EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000015589 (Gene tree)
Gene ID: 107100565
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 11411 bases
Position: chrKL653488.1:26704-38114
Accession: 107100565
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000028505	RRM_1	PF00076.22	8.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000030602	-	1635	XM_015399099	ENSCVAP00000028505	406 (aa)	XP_015254585	UPI00074275DA

Gene Model

Click here to download ENSCVAG00000015589's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000015589's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000015589	rbm42	100	80.732	ENSAPOG00000015109	rbm42	100	81.463	Acanthochromis_polyacanthus
ENSCVAG00000015589	rbm42	100	76.341	ENSACIG00000010771	rbm42	100	76.585	Amphilophus_citrinellus
ENSCVAG00000015589	rbm42	100	81.707	ENSAOCG00000008873	rbm42	100	81.707	Amphiprion_ocellaris
ENSCVAG00000015589	rbm42	100	81.707	ENSAPEG00000012051	rbm42	99	81.707	Amphiprion_percula
ENSCVAG00000015589	rbm42	100	79.657	ENSATEG00000000536	rbm42	100	79.167	Anabas_testudineus
ENSCVAG00000015589	rbm42	100	81.463	ENSACLG00000004988	rbm42	100	80.732	Astatotilapia_calliptera
ENSCVAG00000015589	rbm42	100	69.535	ENSAMXG00000016545	rbm42	100	70.504	Astyanax_mexicanus
ENSCVAG00000015589	rbm42	97	77.307	ENSCSEG00000010248	rbm42	100	77.307	Cynoglossus_semilaevis
ENSCVAG00000015589	rbm42	100	71.845	ENSDARG00000039910	rbm42	100	67.933	Danio_rerio
ENSCVAG00000015589	rbm42	100	68.160	ENSELUG00000022403	rbm42	100	69.031	Esox_lucius
ENSCVAG00000015589	rbm42	73	88.294	ENSFHEG00000006764	rbm42	100	88.294	Fundulus_heteroclitus
ENSCVAG00000015589	rbm42	100	68.370	ENSGMOG00000012660	rbm42	100	65.493	Gadus_morhua
ENSCVAG00000015589	rbm42	77	87.179	ENSGAFG00000009059	rbm42	99	86.408	Gambusia_affinis
ENSCVAG00000015589	rbm42	100	77.073	ENSGACG00000004170	rbm42	100	76.585	Gasterosteus_aculeatus
ENSCVAG00000015589	rbm42	100	81.463	ENSHBUG00000011141	rbm42	100	80.732	Haplochromis_burtoni
ENSCVAG00000015589	rbm42	100	74.757	ENSHCOG00000021214	rbm42	100	75.728	Hippocampus_comes
ENSCVAG00000015589	rbm42	100	69.070	ENSIPUG00000022365	rbm42	99	69.451	Ictalurus_punctatus
ENSCVAG00000015589	rbm42	91	81.233	ENSKMAG00000015287	rbm42	99	80.429	Kryptolebias_marmoratus
ENSCVAG00000015589	rbm42	85	76.571	ENSLBEG00000004578	-	96	77.208	Labrus_bergylta
ENSCVAG00000015589	rbm42	100	76.513	ENSLBEG00000017547	rbm42	100	77.616	Labrus_bergylta
ENSCVAG00000015589	rbm42	100	65.647	ENSLOCG00000003368	rbm42	100	65.640	Lepisosteus_oculatus
ENSCVAG00000015589	rbm42	100	80.000	ENSMAMG00000006708	rbm42	100	80.488	Mastacembelus_armatus
ENSCVAG00000015589	rbm42	100	81.463	ENSMZEG00005025234	rbm42	100	80.732	Maylandia_zebra
ENSCVAG00000015589	rbm42	92	81.501	ENSMALG00000015720	rbm42	100	81.233	Monopterus_albus
ENSCVAG00000015589	rbm42	100	81.114	ENSONIG00000008029	rbm42	100	80.387	Oreochromis_niloticus
ENSCVAG00000015589	rbm42	100	60.757	ENSORLG00020022507	rbm42	51	75.446	Oryzias_latipes_hni
ENSCVAG00000015589	rbm42	100	78.049	ENSORLG00015000659	rbm42	100	78.293	Oryzias_latipes_hsok
ENSCVAG00000015589	rbm42	60	80.408	ENSOMEG00000014332	rbm42	84	85.268	Oryzias_melastigma
ENSCVAG00000015589	rbm42	100	71.429	ENSPKIG00000015165	rbm42	100	69.928	Paramormyrops_kingsleyae
ENSCVAG00000015589	rbm42	96	62.633	ENSPMGG00000003569	rbm42	100	98.571	Periophthalmus_magnuspinnatus
ENSCVAG00000015589	rbm42	52	53.540	ENSPMAG00000008633	rbm42	100	47.849	Petromyzon_marinus
ENSCVAG00000015589	rbm42	100	88.480	ENSPFOG00000007701	rbm42	100	87.745	Poecilia_formosa
ENSCVAG00000015589	rbm42	100	88.235	ENSPLAG00000009405	rbm42	100	87.500	Poecilia_latipinna
ENSCVAG00000015589	rbm42	100	88.480	ENSPMEG00000010375	rbm42	100	87.745	Poecilia_mexicana
ENSCVAG00000015589	rbm42	100	88.725	ENSPREG00000018102	rbm42	100	87.990	Poecilia_reticulata
ENSCVAG00000015589	rbm42	100	81.707	ENSPNYG00000014460	rbm42	100	80.732	Pundamilia_nyererei
ENSCVAG00000015589	rbm42	100	69.668	ENSPNAG00000009961	rbm42	100	68.957	Pygocentrus_nattereri
ENSCVAG00000015589	rbm42	100	69.718	ENSSFOG00015019227	rbm42	100	69.014	Scleropages_formosus
ENSCVAG00000015589	rbm42	100	77.616	ENSSMAG00000011935	rbm42	100	77.859	Scophthalmus_maximus
ENSCVAG00000015589	rbm42	100	80.732	ENSSDUG00000004033	rbm42	100	81.463	Seriola_dumerili
ENSCVAG00000015589	rbm42	100	69.249	ENSSLDG00000009918	rbm42	100	87.059	Seriola_lalandi_dorsalis
ENSCVAG00000015589	rbm42	100	81.220	ENSSPAG00000019871	rbm42	100	81.951	Stegastes_partitus
ENSCVAG00000015589	rbm42	100	74.146	ENSTRUG00000024586	-	76	73.659	Takifugu_rubripes
ENSCVAG00000015589	rbm42	99	66.140	ENSTNIG00000011669	rbm42	100	63.883	Tetraodon_nigroviridis
ENSCVAG00000015589	rbm42	100	59.624	ENSXETG00000017599	rbm42	100	58.353	Xenopus_tropicalis
ENSCVAG00000015589	rbm42	100	87.990	ENSXMAG00000012827	rbm42	100	87.255	Xiphophorus_maculatus