EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000016528 (Gene tree)
Gene ID: 107104196
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 5165 bases
Position: chrKL654147.1:41800-46964
Accession: 107104196
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000029040	zf-CCCH	PF00642.24	1.1e-20	1	2
ENSCVAP00000029040	zf-CCCH	PF00642.24	1.1e-20	2	2
ENSCVAP00000029040	zf-CCHC	PF00098.23	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000021652	-	2333	XM_015404141	ENSCVAP00000029040	265 (aa)	XP_015259627	UPI00074271F7

Gene Model

Click here to download ENSCVAG00000016528's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000016528's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000016528	cpsf4	100	83.333	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSCVAG00000016528	cpsf4	67	81.356	ENSAPOG00000004921	cpsf4	100	81.356	Acanthochromis_polyacanthus
ENSCVAG00000016528	cpsf4	100	83.333	ENSAMEG00000006252	CPSF4	100	83.333	Ailuropoda_melanoleuca
ENSCVAG00000016528	cpsf4	100	83.396	ENSACIG00000009248	cpsf4	100	84.151	Amphilophus_citrinellus
ENSCVAG00000016528	cpsf4	100	90.943	ENSAOCG00000019616	cpsf4	100	90.943	Amphiprion_ocellaris
ENSCVAG00000016528	cpsf4	100	90.943	ENSAPEG00000011679	cpsf4	100	90.943	Amphiprion_percula
ENSCVAG00000016528	cpsf4	100	90.262	ENSATEG00000007010	cpsf4	100	90.262	Anabas_testudineus
ENSCVAG00000016528	cpsf4	100	81.852	ENSACAG00000012941	CPSF4	89	81.852	Anolis_carolinensis
ENSCVAG00000016528	cpsf4	100	83.333	ENSANAG00000021360	CPSF4	100	83.333	Aotus_nancymaae
ENSCVAG00000016528	cpsf4	100	90.189	ENSACLG00000010374	cpsf4	100	90.189	Astatotilapia_calliptera
ENSCVAG00000016528	cpsf4	100	84.815	ENSAMXG00000031647	cpsf4	100	84.815	Astyanax_mexicanus
ENSCVAG00000016528	cpsf4	100	79.623	ENSBTAG00000002090	CPSF4	100	79.623	Bos_taurus
ENSCVAG00000016528	cpsf4	100	83.333	ENSCJAG00000015826	CPSF4	100	83.333	Callithrix_jacchus
ENSCVAG00000016528	cpsf4	100	83.333	ENSCAFG00000015036	CPSF4	99	87.273	Canis_familiaris
ENSCVAG00000016528	cpsf4	100	78.889	ENSCAFG00020014462	CPSF4	100	78.889	Canis_lupus_dingo
ENSCVAG00000016528	cpsf4	100	82.963	ENSCHIG00000014313	CPSF4	100	82.963	Capra_hircus
ENSCVAG00000016528	cpsf4	89	74.684	ENSTSYG00000008195	-	99	74.797	Carlito_syrichta
ENSCVAG00000016528	cpsf4	100	73.308	ENSTSYG00000014604	-	100	73.308	Carlito_syrichta
ENSCVAG00000016528	cpsf4	100	80.755	ENSTSYG00000005712	-	100	80.755	Carlito_syrichta
ENSCVAG00000016528	cpsf4	82	82.805	ENSCAPG00000013881	CPSF4	88	82.063	Cavia_aperea
ENSCVAG00000016528	cpsf4	100	80.377	ENSCPOG00000001783	CPSF4	100	80.377	Cavia_porcellus
ENSCVAG00000016528	cpsf4	100	83.333	ENSCCAG00000028291	CPSF4	100	83.333	Cebus_capucinus
ENSCVAG00000016528	cpsf4	100	83.333	ENSCATG00000038440	CPSF4	100	83.333	Cercocebus_atys
ENSCVAG00000016528	cpsf4	100	83.704	ENSCLAG00000007050	CPSF4	100	83.704	Chinchilla_lanigera
ENSCVAG00000016528	cpsf4	100	83.333	ENSCSAG00000017795	CPSF4	100	83.333	Chlorocebus_sabaeus
ENSCVAG00000016528	cpsf4	62	80.000	ENSCPBG00000010269	-	99	80.000	Chrysemys_picta_bellii
ENSCVAG00000016528	cpsf4	80	82.949	ENSCPBG00000020869	CPSF4	100	82.949	Chrysemys_picta_bellii
ENSCVAG00000016528	cpsf4	96	58.594	ENSCING00000021080	-	96	58.594	Ciona_intestinalis
ENSCVAG00000016528	cpsf4	96	55.160	ENSCSAVG00000011469	-	97	55.160	Ciona_savignyi
ENSCVAG00000016528	cpsf4	100	83.333	ENSCANG00000019384	CPSF4	100	83.333	Colobus_angolensis_palliatus
ENSCVAG00000016528	cpsf4	100	80.377	ENSCGRG00001024184	Cpsf4	100	80.377	Cricetulus_griseus_chok1gshd
ENSCVAG00000016528	cpsf4	100	83.333	ENSCGRG00000013892	Cpsf4	100	83.333	Cricetulus_griseus_crigri
ENSCVAG00000016528	cpsf4	100	88.302	ENSCSEG00000019055	cpsf4	100	88.302	Cynoglossus_semilaevis
ENSCVAG00000016528	cpsf4	100	84.502	ENSDARG00000020217	cpsf4	100	84.502	Danio_rerio
ENSCVAG00000016528	cpsf4	100	83.333	ENSDNOG00000006344	CPSF4	100	83.333	Dasypus_novemcinctus
ENSCVAG00000016528	cpsf4	80	83.028	ENSDORG00000000742	Cpsf4	100	83.028	Dipodomys_ordii
ENSCVAG00000016528	cpsf4	100	55.137	FBgn0015621	Clp	99	55.479	Drosophila_melanogaster
ENSCVAG00000016528	cpsf4	71	92.727	ENSETEG00000002608	CPSF4	70	92.727	Echinops_telfairi
ENSCVAG00000016528	cpsf4	99	67.300	ENSEBUG00000012552	cpsf4	98	67.300	Eptatretus_burgeri
ENSCVAG00000016528	cpsf4	100	80.377	ENSEASG00005002487	CPSF4	100	80.377	Equus_asinus_asinus
ENSCVAG00000016528	cpsf4	100	83.333	ENSECAG00000007525	CPSF4	100	83.333	Equus_caballus
ENSCVAG00000016528	cpsf4	63	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSCVAG00000016528	cpsf4	100	83.456	ENSELUG00000011481	cpsf4	100	83.456	Esox_lucius
ENSCVAG00000016528	cpsf4	100	83.333	ENSFCAG00000015070	CPSF4	100	83.333	Felis_catus
ENSCVAG00000016528	cpsf4	62	57.558	ENSFALG00000012906	-	100	57.558	Ficedula_albicollis
ENSCVAG00000016528	cpsf4	100	80.000	ENSFALG00000013799	CPSF4	100	80.000	Ficedula_albicollis
ENSCVAG00000016528	cpsf4	90	82.377	ENSFDAG00000014092	CPSF4	100	82.377	Fukomys_damarensis
ENSCVAG00000016528	cpsf4	100	95.849	ENSFHEG00000010880	cpsf4	100	95.849	Fundulus_heteroclitus
ENSCVAG00000016528	cpsf4	100	81.111	ENSGMOG00000002330	cpsf4	100	81.111	Gadus_morhua
ENSCVAG00000016528	cpsf4	99	37.705	ENSGALG00000004441	-	98	37.705	Gallus_gallus
ENSCVAG00000016528	cpsf4	100	80.755	ENSGALG00000004714	CPSF4	100	80.755	Gallus_gallus
ENSCVAG00000016528	cpsf4	100	95.472	ENSGAFG00000010580	cpsf4	100	95.472	Gambusia_affinis
ENSCVAG00000016528	cpsf4	100	82.836	ENSGACG00000007792	cpsf4	100	82.836	Gasterosteus_aculeatus
ENSCVAG00000016528	cpsf4	100	83.704	ENSGAGG00000021835	CPSF4	100	83.704	Gopherus_agassizii
ENSCVAG00000016528	cpsf4	69	76.374	ENSGAGG00000020579	-	100	76.374	Gopherus_agassizii
ENSCVAG00000016528	cpsf4	100	83.333	ENSGGOG00000015131	CPSF4	100	83.333	Gorilla_gorilla
ENSCVAG00000016528	cpsf4	100	90.189	ENSHBUG00000013699	cpsf4	100	90.189	Haplochromis_burtoni
ENSCVAG00000016528	cpsf4	100	83.026	ENSHGLG00000017150	CPSF4	100	83.026	Heterocephalus_glaber_female
ENSCVAG00000016528	cpsf4	87	80.508	ENSHGLG00100009215	-	100	80.508	Heterocephalus_glaber_male
ENSCVAG00000016528	cpsf4	74	62.944	ENSHGLG00100017302	-	93	62.944	Heterocephalus_glaber_male
ENSCVAG00000016528	cpsf4	100	88.346	ENSHCOG00000004397	cpsf4	100	88.346	Hippocampus_comes
ENSCVAG00000016528	cpsf4	100	83.395	ENSIPUG00000017147	cpsf4	100	84.871	Ictalurus_punctatus
ENSCVAG00000016528	cpsf4	100	83.333	ENSSTOG00000001688	CPSF4	100	83.333	Ictidomys_tridecemlineatus
ENSCVAG00000016528	cpsf4	100	83.704	ENSJJAG00000019426	Cpsf4	100	83.704	Jaculus_jaculus
ENSCVAG00000016528	cpsf4	100	89.434	ENSKMAG00000015642	cpsf4	100	89.434	Kryptolebias_marmoratus
ENSCVAG00000016528	cpsf4	100	84.133	ENSLACG00000010938	CPSF4	100	84.133	Latimeria_chalumnae
ENSCVAG00000016528	cpsf4	100	59.023	ENSLACG00000018470	-	100	59.023	Latimeria_chalumnae
ENSCVAG00000016528	cpsf4	100	83.643	ENSLOCG00000004814	cpsf4	100	83.643	Lepisosteus_oculatus
ENSCVAG00000016528	cpsf4	100	82.963	ENSLAFG00000000159	CPSF4	100	82.963	Loxodonta_africana
ENSCVAG00000016528	cpsf4	100	83.333	ENSMFAG00000001462	CPSF4	100	83.333	Macaca_fascicularis
ENSCVAG00000016528	cpsf4	100	83.333	ENSMMUG00000019191	CPSF4	100	83.333	Macaca_mulatta
ENSCVAG00000016528	cpsf4	100	83.333	ENSMNEG00000032306	CPSF4	100	83.333	Macaca_nemestrina
ENSCVAG00000016528	cpsf4	100	83.333	ENSMLEG00000034721	CPSF4	100	83.333	Mandrillus_leucophaeus
ENSCVAG00000016528	cpsf4	100	90.226	ENSMAMG00000006244	cpsf4	100	90.226	Mastacembelus_armatus
ENSCVAG00000016528	cpsf4	100	90.189	ENSMZEG00005007515	cpsf4	100	90.189	Maylandia_zebra
ENSCVAG00000016528	cpsf4	87	78.788	ENSMGAG00000004235	CPSF4	100	78.788	Meleagris_gallopavo
ENSCVAG00000016528	cpsf4	100	83.333	ENSMAUG00000021253	Cpsf4	100	83.333	Mesocricetus_auratus
ENSCVAG00000016528	cpsf4	100	83.333	ENSMICG00000017429	CPSF4	100	83.333	Microcebus_murinus
ENSCVAG00000016528	cpsf4	100	83.333	ENSMOCG00000014901	Cpsf4	100	83.333	Microtus_ochrogaster
ENSCVAG00000016528	cpsf4	100	90.226	ENSMMOG00000001813	cpsf4	100	90.226	Mola_mola
ENSCVAG00000016528	cpsf4	100	84.444	ENSMODG00000001367	CPSF4	100	84.444	Monodelphis_domestica
ENSCVAG00000016528	cpsf4	100	89.474	ENSMALG00000012611	cpsf4	100	89.474	Monopterus_albus
ENSCVAG00000016528	cpsf4	100	83.333	MGP_CAROLIEiJ_G0028012	Cpsf4	100	83.333	Mus_caroli
ENSCVAG00000016528	cpsf4	100	83.333	ENSMUSG00000029625	Cpsf4	100	83.333	Mus_musculus
ENSCVAG00000016528	cpsf4	100	83.333	MGP_PahariEiJ_G0024581	Cpsf4	100	83.333	Mus_pahari
ENSCVAG00000016528	cpsf4	100	83.333	MGP_SPRETEiJ_G0029013	Cpsf4	100	83.333	Mus_spretus
ENSCVAG00000016528	cpsf4	100	83.333	ENSMPUG00000016508	CPSF4	100	83.333	Mustela_putorius_furo
ENSCVAG00000016528	cpsf4	87	78.788	ENSMLUG00000010980	CPSF4	100	78.788	Myotis_lucifugus
ENSCVAG00000016528	cpsf4	100	83.333	ENSNGAG00000001567	Cpsf4	100	83.333	Nannospalax_galili
ENSCVAG00000016528	cpsf4	91	89.627	ENSNBRG00000003943	cpsf4	98	89.627	Neolamprologus_brichardi
ENSCVAG00000016528	cpsf4	100	81.579	ENSNLEG00000011074	CPSF4	100	81.579	Nomascus_leucogenys
ENSCVAG00000016528	cpsf4	100	84.444	ENSMEUG00000006955	CPSF4	100	84.444	Notamacropus_eugenii
ENSCVAG00000016528	cpsf4	100	83.333	ENSOPRG00000013663	CPSF4	100	83.333	Ochotona_princeps
ENSCVAG00000016528	cpsf4	100	64.576	ENSODEG00000009779	-	100	64.576	Octodon_degus
ENSCVAG00000016528	cpsf4	98	68.582	ENSODEG00000018283	-	91	68.582	Octodon_degus
ENSCVAG00000016528	cpsf4	100	83.333	ENSODEG00000011181	-	100	83.333	Octodon_degus
ENSCVAG00000016528	cpsf4	100	90.189	ENSONIG00000008495	cpsf4	100	90.189	Oreochromis_niloticus
ENSCVAG00000016528	cpsf4	87	82.553	ENSOANG00000007729	CPSF4	100	82.553	Ornithorhynchus_anatinus
ENSCVAG00000016528	cpsf4	100	53.237	ENSOANG00000009568	-	100	53.237	Ornithorhynchus_anatinus
ENSCVAG00000016528	cpsf4	100	83.333	ENSOCUG00000002437	CPSF4	70	83.333	Oryctolagus_cuniculus
ENSCVAG00000016528	cpsf4	100	91.698	ENSORLG00000022798	cpsf4	100	91.698	Oryzias_latipes
ENSCVAG00000016528	cpsf4	100	91.698	ENSORLG00020008548	cpsf4	100	91.698	Oryzias_latipes_hni
ENSCVAG00000016528	cpsf4	100	91.321	ENSORLG00015019575	cpsf4	100	91.321	Oryzias_latipes_hsok
ENSCVAG00000016528	cpsf4	100	90.943	ENSOMEG00000005176	cpsf4	100	90.943	Oryzias_melastigma
ENSCVAG00000016528	cpsf4	100	83.333	ENSOGAG00000010884	CPSF4	100	83.333	Otolemur_garnettii
ENSCVAG00000016528	cpsf4	100	72.527	ENSOARG00000018668	CPSF4	100	72.527	Ovis_aries
ENSCVAG00000016528	cpsf4	100	83.333	ENSPPAG00000043355	CPSF4	100	83.333	Pan_paniscus
ENSCVAG00000016528	cpsf4	100	83.333	ENSPPRG00000003134	CPSF4	100	83.333	Panthera_pardus
ENSCVAG00000016528	cpsf4	90	83.128	ENSPTIG00000005604	CPSF4	90	83.128	Panthera_tigris_altaica
ENSCVAG00000016528	cpsf4	100	83.333	ENSPTRG00000019453	CPSF4	100	83.333	Pan_troglodytes
ENSCVAG00000016528	cpsf4	100	83.333	ENSPANG00000023123	CPSF4	100	83.333	Papio_anubis
ENSCVAG00000016528	cpsf4	100	82.117	ENSPKIG00000014278	cpsf4	100	82.117	Paramormyrops_kingsleyae
ENSCVAG00000016528	cpsf4	81	58.411	ENSPSIG00000018198	-	100	58.411	Pelodiscus_sinensis
ENSCVAG00000016528	cpsf4	80	82.488	ENSPSIG00000011229	CPSF4	100	82.488	Pelodiscus_sinensis
ENSCVAG00000016528	cpsf4	100	78.113	ENSPMGG00000017735	cpsf4	100	78.113	Periophthalmus_magnuspinnatus
ENSCVAG00000016528	cpsf4	100	83.333	ENSPEMG00000004508	Cpsf4	100	83.333	Peromyscus_maniculatus_bairdii
ENSCVAG00000016528	cpsf4	100	84.444	ENSPCIG00000024776	CPSF4	100	84.444	Phascolarctos_cinereus
ENSCVAG00000016528	cpsf4	100	95.472	ENSPFOG00000014912	cpsf4	100	95.472	Poecilia_formosa
ENSCVAG00000016528	cpsf4	100	87.170	ENSPLAG00000009599	cpsf4	100	87.170	Poecilia_latipinna
ENSCVAG00000016528	cpsf4	100	95.472	ENSPMEG00000009790	cpsf4	100	95.472	Poecilia_mexicana
ENSCVAG00000016528	cpsf4	100	94.717	ENSPREG00000018166	cpsf4	100	94.717	Poecilia_reticulata
ENSCVAG00000016528	cpsf4	87	82.128	ENSPPYG00000017378	CPSF4	100	82.128	Pongo_abelii
ENSCVAG00000016528	cpsf4	100	82.963	ENSPCAG00000001892	CPSF4	100	82.963	Procavia_capensis
ENSCVAG00000016528	cpsf4	100	83.333	ENSPCOG00000012771	CPSF4	100	83.333	Propithecus_coquereli
ENSCVAG00000016528	cpsf4	100	78.519	ENSPVAG00000007531	CPSF4	100	78.519	Pteropus_vampyrus
ENSCVAG00000016528	cpsf4	100	90.189	ENSPNYG00000018559	cpsf4	100	90.189	Pundamilia_nyererei
ENSCVAG00000016528	cpsf4	100	86.296	ENSPNAG00000003736	cpsf4	100	86.296	Pygocentrus_nattereri
ENSCVAG00000016528	cpsf4	100	80.000	ENSRNOG00000000985	Cpsf4	100	80.000	Rattus_norvegicus
ENSCVAG00000016528	cpsf4	87	82.553	ENSRBIG00000033886	CPSF4	100	82.553	Rhinopithecus_bieti
ENSCVAG00000016528	cpsf4	100	80.377	ENSRROG00000040431	CPSF4	100	80.377	Rhinopithecus_roxellana
ENSCVAG00000016528	cpsf4	100	83.333	ENSSBOG00000020493	CPSF4	100	83.333	Saimiri_boliviensis_boliviensis
ENSCVAG00000016528	cpsf4	100	84.444	ENSSHAG00000011533	CPSF4	100	84.444	Sarcophilus_harrisii
ENSCVAG00000016528	cpsf4	100	82.246	ENSSFOG00015007883	cpsf4	100	82.246	Scleropages_formosus
ENSCVAG00000016528	cpsf4	100	83.459	ENSSMAG00000006374	cpsf4	100	83.459	Scophthalmus_maximus
ENSCVAG00000016528	cpsf4	100	90.602	ENSSDUG00000018887	cpsf4	100	90.602	Seriola_dumerili
ENSCVAG00000016528	cpsf4	100	90.226	ENSSLDG00000019078	cpsf4	100	90.226	Seriola_lalandi_dorsalis
ENSCVAG00000016528	cpsf4	87	82.553	ENSSARG00000012416	CPSF4	100	82.553	Sorex_araneus
ENSCVAG00000016528	cpsf4	97	58.203	ENSSPUG00000014803	-	98	58.203	Sphenodon_punctatus
ENSCVAG00000016528	cpsf4	100	82.963	ENSSPUG00000003549	CPSF4	100	82.963	Sphenodon_punctatus
ENSCVAG00000016528	cpsf4	100	85.283	ENSSPAG00000006174	cpsf4	100	85.283	Stegastes_partitus
ENSCVAG00000016528	cpsf4	100	80.377	ENSSSCG00000026896	CPSF4	100	80.377	Sus_scrofa
ENSCVAG00000016528	cpsf4	100	79.026	ENSTGUG00000007552	CPSF4	100	79.026	Taeniopygia_guttata
ENSCVAG00000016528	cpsf4	100	86.792	ENSTRUG00000024220	cpsf4	100	86.792	Takifugu_rubripes
ENSCVAG00000016528	cpsf4	100	87.925	ENSTNIG00000006265	cpsf4	100	87.925	Tetraodon_nigroviridis
ENSCVAG00000016528	cpsf4	87	73.617	ENSTBEG00000011406	CPSF4	100	73.617	Tupaia_belangeri
ENSCVAG00000016528	cpsf4	100	72.119	ENSTTRG00000003007	CPSF4	100	72.119	Tursiops_truncatus
ENSCVAG00000016528	cpsf4	92	79.012	ENSUAMG00000008051	CPSF4	85	79.012	Ursus_americanus
ENSCVAG00000016528	cpsf4	100	80.000	ENSUMAG00000009474	CPSF4	100	80.000	Ursus_maritimus
ENSCVAG00000016528	cpsf4	100	80.377	ENSVVUG00000008824	CPSF4	100	80.377	Vulpes_vulpes
ENSCVAG00000016528	cpsf4	99	60.440	ENSXETG00000004641	cpsf4l	99	60.440	Xenopus_tropicalis
ENSCVAG00000016528	cpsf4	100	79.211	ENSXETG00000009892	cpsf4	100	79.570	Xenopus_tropicalis
ENSCVAG00000016528	cpsf4	100	95.094	ENSXCOG00000016040	cpsf4	100	95.094	Xiphophorus_couchianus
ENSCVAG00000016528	cpsf4	100	95.472	ENSXMAG00000024670	cpsf4	100	95.472	Xiphophorus_maculatus