EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000015952 (Gene tree)
Gene ID: 107090257
Gene Symbol: rbm38
Alias: fi25e12|rnpc1|wu:fi25e12|zgc:92336
Full Name: RNA-binding protein 38-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 23759 bases
Position: chrKL652787.1:679845-703603
Accession: 107090257
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000013447	RRM_1	PF00076.22	3.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000020995	-	1815	XM_015383540	ENSCVAP00000013447	250 (aa)	XP_015239026	UPI0007427874

Gene Model

Click here to download ENSCVAG00000015952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000015952's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000015952	rbm38	62	67.702	ENSCVAG00000011805	rbm24b	83	60.500
ENSCVAG00000015952	rbm38	98	62.948	ENSCVAG00000005472	-	99	62.249
ENSCVAG00000015952	rbm38	75	60.000	ENSCVAG00000020675	rbm24a	99	55.242

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000015952	rbm38	91	59.657	ENSG00000132819	RBM38	90	83.784	Homo_sapiens
ENSCVAG00000015952	rbm38	100	87.600	ENSAPOG00000003301	rbm38	100	87.600	Acanthochromis_polyacanthus
ENSCVAG00000015952	rbm38	98	61.905	ENSAPOG00000009939	-	99	62.249	Acanthochromis_polyacanthus
ENSCVAG00000015952	rbm38	98	61.660	ENSACIG00000012502	-	100	80.342	Amphilophus_citrinellus
ENSCVAG00000015952	rbm38	100	83.600	ENSACIG00000000010	rbm38	100	83.600	Amphilophus_citrinellus
ENSCVAG00000015952	rbm38	100	88.000	ENSAOCG00000013497	-	100	88.000	Amphiprion_ocellaris
ENSCVAG00000015952	rbm38	95	62.083	ENSAOCG00000012559	RBM38	99	61.411	Amphiprion_ocellaris
ENSCVAG00000015952	rbm38	98	61.111	ENSAPEG00000023581	-	99	61.044	Amphiprion_percula
ENSCVAG00000015952	rbm38	100	88.000	ENSAPEG00000013137	rbm38	100	88.000	Amphiprion_percula
ENSCVAG00000015952	rbm38	98	61.111	ENSATEG00000016710	-	99	61.044	Anabas_testudineus
ENSCVAG00000015952	rbm38	100	83.200	ENSATEG00000016366	rbm38	100	83.200	Anabas_testudineus
ENSCVAG00000015952	rbm38	91	57.082	ENSACAG00000016238	RBM38	88	55.603	Anolis_carolinensis
ENSCVAG00000015952	rbm38	91	59.227	ENSANAG00000031959	RBM38	76	91.304	Aotus_nancymaae
ENSCVAG00000015952	rbm38	98	61.811	ENSACLG00000019514	-	99	59.438	Astatotilapia_calliptera
ENSCVAG00000015952	rbm38	94	54.701	ENSAMXG00000038120	rbm38	82	60.302	Astyanax_mexicanus
ENSCVAG00000015952	rbm38	98	60.000	ENSAMXG00000015601	-	99	60.081	Astyanax_mexicanus
ENSCVAG00000015952	rbm38	91	60.515	ENSBTAG00000008105	RBM38	88	59.914	Bos_taurus
ENSCVAG00000015952	rbm38	60	61.842	WBGene00006321	sup-12	78	72.269	Caenorhabditis_elegans
ENSCVAG00000015952	rbm38	91	59.227	ENSCJAG00000019139	RBM38	76	91.304	Callithrix_jacchus
ENSCVAG00000015952	rbm38	91	59.227	ENSCAFG00020021943	RBM38	88	58.621	Canis_lupus_dingo
ENSCVAG00000015952	rbm38	91	59.227	ENSCHIG00000002609	RBM38	88	58.190	Capra_hircus
ENSCVAG00000015952	rbm38	91	60.345	ENSCPOG00000012781	RBM38	89	59.227	Cavia_porcellus
ENSCVAG00000015952	rbm38	91	59.227	ENSCCAG00000036872	RBM38	76	91.304	Cebus_capucinus
ENSCVAG00000015952	rbm38	91	59.227	ENSCATG00000032133	RBM38	76	91.304	Cercocebus_atys
ENSCVAG00000015952	rbm38	91	60.515	ENSCLAG00000005906	RBM38	92	59.657	Chinchilla_lanigera
ENSCVAG00000015952	rbm38	91	59.227	ENSCSAG00000015503	RBM38	88	58.190	Chlorocebus_sabaeus
ENSCVAG00000015952	rbm38	92	57.265	ENSCPBG00000024059	RBM38	85	64.550	Chrysemys_picta_bellii
ENSCVAG00000015952	rbm38	60	60.510	ENSCSAVG00000001132	-	58	60.510	Ciona_savignyi
ENSCVAG00000015952	rbm38	91	45.415	ENSCANG00000030105	-	77	46.087	Colobus_angolensis_palliatus
ENSCVAG00000015952	rbm38	72	65.574	ENSCGRG00001012928	Rbm38	89	58.621	Cricetulus_griseus_chok1gshd
ENSCVAG00000015952	rbm38	84	65.550	ENSCSEG00000020943	rbm38	63	68.421	Cynoglossus_semilaevis
ENSCVAG00000015952	rbm38	98	63.347	ENSCSEG00000004701	-	99	61.355	Cynoglossus_semilaevis
ENSCVAG00000015952	rbm38	97	62.753	ENSDARG00000058818	rbm38	82	69.500	Danio_rerio
ENSCVAG00000015952	rbm38	91	56.710	ENSDNOG00000032004	RBM38	98	56.522	Dasypus_novemcinctus
ENSCVAG00000015952	rbm38	91	57.940	ENSECAG00000007700	RBM38	88	57.328	Equus_caballus
ENSCVAG00000015952	rbm38	91	58.798	ENSEEUG00000013489	RBM38	89	57.511	Erinaceus_europaeus
ENSCVAG00000015952	rbm38	92	69.130	ENSELUG00000000585	-	100	68.261	Esox_lucius
ENSCVAG00000015952	rbm38	98	60.236	ENSELUG00000005849	-	99	58.498	Esox_lucius
ENSCVAG00000015952	rbm38	91	57.082	ENSFCAG00000042916	RBM38	76	90.217	Felis_catus
ENSCVAG00000015952	rbm38	68	68.571	ENSFALG00000010805	RBM38	88	67.816	Ficedula_albicollis
ENSCVAG00000015952	rbm38	100	91.633	ENSFHEG00000017748	rbm38	100	91.633	Fundulus_heteroclitus
ENSCVAG00000015952	rbm38	98	61.446	ENSFHEG00000006160	-	99	61.446	Fundulus_heteroclitus
ENSCVAG00000015952	rbm38	72	68.306	ENSGMOG00000016655	-	97	71.038	Gadus_morhua
ENSCVAG00000015952	rbm38	92	55.319	ENSGALG00000026081	RBM38	85	63.298	Gallus_gallus
ENSCVAG00000015952	rbm38	93	73.820	ENSGACG00000015224	rbm38	100	73.820	Gasterosteus_aculeatus
ENSCVAG00000015952	rbm38	93	58.228	ENSGACG00000009873	-	100	57.384	Gasterosteus_aculeatus
ENSCVAG00000015952	rbm38	92	57.265	ENSGAGG00000001187	RBM38	85	64.550	Gopherus_agassizii
ENSCVAG00000015952	rbm38	98	61.811	ENSHBUG00000011778	-	99	59.438	Haplochromis_burtoni
ENSCVAG00000015952	rbm38	100	84.000	ENSHBUG00000012058	rbm38	100	84.000	Haplochromis_burtoni
ENSCVAG00000015952	rbm38	91	60.515	ENSHGLG00000015077	RBM38	89	59.657	Heterocephalus_glaber_female
ENSCVAG00000015952	rbm38	100	60.558	ENSHCOG00000019040	rbm38	100	60.558	Hippocampus_comes
ENSCVAG00000015952	rbm38	81	65.854	ENSHCOG00000005622	-	58	67.317	Hippocampus_comes
ENSCVAG00000015952	rbm38	94	60.417	ENSIPUG00000019349	-	96	59.167	Ictalurus_punctatus
ENSCVAG00000015952	rbm38	91	73.077	ENSKMAG00000012402	rbm38	98	73.077	Kryptolebias_marmoratus
ENSCVAG00000015952	rbm38	100	82.800	ENSLBEG00000018878	rbm38	100	82.800	Labrus_bergylta
ENSCVAG00000015952	rbm38	98	60.870	ENSLBEG00000016163	RBM38	99	59.438	Labrus_bergylta
ENSCVAG00000015952	rbm38	98	60.081	ENSLOCG00000003456	rbm38	99	59.756	Lepisosteus_oculatus
ENSCVAG00000015952	rbm38	91	59.227	ENSMFAG00000043808	RBM38	76	91.304	Macaca_fascicularis
ENSCVAG00000015952	rbm38	91	59.227	ENSMMUG00000031391	RBM38	76	91.304	Macaca_mulatta
ENSCVAG00000015952	rbm38	91	59.227	ENSMNEG00000034683	RBM38	76	91.304	Macaca_nemestrina
ENSCVAG00000015952	rbm38	100	85.200	ENSMAMG00000024135	rbm38	100	85.200	Mastacembelus_armatus
ENSCVAG00000015952	rbm38	98	62.151	ENSMAMG00000020499	RBM38	99	62.097	Mastacembelus_armatus
ENSCVAG00000015952	rbm38	100	84.000	ENSMZEG00005026036	rbm38	100	84.000	Maylandia_zebra
ENSCVAG00000015952	rbm38	98	61.811	ENSMZEG00005000849	-	99	59.438	Maylandia_zebra
ENSCVAG00000015952	rbm38	91	59.227	ENSMAUG00000021211	Rbm38	89	59.483	Mesocricetus_auratus
ENSCVAG00000015952	rbm38	91	59.052	ENSMICG00000038011	RBM38	98	57.759	Microcebus_murinus
ENSCVAG00000015952	rbm38	91	59.227	ENSMOCG00000008715	Rbm38	89	59.483	Microtus_ochrogaster
ENSCVAG00000015952	rbm38	98	60.317	ENSMMOG00000020051	-	99	60.643	Mola_mola
ENSCVAG00000015952	rbm38	92	55.319	ENSMODG00000016458	RBM38	91	55.745	Monodelphis_domestica
ENSCVAG00000015952	rbm38	75	70.000	ENSMALG00000004680	RBM38	71	70.000	Monopterus_albus
ENSCVAG00000015952	rbm38	100	69.600	ENSMALG00000022327	rbm38	100	69.600	Monopterus_albus
ENSCVAG00000015952	rbm38	91	59.657	MGP_CAROLIEiJ_G0024745	Rbm38	89	59.052	Mus_caroli
ENSCVAG00000015952	rbm38	91	59.657	ENSMUSG00000027510	Rbm38	89	59.052	Mus_musculus
ENSCVAG00000015952	rbm38	91	59.657	MGP_PahariEiJ_G0026186	Rbm38	89	59.052	Mus_pahari
ENSCVAG00000015952	rbm38	91	59.657	MGP_SPRETEiJ_G0025665	Rbm38	89	59.052	Mus_spretus
ENSCVAG00000015952	rbm38	72	65.934	ENSMPUG00000006518	RBM38	89	65.934	Mustela_putorius_furo
ENSCVAG00000015952	rbm38	91	58.621	ENSMLUG00000011140	RBM38	98	56.897	Myotis_lucifugus
ENSCVAG00000015952	rbm38	100	84.400	ENSNBRG00000022685	rbm38	100	84.400	Neolamprologus_brichardi
ENSCVAG00000015952	rbm38	98	61.417	ENSNBRG00000022545	-	99	57.358	Neolamprologus_brichardi
ENSCVAG00000015952	rbm38	91	61.373	ENSODEG00000007980	RBM38	89	60.515	Octodon_degus
ENSCVAG00000015952	rbm38	98	84.490	ENSONIG00000017073	rbm38	100	84.490	Oreochromis_niloticus
ENSCVAG00000015952	rbm38	98	61.265	ENSONIG00000020324	-	99	57.197	Oreochromis_niloticus
ENSCVAG00000015952	rbm38	77	62.245	ENSOANG00000009259	RBM38	70	64.324	Ornithorhynchus_anatinus
ENSCVAG00000015952	rbm38	100	80.478	ENSORLG00000012154	rbm38	100	78.088	Oryzias_latipes
ENSCVAG00000015952	rbm38	98	58.661	ENSORLG00000027180	-	99	59.036	Oryzias_latipes
ENSCVAG00000015952	rbm38	98	58.661	ENSORLG00020020751	-	99	59.036	Oryzias_latipes_hni
ENSCVAG00000015952	rbm38	100	81.275	ENSORLG00020017871	rbm38	100	78.088	Oryzias_latipes_hni
ENSCVAG00000015952	rbm38	100	81.275	ENSORLG00015012606	rbm38	100	78.088	Oryzias_latipes_hsok
ENSCVAG00000015952	rbm38	98	60.079	ENSORLG00015017040	-	99	59.438	Oryzias_latipes_hsok
ENSCVAG00000015952	rbm38	98	59.127	ENSOMEG00000023912	-	99	59.438	Oryzias_melastigma
ENSCVAG00000015952	rbm38	100	81.275	ENSOMEG00000006805	rbm38	100	78.088	Oryzias_melastigma
ENSCVAG00000015952	rbm38	91	60.086	ENSOGAG00000029136	RBM38	88	59.227	Otolemur_garnettii
ENSCVAG00000015952	rbm38	91	57.082	ENSPPRG00000009507	RBM38	76	90.217	Panthera_pardus
ENSCVAG00000015952	rbm38	76	64.433	ENSPTRG00000013661	RBM38	76	91.304	Pan_troglodytes
ENSCVAG00000015952	rbm38	95	48.148	ENSPANG00000033127	-	93	47.131	Papio_anubis
ENSCVAG00000015952	rbm38	91	59.227	ENSPANG00000020919	-	76	91.304	Papio_anubis
ENSCVAG00000015952	rbm38	98	55.645	ENSPKIG00000018122	-	95	81.081	Paramormyrops_kingsleyae
ENSCVAG00000015952	rbm38	98	58.000	ENSPKIG00000025417	rbm38	99	58.000	Paramormyrops_kingsleyae
ENSCVAG00000015952	rbm38	92	55.983	ENSPSIG00000011649	RBM38	77	62.903	Pelodiscus_sinensis
ENSCVAG00000015952	rbm38	100	72.510	ENSPMGG00000011343	rbm38	100	75.299	Periophthalmus_magnuspinnatus
ENSCVAG00000015952	rbm38	98	59.843	ENSPMGG00000017094	-	99	58.000	Periophthalmus_magnuspinnatus
ENSCVAG00000015952	rbm38	92	56.652	ENSPCIG00000013648	RBM38	91	56.170	Phascolarctos_cinereus
ENSCVAG00000015952	rbm38	100	92.520	ENSPFOG00000011658	rbm38	100	92.520	Poecilia_formosa
ENSCVAG00000015952	rbm38	98	62.109	ENSPLAG00000002500	-	99	61.446	Poecilia_latipinna
ENSCVAG00000015952	rbm38	100	92.126	ENSPLAG00000005218	rbm38	100	92.126	Poecilia_latipinna
ENSCVAG00000015952	rbm38	100	92.126	ENSPMEG00000015770	rbm38	100	92.126	Poecilia_mexicana
ENSCVAG00000015952	rbm38	100	92.126	ENSPREG00000007398	rbm38	100	92.126	Poecilia_reticulata
ENSCVAG00000015952	rbm38	91	59.227	ENSPCOG00000026201	RBM38	75	91.304	Propithecus_coquereli
ENSCVAG00000015952	rbm38	72	40.437	ENSPVAG00000006457	RBM38	89	38.197	Pteropus_vampyrus
ENSCVAG00000015952	rbm38	100	83.600	ENSPNYG00000021373	rbm38	100	83.600	Pundamilia_nyererei
ENSCVAG00000015952	rbm38	98	61.811	ENSPNYG00000019727	-	100	80.342	Pundamilia_nyererei
ENSCVAG00000015952	rbm38	95	59.167	ENSPNAG00000010596	rbm38	83	65.174	Pygocentrus_nattereri
ENSCVAG00000015952	rbm38	98	60.800	ENSPNAG00000015123	-	88	81.579	Pygocentrus_nattereri
ENSCVAG00000015952	rbm38	91	60.086	ENSRNOG00000006420	Rbm38	89	58.298	Rattus_norvegicus
ENSCVAG00000015952	rbm38	92	52.381	ENSRROG00000036388	-	88	52.155	Rhinopithecus_roxellana
ENSCVAG00000015952	rbm38	91	58.621	ENSSBOG00000031053	RBM38	86	91.304	Saimiri_boliviensis_boliviensis
ENSCVAG00000015952	rbm38	98	54.800	ENSSFOG00015004453	rbm38	84	63.184	Scleropages_formosus
ENSCVAG00000015952	rbm38	100	84.400	ENSSDUG00000022611	rbm38	100	84.400	Seriola_dumerili
ENSCVAG00000015952	rbm38	98	61.111	ENSSDUG00000021082	RBM38	99	61.446	Seriola_dumerili
ENSCVAG00000015952	rbm38	100	84.400	ENSSLDG00000010845	rbm38	100	84.400	Seriola_lalandi_dorsalis
ENSCVAG00000015952	rbm38	98	61.111	ENSSLDG00000011778	RBM38	99	61.446	Seriola_lalandi_dorsalis
ENSCVAG00000015952	rbm38	100	88.000	ENSSPAG00000011113	rbm38	100	88.000	Stegastes_partitus
ENSCVAG00000015952	rbm38	98	62.302	ENSSPAG00000020989	RBM38	99	61.847	Stegastes_partitus
ENSCVAG00000015952	rbm38	91	59.227	ENSSSCG00000007504	RBM38	88	58.621	Sus_scrofa
ENSCVAG00000015952	rbm38	98	60.558	ENSTRUG00000019869	-	99	59.036	Takifugu_rubripes
ENSCVAG00000015952	rbm38	100	77.200	ENSTRUG00000024954	rbm38	100	78.000	Takifugu_rubripes
ENSCVAG00000015952	rbm38	94	60.924	ENSTNIG00000007093	-	100	59.833	Tetraodon_nigroviridis
ENSCVAG00000015952	rbm38	74	64.894	ENSUAMG00000019780	RBM38	88	56.897	Ursus_americanus
ENSCVAG00000015952	rbm38	91	59.227	ENSVVUG00000017246	RBM38	88	58.621	Vulpes_vulpes
ENSCVAG00000015952	rbm38	76	64.249	ENSXETG00000011268	rbm38	98	56.170	Xenopus_tropicalis
ENSCVAG00000015952	rbm38	82	54.751	ENSXCOG00000017324	-	61	75.373	Xiphophorus_couchianus
ENSCVAG00000015952	rbm38	100	94.800	ENSXMAG00000023662	rbm38	100	94.800	Xiphophorus_maculatus