EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000016346 (Gene tree)
Gene ID: 107099940
Gene Symbol: -
Alias: im:7148349|si:ch211-125c5.1
Full Name: spen family transcriptional repressor
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 32602 bases
Position: chrKL653421.1:70571-103172
Accession: 107099940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000013791	RRM_5	PF13893.6	2.5e-07	1	2
ENSCVAP00000013791	RRM_5	PF13893.6	2.5e-07	2	2
ENSCVAP00000013791	RRM_1	PF00076.22	5e-40	1	3
ENSCVAP00000013791	RRM_1	PF00076.22	5e-40	2	3
ENSCVAP00000013791	RRM_1	PF00076.22	5e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000021448	-	12959	XM_015398268	ENSCVAP00000013791	3529 (aa)	XP_015253754	UPI000742B492

Gene Model

Click here to download ENSCVAG00000016346's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000016346's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000016346	-	97	83.432	ENSCVAG00000009075	si:ch1073-335m2.2	100	83.432

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000016346	-	90	48.091	ENSG00000065526	SPEN	85	90.079	Homo_sapiens
ENSCVAG00000016346	-	100	77.822	ENSAPOG00000009853	-	87	93.855	Acanthochromis_polyacanthus
ENSCVAG00000016346	-	97	83.432	ENSAPOG00000011411	si:ch1073-335m2.2	100	83.432	Acanthochromis_polyacanthus
ENSCVAG00000016346	-	69	56.789	ENSAMEG00000011817	SPEN	96	45.676	Ailuropoda_melanoleuca
ENSCVAG00000016346	-	100	77.878	ENSAOCG00000014505	-	100	77.822	Amphiprion_ocellaris
ENSCVAG00000016346	-	86	77.444	ENSAOCG00000008077	si:ch1073-335m2.2	99	77.444	Amphiprion_ocellaris
ENSCVAG00000016346	-	95	83.432	ENSAPEG00000013515	si:ch1073-335m2.2	100	83.432	Amphiprion_percula
ENSCVAG00000016346	-	100	77.822	ENSAPEG00000010288	-	100	77.765	Amphiprion_percula
ENSCVAG00000016346	-	100	75.512	ENSATEG00000005627	-	100	75.344	Anabas_testudineus
ENSCVAG00000016346	-	97	81.871	ENSATEG00000007674	si:ch1073-335m2.2	99	81.871	Anabas_testudineus
ENSCVAG00000016346	-	95	55.111	ENSAPLG00000012618	SPEN	95	83.721	Anas_platyrhynchos
ENSCVAG00000016346	-	93	46.431	ENSACAG00000013761	SPEN	100	43.844	Anolis_carolinensis
ENSCVAG00000016346	-	89	47.885	ENSANAG00000034428	SPEN	89	47.762	Aotus_nancymaae
ENSCVAG00000016346	-	100	75.295	ENSACLG00000016922	-	100	75.352	Astatotilapia_calliptera
ENSCVAG00000016346	-	88	74.372	ENSACLG00000021433	si:ch1073-335m2.2	100	83.432	Astatotilapia_calliptera
ENSCVAG00000016346	-	100	53.271	ENSAMXG00000012485	spen	100	53.655	Astyanax_mexicanus
ENSCVAG00000016346	-	99	45.344	ENSBTAG00000018729	SPEN	97	44.910	Bos_taurus
ENSCVAG00000016346	-	88	49.261	ENSCJAG00000008527	SPEN	87	48.384	Callithrix_jacchus
ENSCVAG00000016346	-	86	52.409	ENSCAFG00000016132	-	91	51.672	Canis_familiaris
ENSCVAG00000016346	-	89	49.077	ENSCHIG00000025070	SPEN	97	44.941	Capra_hircus
ENSCVAG00000016346	-	80	45.975	ENSTSYG00000036016	SPEN	96	43.520	Carlito_syrichta
ENSCVAG00000016346	-	93	47.037	ENSCAPG00000013803	SPEN	100	42.771	Cavia_aperea
ENSCVAG00000016346	-	94	44.801	ENSCPOG00000014036	SPEN	100	41.407	Cavia_porcellus
ENSCVAG00000016346	-	90	43.020	ENSCCAG00000020258	SPEN	86	42.449	Cebus_capucinus
ENSCVAG00000016346	-	84	85.926	ENSCATG00000015079	SPEN	96	85.294	Cercocebus_atys
ENSCVAG00000016346	-	89	47.676	ENSCLAG00000002018	SPEN	82	81.667	Chinchilla_lanigera
ENSCVAG00000016346	-	90	48.492	ENSCSAG00000000841	SPEN	96	45.063	Chlorocebus_sabaeus
ENSCVAG00000016346	-	90	46.129	ENSCANG00000034547	SPEN	86	46.233	Colobus_angolensis_palliatus
ENSCVAG00000016346	-	92	46.833	ENSCGRG00001007725	Spen	97	44.726	Cricetulus_griseus_chok1gshd
ENSCVAG00000016346	-	91	45.244	ENSCGRG00000010581	Spen	97	43.631	Cricetulus_griseus_crigri
ENSCVAG00000016346	-	99	72.460	ENSCSEG00000003915	-	100	72.460	Cynoglossus_semilaevis
ENSCVAG00000016346	-	99	45.247	ENSDARG00000074332	si:ch1073-335m2.2	67	69.725	Danio_rerio
ENSCVAG00000016346	-	99	46.192	ENSDNOG00000041948	SPEN	96	45.690	Dasypus_novemcinctus
ENSCVAG00000016346	-	93	45.899	ENSDORG00000023909	Spen	100	41.669	Dipodomys_ordii
ENSCVAG00000016346	-	53	63.636	ENSETEG00000016692	-	53	63.636	Echinops_telfairi
ENSCVAG00000016346	-	94	86.029	ENSEASG00005015911	SPEN	96	86.029	Equus_asinus_asinus
ENSCVAG00000016346	-	94	86.029	ENSECAG00000008833	SPEN	96	86.029	Equus_caballus
ENSCVAG00000016346	-	61	88.095	ENSEEUG00000010255	SPEN	61	88.095	Erinaceus_europaeus
ENSCVAG00000016346	-	97	80.214	ENSELUG00000007726	si:ch1073-335m2.2	99	82.778	Esox_lucius
ENSCVAG00000016346	-	87	44.405	ENSFALG00000003551	SPEN	100	44.642	Ficedula_albicollis
ENSCVAG00000016346	-	88	47.175	ENSFDAG00000010212	SPEN	83	84.884	Fukomys_damarensis
ENSCVAG00000016346	-	96	84.524	ENSFHEG00000004544	si:ch1073-335m2.2	99	84.524	Fundulus_heteroclitus
ENSCVAG00000016346	-	71	73.737	ENSGMOG00000008156	si:ch1073-335m2.2	99	75.130	Gadus_morhua
ENSCVAG00000016346	-	100	87.122	ENSGAFG00000015819	-	100	87.207	Gambusia_affinis
ENSCVAG00000016346	-	100	41.403	ENSGACG00000001176	si:ch1073-335m2.2	97	79.651	Gasterosteus_aculeatus
ENSCVAG00000016346	-	100	70.534	ENSGACG00000005341	-	100	70.449	Gasterosteus_aculeatus
ENSCVAG00000016346	-	100	47.361	ENSGAGG00000020785	SPEN	100	46.730	Gopherus_agassizii
ENSCVAG00000016346	-	90	48.479	ENSGGOG00000012041	SPEN	87	48.581	Gorilla_gorilla
ENSCVAG00000016346	-	100	75.429	ENSHBUG00000020626	-	100	75.457	Haplochromis_burtoni
ENSCVAG00000016346	-	72	83.432	ENSHBUG00000023253	si:ch1073-335m2.2	100	83.432	Haplochromis_burtoni
ENSCVAG00000016346	-	74	69.198	ENSHGLG00000019259	SPEN	75	81.667	Heterocephalus_glaber_female
ENSCVAG00000016346	-	66	69.198	ENSHGLG00100019294	SPEN	71	81.667	Heterocephalus_glaber_male
ENSCVAG00000016346	-	94	81.102	ENSHCOG00000006004	si:ch1073-335m2.2	99	81.102	Hippocampus_comes
ENSCVAG00000016346	-	100	52.020	ENSIPUG00000021668	spen	100	51.977	Ictalurus_punctatus
ENSCVAG00000016346	-	94	67.265	ENSIPUG00000018212	si:ch1073-335m2.2	99	66.518	Ictalurus_punctatus
ENSCVAG00000016346	-	89	47.327	ENSSTOG00000021428	SPEN	94	81.319	Ictidomys_tridecemlineatus
ENSCVAG00000016346	-	90	48.660	ENSJJAG00000010882	Spen	98	45.725	Jaculus_jaculus
ENSCVAG00000016346	-	97	82.249	ENSKMAG00000021725	si:ch1073-335m2.2	100	82.249	Kryptolebias_marmoratus
ENSCVAG00000016346	-	100	78.087	ENSKMAG00000003882	-	100	78.228	Kryptolebias_marmoratus
ENSCVAG00000016346	-	84	69.131	ENSLBEG00000019129	-	100	69.064	Labrus_bergylta
ENSCVAG00000016346	-	97	82.249	ENSLBEG00000020855	si:ch1073-335m2.2	99	82.249	Labrus_bergylta
ENSCVAG00000016346	-	100	46.965	ENSLACG00000003258	SPEN	100	46.421	Latimeria_chalumnae
ENSCVAG00000016346	-	97	83.448	ENSLOCG00000007896	si:ch1073-335m2.2	97	83.448	Lepisosteus_oculatus
ENSCVAG00000016346	-	90	47.458	ENSLAFG00000004524	SPEN	83	81.319	Loxodonta_africana
ENSCVAG00000016346	-	90	48.415	ENSMFAG00000041974	SPEN	96	45.143	Macaca_fascicularis
ENSCVAG00000016346	-	90	48.415	ENSMMUG00000008026	SPEN	96	45.213	Macaca_mulatta
ENSCVAG00000016346	-	90	48.252	ENSMNEG00000042402	SPEN	96	45.003	Macaca_nemestrina
ENSCVAG00000016346	-	90	47.580	ENSMLEG00000039293	SPEN	96	44.460	Mandrillus_leucophaeus
ENSCVAG00000016346	-	97	83.832	ENSMAMG00000023870	si:ch1073-335m2.2	99	83.832	Mastacembelus_armatus
ENSCVAG00000016346	-	89	73.384	ENSMZEG00005021491	-	99	73.415	Maylandia_zebra
ENSCVAG00000016346	-	75	79.651	ENSMZEG00005011762	si:ch1073-335m2.2	100	83.432	Maylandia_zebra
ENSCVAG00000016346	-	93	47.095	ENSMAUG00000008318	Spen	96	51.422	Mesocricetus_auratus
ENSCVAG00000016346	-	90	47.817	ENSMICG00000030994	SPEN	86	48.354	Microcebus_murinus
ENSCVAG00000016346	-	89	47.989	ENSMOCG00000016083	Spen	97	44.801	Microtus_ochrogaster
ENSCVAG00000016346	-	95	74.869	ENSMMOG00000021742	si:ch1073-335m2.2	98	82.249	Mola_mola
ENSCVAG00000016346	-	100	44.943	ENSMODG00000003411	SPEN	100	44.763	Monodelphis_domestica
ENSCVAG00000016346	-	100	75.253	ENSMALG00000008625	-	100	75.309	Monopterus_albus
ENSCVAG00000016346	-	90	48.074	MGP_CAROLIEiJ_G0026745	Spen	97	44.620	Mus_caroli
ENSCVAG00000016346	-	90	48.361	ENSMUSG00000040761	Spen	97	45.023	Mus_musculus
ENSCVAG00000016346	-	99	44.452	MGP_PahariEiJ_G0029076	Spen	97	44.370	Mus_pahari
ENSCVAG00000016346	-	99	45.084	MGP_SPRETEiJ_G0027724	Spen	97	44.866	Mus_spretus
ENSCVAG00000016346	-	88	47.481	ENSMPUG00000016317	SPEN	96	44.013	Mustela_putorius_furo
ENSCVAG00000016346	-	93	87.097	ENSMLUG00000010144	SPEN	93	87.097	Myotis_lucifugus
ENSCVAG00000016346	-	95	48.568	ENSNGAG00000000641	Spen	97	48.528	Nannospalax_galili
ENSCVAG00000016346	-	85	72.320	ENSNBRG00000022090	-	100	72.519	Neolamprologus_brichardi
ENSCVAG00000016346	-	95	74.372	ENSNBRG00000005733	si:ch1073-335m2.2	100	83.432	Neolamprologus_brichardi
ENSCVAG00000016346	-	89	47.641	ENSNLEG00000007652	SPEN	84	60.915	Nomascus_leucogenys
ENSCVAG00000016346	-	90	82.292	ENSMEUG00000002422	SPEN	90	82.292	Notamacropus_eugenii
ENSCVAG00000016346	-	66	63.531	ENSOPRG00000015800	SPEN	81	63.531	Ochotona_princeps
ENSCVAG00000016346	-	94	46.157	ENSODEG00000016644	SPEN	100	42.384	Octodon_degus
ENSCVAG00000016346	-	100	73.791	ENSONIG00000006573	-	99	85.906	Oreochromis_niloticus
ENSCVAG00000016346	-	69	51.908	ENSOCUG00000010840	SPEN	97	42.547	Oryctolagus_cuniculus
ENSCVAG00000016346	-	87	64.412	ENSORLG00000028894	-	100	64.412	Oryzias_latipes
ENSCVAG00000016346	-	87	64.937	ENSORLG00020007735	-	100	64.937	Oryzias_latipes_hni
ENSCVAG00000016346	-	100	67.023	ENSORLG00015022085	-	100	67.023	Oryzias_latipes_hsok
ENSCVAG00000016346	-	100	66.526	ENSOMEG00000007639	-	100	66.207	Oryzias_melastigma
ENSCVAG00000016346	-	90	58.280	ENSOGAG00000025110	SPEN	93	48.583	Otolemur_garnettii
ENSCVAG00000016346	-	99	45.079	ENSOARG00000008477	SPEN	96	44.619	Ovis_aries
ENSCVAG00000016346	-	89	47.764	ENSPPAG00000035690	SPEN	96	44.699	Pan_paniscus
ENSCVAG00000016346	-	90	48.357	ENSPTRG00000000210	SPEN	87	48.459	Pan_troglodytes
ENSCVAG00000016346	-	90	47.392	ENSPANG00000006293	SPEN	96	44.328	Papio_anubis
ENSCVAG00000016346	-	97	100.000	ENSPKIG00000010492	si:ch1073-335m2.2	100	100.000	Paramormyrops_kingsleyae
ENSCVAG00000016346	-	100	51.685	ENSPKIG00000002617	SPEN	100	51.806	Paramormyrops_kingsleyae
ENSCVAG00000016346	-	99	45.462	ENSPSIG00000008026	SPEN	100	44.800	Pelodiscus_sinensis
ENSCVAG00000016346	-	91	46.017	ENSPEMG00000022997	Spen	97	44.004	Peromyscus_maniculatus_bairdii
ENSCVAG00000016346	-	50	82.840	ENSPFOG00000017986	si:ch1073-335m2.2	99	82.840	Poecilia_formosa
ENSCVAG00000016346	-	93	82.840	ENSPLAG00000016625	si:ch1073-335m2.2	99	82.840	Poecilia_latipinna
ENSCVAG00000016346	-	50	82.840	ENSPMEG00000002674	si:ch1073-335m2.2	99	82.840	Poecilia_mexicana
ENSCVAG00000016346	-	100	87.179	ENSPMEG00000006764	-	100	87.235	Poecilia_mexicana
ENSCVAG00000016346	-	50	82.840	ENSPREG00000005357	si:ch1073-335m2.2	99	82.840	Poecilia_reticulata
ENSCVAG00000016346	-	100	87.009	ENSPREG00000010399	-	100	87.094	Poecilia_reticulata
ENSCVAG00000016346	-	90	47.867	ENSPPYG00000001834	SPEN	96	44.797	Pongo_abelii
ENSCVAG00000016346	-	87	70.259	ENSPCAG00000009543	SPEN	87	68.103	Procavia_capensis
ENSCVAG00000016346	-	90	47.713	ENSPCOG00000021735	SPEN	83	76.503	Propithecus_coquereli
ENSCVAG00000016346	-	75	61.039	ENSPVAG00000013794	SPEN	72	59.632	Pteropus_vampyrus
ENSCVAG00000016346	-	75	79.651	ENSPNYG00000009042	si:ch1073-335m2.2	100	83.432	Pundamilia_nyererei
ENSCVAG00000016346	-	100	75.429	ENSPNYG00000012379	-	100	75.457	Pundamilia_nyererei
ENSCVAG00000016346	-	100	54.882	ENSPNAG00000020795	spen	87	68.051	Pygocentrus_nattereri
ENSCVAG00000016346	-	97	78.889	ENSPNAG00000011452	si:ch1073-335m2.2	99	78.889	Pygocentrus_nattereri
ENSCVAG00000016346	-	89	46.588	ENSRNOG00000033556	Spen	97	43.732	Rattus_norvegicus
ENSCVAG00000016346	-	90	47.557	ENSRBIG00000039654	SPEN	96	44.723	Rhinopithecus_bieti
ENSCVAG00000016346	-	89	47.699	ENSRROG00000035686	SPEN	96	44.746	Rhinopithecus_roxellana
ENSCVAG00000016346	-	88	48.452	ENSSBOG00000028770	SPEN	88	48.643	Saimiri_boliviensis_boliviensis
ENSCVAG00000016346	-	94	48.495	ENSSHAG00000004960	SPEN	99	70.069	Sarcophilus_harrisii
ENSCVAG00000016346	-	100	53.756	ENSSFOG00015010267	si:ch1073-335m2.2	100	53.452	Scleropages_formosus
ENSCVAG00000016346	-	87	52.958	ENSSFOG00015007131	si:ch1073-335m2.2	100	52.927	Scleropages_formosus
ENSCVAG00000016346	-	100	74.691	ENSSMAG00000008996	-	100	74.515	Scophthalmus_maximus
ENSCVAG00000016346	-	94	44.211	ENSSMAG00000000125	si:ch1073-335m2.2	100	82.840	Scophthalmus_maximus
ENSCVAG00000016346	-	97	83.432	ENSSDUG00000008416	si:ch1073-335m2.2	100	83.432	Seriola_dumerili
ENSCVAG00000016346	-	100	77.075	ENSSDUG00000003476	-	87	95.531	Seriola_dumerili
ENSCVAG00000016346	-	97	83.432	ENSSLDG00000023347	si:ch1073-335m2.2	99	83.432	Seriola_lalandi_dorsalis
ENSCVAG00000016346	-	100	76.889	ENSSLDG00000012950	-	87	95.531	Seriola_lalandi_dorsalis
ENSCVAG00000016346	-	87	42.625	ENSSPUG00000001866	-	100	42.591	Sphenodon_punctatus
ENSCVAG00000016346	-	100	78.891	ENSSPAG00000006014	-	100	78.919	Stegastes_partitus
ENSCVAG00000016346	-	97	84.024	ENSSPAG00000012454	si:ch1073-335m2.2	100	84.024	Stegastes_partitus
ENSCVAG00000016346	-	86	46.148	ENSSSCG00000034484	SPEN	95	45.689	Sus_scrofa
ENSCVAG00000016346	-	100	69.845	ENSTRUG00000024350	-	100	69.781	Takifugu_rubripes
ENSCVAG00000016346	-	60	62.016	ENSTRUG00000021008	si:ch1073-335m2.2	100	77.717	Takifugu_rubripes
ENSCVAG00000016346	-	96	85.206	ENSTNIG00000010907	-	100	85.206	Tetraodon_nigroviridis
ENSCVAG00000016346	-	94	71.770	ENSTNIG00000014666	si:ch1073-335m2.2	99	79.006	Tetraodon_nigroviridis
ENSCVAG00000016346	-	70	77.340	ENSTBEG00000003628	SPEN	68	81.319	Tupaia_belangeri
ENSCVAG00000016346	-	75	74.299	ENSTTRG00000015704	SPEN	70	81.319	Tursiops_truncatus
ENSCVAG00000016346	-	99	46.003	ENSUAMG00000009600	SPEN	96	45.686	Ursus_americanus
ENSCVAG00000016346	-	99	44.886	ENSUMAG00000021641	SPEN	96	44.566	Ursus_maritimus
ENSCVAG00000016346	-	91	100.000	ENSVVUG00000028951	SPEN	95	100.000	Vulpes_vulpes
ENSCVAG00000016346	-	97	75.648	ENSXCOG00000004516	si:ch1073-335m2.2	99	81.871	Xiphophorus_couchianus
ENSCVAG00000016346	-	100	86.731	ENSXMAG00000021384	-	100	86.731	Xiphophorus_maculatus