu_rubripes
ENSCVAG00000015547	PABPN1L	73	93.229	ENSTNIG00000009416	PABPN1L	100	93.229	Tetraodon_nigroviridis
ENSCVAG00000015547	PABPN1L	56	55.346	ENSXETG00000011258	pabpn1l	72	54.140	Xenopus_tropicalis
ENSCVAG00000015547	PABPN1L	88	97.835	ENSXCOG00000003254	PABPN1L	100	97.835	Xiphophorus_couchianus
ENSCVAG00000015547	PABPN1L	81	92.488	ENSXMAG00000029090	PABPN1L	89	97.475	Xiphophorus_maculatus