EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000015826 (Gene tree)
Gene ID: 107096504
Gene Symbol: ptcd1 (1 of many)
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 6286 bases
Position: chrKL653129.1:481921-488206
Accession: 107096504
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000028648	PPR	PF01535.20	4.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000020850	-	2463	XM_015393181	ENSCVAP00000028648	690 (aa)	XP_015248667	UPI00074275FE

Gene Model

Click here to download ENSCVAG00000015826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000015826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000015826	ptcd1	93	98.122	ENSCVAG00000003621	ptcd1	98	98.587

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000015826	ptcd1	81	47.315	ENSG00000106246	PTCD1	83	47.412	Homo_sapiens
ENSCVAG00000015826	ptcd1	81	47.315	ENSG00000248919	ATP5MF-PTCD1	78	47.412	Homo_sapiens
ENSCVAG00000015826	ptcd1	79	70.270	ENSAPOG00000010679	ptcd1	87	70.270	Acanthochromis_polyacanthus
ENSCVAG00000015826	ptcd1	81	48.576	ENSAMEG00000006224	-	78	48.576	Ailuropoda_melanoleuca
ENSCVAG00000015826	ptcd1	92	71.429	ENSACIG00000017861	ptcd1	97	71.429	Amphilophus_citrinellus
ENSCVAG00000015826	ptcd1	88	66.987	ENSAOCG00000022617	ptcd1	94	66.987	Amphiprion_ocellaris
ENSCVAG00000015826	ptcd1	99	65.722	ENSAOCG00000020741	-	99	65.722	Amphiprion_ocellaris
ENSCVAG00000015826	ptcd1	99	65.903	ENSAPEG00000022632	ptcd1	99	65.903	Amphiprion_percula
ENSCVAG00000015826	ptcd1	99	65.912	ENSATEG00000007016	ptcd1	99	66.152	Anabas_testudineus
ENSCVAG00000015826	ptcd1	80	50.874	ENSAPLG00000006862	-	90	50.874	Anas_platyrhynchos
ENSCVAG00000015826	ptcd1	88	47.806	ENSACAG00000012871	-	83	47.806	Anolis_carolinensis
ENSCVAG00000015826	ptcd1	81	47.245	ENSANAG00000035790	-	86	47.342	Aotus_nancymaae
ENSCVAG00000015826	ptcd1	98	69.330	ENSACLG00000002824	ptcd1	99	69.330	Astatotilapia_calliptera
ENSCVAG00000015826	ptcd1	81	53.607	ENSAMXG00000037292	ptcd1	85	53.934	Astyanax_mexicanus
ENSCVAG00000015826	ptcd1	83	47.455	ENSBTAG00000020440	-	75	47.947	Bos_taurus
ENSCVAG00000015826	ptcd1	81	47.651	ENSCJAG00000015815	-	84	47.746	Callithrix_jacchus
ENSCVAG00000015826	ptcd1	81	48.658	ENSCAFG00000015055	-	78	48.658	Canis_familiaris
ENSCVAG00000015826	ptcd1	81	48.658	ENSCAFG00020014480	-	78	48.658	Canis_lupus_dingo
ENSCVAG00000015826	ptcd1	83	47.720	ENSCHIG00000027000	-	84	47.883	Capra_hircus
ENSCVAG00000015826	ptcd1	81	46.578	ENSTSYG00000029495	-	84	46.678	Carlito_syrichta
ENSCVAG00000015826	ptcd1	83	46.875	ENSCAPG00000014660	-	91	46.875	Cavia_aperea
ENSCVAG00000015826	ptcd1	83	47.533	ENSCPOG00000001780	-	85	47.533	Cavia_porcellus
ENSCVAG00000015826	ptcd1	81	47.667	ENSCCAG00000034025	-	84	47.761	Cebus_capucinus
ENSCVAG00000015826	ptcd1	81	48.639	ENSCATG00000040859	-	83	49.239	Cercocebus_atys
ENSCVAG00000015826	ptcd1	81	48.562	ENSCLAG00000006354	-	83	48.822	Chinchilla_lanigera
ENSCVAG00000015826	ptcd1	77	47.857	ENSCSAG00000017794	-	82	48.490	Chlorocebus_sabaeus
ENSCVAG00000015826	ptcd1	86	46.417	ENSCPBG00000020866	-	85	47.031	Chrysemys_picta_bellii
ENSCVAG00000015826	ptcd1	81	47.078	ENSCANG00000023441	-	84	47.746	Colobus_angolensis_palliatus
ENSCVAG00000015826	ptcd1	86	46.228	ENSCGRG00001023686	Ptcd1	88	46.388	Cricetulus_griseus_chok1gshd
ENSCVAG00000015826	ptcd1	86	46.228	ENSCGRG00000015031	Ptcd1	88	46.388	Cricetulus_griseus_crigri
ENSCVAG00000015826	ptcd1	95	60.499	ENSCSEG00000002378	ptcd1	96	61.087	Cynoglossus_semilaevis
ENSCVAG00000015826	ptcd1	88	49.924	ENSDARG00000076176	ptcd1	93	49.924	Danio_rerio
ENSCVAG00000015826	ptcd1	86	46.835	ENSDNOG00000009957	-	90	46.154	Dasypus_novemcinctus
ENSCVAG00000015826	ptcd1	83	47.213	ENSDORG00000000740	Ptcd1	87	47.308	Dipodomys_ordii
ENSCVAG00000015826	ptcd1	80	38.915	ENSEBUG00000014515	ptcd1	93	39.138	Eptatretus_burgeri
ENSCVAG00000015826	ptcd1	81	49.069	ENSEASG00005002480	-	83	49.158	Equus_asinus_asinus
ENSCVAG00000015826	ptcd1	81	49.408	ENSECAG00000016617	-	83	49.666	Equus_caballus
ENSCVAG00000015826	ptcd1	89	54.532	ENSELUG00000016517	ptcd1	89	54.532	Esox_lucius
ENSCVAG00000015826	ptcd1	85	46.411	ENSFCAG00000015069	-	88	46.252	Felis_catus
ENSCVAG00000015826	ptcd1	82	48.864	ENSFALG00000013803	-	85	49.188	Ficedula_albicollis
ENSCVAG00000015826	ptcd1	81	48.571	ENSFDAG00000006393	-	83	48.822	Fukomys_damarensis
ENSCVAG00000015826	ptcd1	81	81.932	ENSFHEG00000012491	ptcd1	97	81.932	Fundulus_heteroclitus
ENSCVAG00000015826	ptcd1	88	62.420	ENSGMOG00000007639	ptcd1	99	62.420	Gadus_morhua
ENSCVAG00000015826	ptcd1	80	48.409	ENSGALG00000004711	-	85	48.124	Gallus_gallus
ENSCVAG00000015826	ptcd1	99	75.000	ENSGAFG00000013175	ptcd1	99	75.287	Gambusia_affinis
ENSCVAG00000015826	ptcd1	89	71.451	ENSGACG00000016607	ptcd1	98	71.451	Gasterosteus_aculeatus
ENSCVAG00000015826	ptcd1	78	48.841	ENSGAGG00000021832	-	85	48.797	Gopherus_agassizii
ENSCVAG00000015826	ptcd1	81	46.891	ENSGGOG00000015123	-	83	46.990	Gorilla_gorilla
ENSCVAG00000015826	ptcd1	99	68.750	ENSHBUG00000018275	ptcd1	99	68.750	Haplochromis_burtoni
ENSCVAG00000015826	ptcd1	89	45.732	ENSHGLG00000017621	-	88	47.687	Heterocephalus_glaber_female
ENSCVAG00000015826	ptcd1	89	45.732	ENSHGLG00100007218	-	88	47.687	Heterocephalus_glaber_male
ENSCVAG00000015826	ptcd1	97	57.500	ENSHCOG00000010784	ptcd1	98	58.884	Hippocampus_comes
ENSCVAG00000015826	ptcd1	85	47.673	ENSSTOG00000001682	-	87	47.833	Ictidomys_tridecemlineatus
ENSCVAG00000015826	ptcd1	83	48.440	ENSJJAG00000000319	Ptcd1	86	48.026	Jaculus_jaculus
ENSCVAG00000015826	ptcd1	97	69.154	ENSKMAG00000008708	ptcd1	99	69.154	Kryptolebias_marmoratus
ENSCVAG00000015826	ptcd1	99	64.404	ENSLBEG00000008061	ptcd1	99	64.820	Labrus_bergylta
ENSCVAG00000015826	ptcd1	81	50.947	ENSLACG00000011172	ptcd1	82	50.947	Latimeria_chalumnae
ENSCVAG00000015826	ptcd1	84	52.236	ENSLOCG00000004833	ptcd1	95	51.159	Lepisosteus_oculatus
ENSCVAG00000015826	ptcd1	83	46.809	ENSLAFG00000002588	-	86	46.809	Loxodonta_africana
ENSCVAG00000015826	ptcd1	81	48.639	ENSMFAG00000041324	-	83	49.239	Macaca_fascicularis
ENSCVAG00000015826	ptcd1	81	48.639	ENSMMUG00000030408	-	83	49.239	Macaca_mulatta
ENSCVAG00000015826	ptcd1	81	48.810	ENSMNEG00000043786	-	83	49.408	Macaca_nemestrina
ENSCVAG00000015826	ptcd1	81	35.951	ENSMLEG00000031179	-	81	38.542	Mandrillus_leucophaeus
ENSCVAG00000015826	ptcd1	90	70.300	ENSMAMG00000007623	ptcd1	87	70.300	Mastacembelus_armatus
ENSCVAG00000015826	ptcd1	98	69.187	ENSMZEG00005012722	ptcd1	99	69.187	Maylandia_zebra
ENSCVAG00000015826	ptcd1	82	48.604	ENSMGAG00000004211	-	74	50.351	Meleagris_gallopavo
ENSCVAG00000015826	ptcd1	82	46.333	ENSMICG00000017428	-	84	46.578	Microcebus_murinus
ENSCVAG00000015826	ptcd1	99	66.104	ENSMMOG00000020243	ptcd1	99	66.292	Mola_mola
ENSCVAG00000015826	ptcd1	85	46.105	ENSMODG00000001350	-	85	46.105	Monodelphis_domestica
ENSCVAG00000015826	ptcd1	98	65.385	ENSMALG00000018442	ptcd1	99	65.352	Monopterus_albus
ENSCVAG00000015826	ptcd1	86	46.709	MGP_CAROLIEiJ_G0028011	Ptcd1	86	47.603	Mus_caroli
ENSCVAG00000015826	ptcd1	90	45.137	ENSMUSG00000029624	Ptcd1	90	46.311	Mus_musculus
ENSCVAG00000015826	ptcd1	85	46.411	MGP_PahariEiJ_G0024580	Ptcd1	88	46.411	Mus_pahari
ENSCVAG00000015826	ptcd1	90	45.216	MGP_SPRETEiJ_G0029012	Ptcd1	90	46.082	Mus_spretus
ENSCVAG00000015826	ptcd1	81	48.911	ENSMPUG00000016518	-	83	48.911	Mustela_putorius_furo
ENSCVAG00000015826	ptcd1	81	48.653	ENSMLUG00000010994	-	78	49.079	Myotis_lucifugus
ENSCVAG00000015826	ptcd1	98	66.857	ENSNBRG00000010079	ptcd1	99	68.576	Neolamprologus_brichardi
ENSCVAG00000015826	ptcd1	72	47.801	ENSNLEG00000011060	-	87	47.801	Nomascus_leucogenys
ENSCVAG00000015826	ptcd1	85	46.743	ENSMEUG00000006930	-	87	46.743	Notamacropus_eugenii
ENSCVAG00000015826	ptcd1	71	63.478	ENSOPRG00000013647	-	73	65.217	Ochotona_princeps
ENSCVAG00000015826	ptcd1	86	71.429	ENSONIG00000003168	ptcd1	100	71.429	Oreochromis_niloticus
ENSCVAG00000015826	ptcd1	79	47.028	ENSOANG00000007728	-	74	47.028	Ornithorhynchus_anatinus
ENSCVAG00000015826	ptcd1	83	48.099	ENSOCUG00000010584	-	84	48.099	Oryctolagus_cuniculus
ENSCVAG00000015826	ptcd1	91	70.597	ENSORLG00000009275	ptcd1	94	70.597	Oryzias_latipes
ENSCVAG00000015826	ptcd1	93	70.031	ENSORLG00020000988	ptcd1	97	70.031	Oryzias_latipes_hni
ENSCVAG00000015826	ptcd1	93	69.419	ENSORLG00015010557	ptcd1	97	69.419	Oryzias_latipes_hsok
ENSCVAG00000015826	ptcd1	94	68.939	ENSOMEG00000020627	ptcd1	98	68.939	Oryzias_melastigma
ENSCVAG00000015826	ptcd1	83	45.964	ENSOGAG00000010877	-	86	46.546	Otolemur_garnettii
ENSCVAG00000015826	ptcd1	83	44.122	ENSOARG00000018676	-	85	44.283	Ovis_aries
ENSCVAG00000015826	ptcd1	81	47.059	ENSPPAG00000036024	-	83	46.990	Pan_paniscus
ENSCVAG00000015826	ptcd1	81	47.993	ENSPPRG00000003478	-	84	47.993	Panthera_pardus
ENSCVAG00000015826	ptcd1	83	46.305	ENSPTRG00000019452	-	85	46.242	Pan_troglodytes
ENSCVAG00000015826	ptcd1	81	48.552	ENSPANG00000016730	-	83	49.153	Papio_anubis
ENSCVAG00000015826	ptcd1	81	52.151	ENSPKIG00000014215	ptcd1	84	52.324	Paramormyrops_kingsleyae
ENSCVAG00000015826	ptcd1	82	46.284	ENSPSIG00000011184	-	99	47.128	Pelodiscus_sinensis
ENSCVAG00000015826	ptcd1	72	40.000	ENSPMAG00000009667	ptcd1	100	40.000	Petromyzon_marinus
ENSCVAG00000015826	ptcd1	85	45.008	ENSPCIG00000024778	-	88	44.462	Phascolarctos_cinereus
ENSCVAG00000015826	ptcd1	98	73.926	ENSPFOG00000004458	ptcd1	99	74.499	Poecilia_formosa
ENSCVAG00000015826	ptcd1	98	74.180	ENSPLAG00000011051	ptcd1	99	74.893	Poecilia_latipinna
ENSCVAG00000015826	ptcd1	99	74.646	ENSPMEG00000020547	ptcd1	99	75.000	Poecilia_mexicana
ENSCVAG00000015826	ptcd1	99	74.392	ENSPREG00000000059	ptcd1	99	74.821	Poecilia_reticulata
ENSCVAG00000015826	ptcd1	81	46.656	ENSPPYG00000017377	-	88	46.656	Pongo_abelii
ENSCVAG00000015826	ptcd1	71	62.393	ENSPCAG00000001852	-	80	62.393	Procavia_capensis
ENSCVAG00000015826	ptcd1	83	45.964	ENSPCOG00000018596	-	85	46.066	Propithecus_coquereli
ENSCVAG00000015826	ptcd1	59	52.412	ENSPVAG00000007529	-	64	51.447	Pteropus_vampyrus
ENSCVAG00000015826	ptcd1	99	68.310	ENSPNYG00000019993	ptcd1	99	68.310	Pundamilia_nyererei
ENSCVAG00000015826	ptcd1	83	52.736	ENSPNAG00000014931	ptcd1	90	51.510	Pygocentrus_nattereri
ENSCVAG00000015826	ptcd1	86	47.125	ENSRNOG00000000987	Ptcd1	89	47.727	Rattus_norvegicus
ENSCVAG00000015826	ptcd1	81	47.138	ENSRBIG00000043393	-	84	47.811	Rhinopithecus_bieti
ENSCVAG00000015826	ptcd1	81	48.223	ENSRROG00000036420	-	84	48.900	Rhinopithecus_roxellana
ENSCVAG00000015826	ptcd1	81	47.571	ENSSBOG00000024114	-	84	47.667	Saimiri_boliviensis_boliviensis
ENSCVAG00000015826	ptcd1	86	47.334	ENSSHAG00000011376	-	93	47.334	Sarcophilus_harrisii
ENSCVAG00000015826	ptcd1	85	53.226	ENSSFOG00015007909	ptcd1	84	53.485	Scleropages_formosus
ENSCVAG00000015826	ptcd1	89	67.353	ENSSMAG00000000218	ptcd1	99	67.512	Scophthalmus_maximus
ENSCVAG00000015826	ptcd1	95	65.552	ENSSDUG00000015671	ptcd1	98	66.667	Seriola_dumerili
ENSCVAG00000015826	ptcd1	91	67.825	ENSSLDG00000014261	ptcd1	95	67.825	Seriola_lalandi_dorsalis
ENSCVAG00000015826	ptcd1	83	47.720	ENSSPUG00000003540	-	83	47.805	Sphenodon_punctatus
ENSCVAG00000015826	ptcd1	98	68.563	ENSSPAG00000011049	ptcd1	97	68.990	Stegastes_partitus
ENSCVAG00000015826	ptcd1	83	47.974	ENSSSCG00000007622	-	90	47.974	Sus_scrofa
ENSCVAG00000015826	ptcd1	80	50.439	ENSTGUG00000007563	-	94	50.963	Taeniopygia_guttata
ENSCVAG00000015826	ptcd1	98	61.952	ENSTRUG00000013471	ptcd1	98	61.777	Takifugu_rubripes
ENSCVAG00000015826	ptcd1	95	63.462	ENSTNIG00000008271	ptcd1	99	63.462	Tetraodon_nigroviridis
ENSCVAG00000015826	ptcd1	83	47.496	ENSTBEG00000011021	-	86	47.496	Tupaia_belangeri
ENSCVAG00000015826	ptcd1	81	47.871	ENSTTRG00000003006	-	84	47.871	Tursiops_truncatus
ENSCVAG00000015826	ptcd1	81	48.241	ENSUAMG00000008049	-	83	47.906	Ursus_americanus
ENSCVAG00000015826	ptcd1	81	48.993	ENSVVUG00000008836	-	84	48.993	Vulpes_vulpes
ENSCVAG00000015826	ptcd1	87	48.006	ENSXETG00000009891	ptcd1	91	48.006	Xenopus_tropicalis
ENSCVAG00000015826	ptcd1	99	74.964	ENSXMAG00000015540	ptcd1	99	75.676	Xiphophorus_maculatus