EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000016547 (Gene tree)
Gene ID: -
Gene Symbol: ppargc1a
Alias: PGC1|gb:dq017637|ppargc1al
Full Name: PPARG coactivator 1 alpha
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 55207 bases
Position: chrKL652651.1:1091558-1146764
Accession: 107086393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000029047	RRM_1	PF00076.22	2e-06	1	1
ENSCVAP00000013949	RRM_1	PF00076.22	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000021634	-	2664	XM_015377295	ENSCVAP00000013949	887 (aa)	XP_015232781	-
ENSCVAT00000021622	-	6184	-	ENSCVAP00000029047	892 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000016547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000016547's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000016547	ppargc1a	64	78.659	ENSG00000109819	PPARGC1A	79	83.333	Homo_sapiens
ENSCVAG00000016547	ppargc1a	100	73.947	ENSAPOG00000018632	ppargc1a	99	77.551	Acanthochromis_polyacanthus
ENSCVAG00000016547	ppargc1a	64	78.659	ENSAMEG00000010421	PPARGC1A	70	45.224	Ailuropoda_melanoleuca
ENSCVAG00000016547	ppargc1a	100	61.111	ENSACIG00000009732	ppargc1a	66	63.727	Amphilophus_citrinellus
ENSCVAG00000016547	ppargc1a	100	73.783	ENSAOCG00000006754	ppargc1a	99	77.551	Amphiprion_ocellaris
ENSCVAG00000016547	ppargc1a	100	67.429	ENSAPEG00000022574	ppargc1a	69	69.368	Amphiprion_percula
ENSCVAG00000016547	ppargc1a	100	71.908	ENSATEG00000016702	ppargc1a	99	77.328	Anabas_testudineus
ENSCVAG00000016547	ppargc1a	64	78.788	ENSAPLG00000005303	PPARGC1A	70	45.564	Anas_platyrhynchos
ENSCVAG00000016547	ppargc1a	100	48.335	ENSACAG00000000741	PPARGC1A	96	59.583	Anolis_carolinensis
ENSCVAG00000016547	ppargc1a	63	78.659	ENSANAG00000035930	PPARGC1A	91	46.809	Aotus_nancymaae
ENSCVAG00000016547	ppargc1a	95	77.656	ENSACLG00000001002	ppargc1a	87	75.424	Astatotilapia_calliptera
ENSCVAG00000016547	ppargc1a	89	71.101	ENSAMXG00000002461	ppargc1a	96	71.101	Astyanax_mexicanus
ENSCVAG00000016547	ppargc1a	73	47.951	ENSCJAG00000013024	PPARGC1A	70	46.477	Callithrix_jacchus
ENSCVAG00000016547	ppargc1a	64	78.659	ENSCAFG00000016519	PPARGC1A	70	45.865	Canis_familiaris
ENSCVAG00000016547	ppargc1a	64	78.659	ENSCAFG00020027242	PPARGC1A	72	45.865	Canis_lupus_dingo
ENSCVAG00000016547	ppargc1a	64	78.182	ENSCHIG00000015991	PPARGC1A	71	45.659	Capra_hircus
ENSCVAG00000016547	ppargc1a	65	78.659	ENSTSYG00000010439	PPARGC1A	83	46.627	Carlito_syrichta
ENSCVAG00000016547	ppargc1a	58	78.049	ENSCAPG00000005150	PPARGC1A	65	44.186	Cavia_aperea
ENSCVAG00000016547	ppargc1a	62	78.049	ENSCPOG00000001518	PPARGC1A	70	46.027	Cavia_porcellus
ENSCVAG00000016547	ppargc1a	100	47.803	ENSCCAG00000024681	PPARGC1A	88	44.992	Cebus_capucinus
ENSCVAG00000016547	ppargc1a	100	47.021	ENSCATG00000032575	PPARGC1A	88	46.850	Cercocebus_atys
ENSCVAG00000016547	ppargc1a	73	47.734	ENSCLAG00000002058	PPARGC1A	70	47.193	Chinchilla_lanigera
ENSCVAG00000016547	ppargc1a	64	78.659	ENSCSAG00000016575	PPARGC1A	70	46.627	Chlorocebus_sabaeus
ENSCVAG00000016547	ppargc1a	100	47.154	ENSCANG00000033426	PPARGC1A	88	45.396	Colobus_angolensis_palliatus
ENSCVAG00000016547	ppargc1a	63	77.439	ENSCGRG00001015534	Ppargc1a	67	46.840	Cricetulus_griseus_chok1gshd
ENSCVAG00000016547	ppargc1a	63	77.439	ENSCGRG00000000200	Ppargc1a	67	46.840	Cricetulus_griseus_crigri
ENSCVAG00000016547	ppargc1a	92	76.800	ENSCSEG00000006884	ppargc1a	87	77.823	Cynoglossus_semilaevis
ENSCVAG00000016547	ppargc1a	70	49.313	ENSDARG00000067829	ppargc1a	66	53.736	Danio_rerio
ENSCVAG00000016547	ppargc1a	100	48.663	ENSDNOG00000041106	PPARGC1A	69	46.908	Dasypus_novemcinctus
ENSCVAG00000016547	ppargc1a	64	76.829	ENSDORG00000016276	Ppargc1a	70	45.075	Dipodomys_ordii
ENSCVAG00000016547	ppargc1a	64	78.659	ENSEASG00005007984	PPARGC1A	70	45.142	Equus_asinus_asinus
ENSCVAG00000016547	ppargc1a	64	78.659	ENSECAG00000009164	PPARGC1A	74	45.142	Equus_caballus
ENSCVAG00000016547	ppargc1a	98	46.885	ENSEEUG00000009219	PPARGC1A	71	44.511	Erinaceus_europaeus
ENSCVAG00000016547	ppargc1a	91	75.107	ENSELUG00000017027	ppargc1a	100	58.476	Esox_lucius
ENSCVAG00000016547	ppargc1a	100	48.669	ENSFCAG00000000043	PPARGC1A	70	45.551	Felis_catus
ENSCVAG00000016547	ppargc1a	99	45.674	ENSFALG00000009211	PPARGC1A	93	61.463	Ficedula_albicollis
ENSCVAG00000016547	ppargc1a	93	76.220	ENSFDAG00000005659	PPARGC1A	96	59.091	Fukomys_damarensis
ENSCVAG00000016547	ppargc1a	100	84.417	ENSFHEG00000021990	ppargc1a	70	84.417	Fundulus_heteroclitus
ENSCVAG00000016547	ppargc1a	64	79.394	ENSGALG00000042851	PPARGC1A	71	45.156	Gallus_gallus
ENSCVAG00000016547	ppargc1a	100	84.228	ENSGAFG00000015514	ppargc1a	99	79.592	Gambusia_affinis
ENSCVAG00000016547	ppargc1a	99	46.064	ENSGAGG00000007043	PPARGC1A	94	60.377	Gopherus_agassizii
ENSCVAG00000016547	ppargc1a	93	78.659	ENSGGOG00000009810	PPARGC1A	96	59.091	Gorilla_gorilla
ENSCVAG00000016547	ppargc1a	97	78.472	ENSHBUG00000005269	ppargc1a	99	68.894	Haplochromis_burtoni
ENSCVAG00000016547	ppargc1a	64	76.220	ENSHGLG00000007022	PPARGC1A	71	45.015	Heterocephalus_glaber_female
ENSCVAG00000016547	ppargc1a	64	76.220	ENSHGLG00100000133	PPARGC1A	70	45.015	Heterocephalus_glaber_male
ENSCVAG00000016547	ppargc1a	100	64.286	ENSHCOG00000014886	ppargc1a	100	64.084	Hippocampus_comes
ENSCVAG00000016547	ppargc1a	91	72.650	ENSIPUG00000020313	ppargc1a	69	72.650	Ictalurus_punctatus
ENSCVAG00000016547	ppargc1a	93	77.439	ENSSTOG00000012522	PPARGC1A	96	58.750	Ictidomys_tridecemlineatus
ENSCVAG00000016547	ppargc1a	100	73.508	ENSKMAG00000005390	ppargc1a	100	73.613	Kryptolebias_marmoratus
ENSCVAG00000016547	ppargc1a	99	70.032	ENSLBEG00000019562	ppargc1a	97	71.233	Labrus_bergylta
ENSCVAG00000016547	ppargc1a	92	77.436	ENSLACG00000014054	PPARGC1A	78	47.514	Latimeria_chalumnae
ENSCVAG00000016547	ppargc1a	55	41.353	ENSLOCG00000012195	ppargc1b	53	41.353	Lepisosteus_oculatus
ENSCVAG00000016547	ppargc1a	100	48.112	ENSLAFG00000012981	PPARGC1A	76	46.880	Loxodonta_africana
ENSCVAG00000016547	ppargc1a	100	47.021	ENSMFAG00000000534	PPARGC1A	88	46.850	Macaca_fascicularis
ENSCVAG00000016547	ppargc1a	64	78.659	ENSMMUG00000001844	PPARGC1A	70	46.477	Macaca_mulatta
ENSCVAG00000016547	ppargc1a	100	46.915	ENSMNEG00000028682	PPARGC1A	88	46.677	Macaca_nemestrina
ENSCVAG00000016547	ppargc1a	100	47.021	ENSMLEG00000034233	PPARGC1A	71	78.125	Mandrillus_leucophaeus
ENSCVAG00000016547	ppargc1a	100	71.399	ENSMAMG00000005531	ppargc1a	100	72.594	Mastacembelus_armatus
ENSCVAG00000016547	ppargc1a	97	78.125	ENSMZEG00005001739	ppargc1a	69	77.016	Maylandia_zebra
ENSCVAG00000016547	ppargc1a	64	80.000	ENSMGAG00000012485	PPARGC1A	70	45.306	Meleagris_gallopavo
ENSCVAG00000016547	ppargc1a	63	78.049	ENSMAUG00000011811	Ppargc1a	67	47.326	Mesocricetus_auratus
ENSCVAG00000016547	ppargc1a	65	78.659	ENSMICG00000015390	PPARGC1A	89	46.688	Microcebus_murinus
ENSCVAG00000016547	ppargc1a	64	78.049	ENSMOCG00000008765	Ppargc1a	67	46.613	Microtus_ochrogaster
ENSCVAG00000016547	ppargc1a	100	70.185	ENSMMOG00000011847	ppargc1a	100	68.689	Mola_mola
ENSCVAG00000016547	ppargc1a	93	79.268	ENSMODG00000000549	PPARGC1A	94	63.303	Monodelphis_domestica
ENSCVAG00000016547	ppargc1a	95	76.000	ENSMALG00000004625	ppargc1a	90	77.016	Monopterus_albus
ENSCVAG00000016547	ppargc1a	64	76.220	MGP_CAROLIEiJ_G0027213	Ppargc1a	67	46.353	Mus_caroli
ENSCVAG00000016547	ppargc1a	64	76.220	ENSMUSG00000029167	Ppargc1a	67	46.515	Mus_musculus
ENSCVAG00000016547	ppargc1a	63	76.220	MGP_PahariEiJ_G0016995	Ppargc1a	67	46.353	Mus_pahari
ENSCVAG00000016547	ppargc1a	64	75.610	MGP_SPRETEiJ_G0028208	Ppargc1a	67	46.840	Mus_spretus
ENSCVAG00000016547	ppargc1a	93	78.659	ENSMPUG00000016736	PPARGC1A	96	59.583	Mustela_putorius_furo
ENSCVAG00000016547	ppargc1a	73	46.212	ENSMLUG00000016307	PPARGC1A	67	46.785	Myotis_lucifugus
ENSCVAG00000016547	ppargc1a	93	78.049	ENSNGAG00000015090	Ppargc1a	94	60.550	Nannospalax_galili
ENSCVAG00000016547	ppargc1a	100	64.706	ENSNBRG00000023403	ppargc1a	68	75.843	Neolamprologus_brichardi
ENSCVAG00000016547	ppargc1a	100	47.184	ENSNLEG00000016760	PPARGC1A	92	46.960	Nomascus_leucogenys
ENSCVAG00000016547	ppargc1a	93	77.439	ENSOPRG00000012899	PPARGC1A	97	58.678	Ochotona_princeps
ENSCVAG00000016547	ppargc1a	100	64.609	ENSONIG00000007635	ppargc1a	100	64.686	Oreochromis_niloticus
ENSCVAG00000016547	ppargc1a	100	47.849	ENSOANG00000006680	PPARGC1A	70	45.007	Ornithorhynchus_anatinus
ENSCVAG00000016547	ppargc1a	64	78.049	ENSOCUG00000014668	PPARGC1A	70	46.015	Oryctolagus_cuniculus
ENSCVAG00000016547	ppargc1a	100	71.476	ENSORLG00000004788	ppargc1a	68	83.626	Oryzias_latipes
ENSCVAG00000016547	ppargc1a	97	77.027	ENSORLG00020014690	ppargc1a	100	69.499	Oryzias_latipes_hni
ENSCVAG00000016547	ppargc1a	97	76.689	ENSORLG00015012206	ppargc1a	100	69.750	Oryzias_latipes_hsok
ENSCVAG00000016547	ppargc1a	100	70.501	ENSOMEG00000000670	ppargc1a	100	71.580	Oryzias_melastigma
ENSCVAG00000016547	ppargc1a	100	47.919	ENSOGAG00000014559	PPARGC1A	70	46.477	Otolemur_garnettii
ENSCVAG00000016547	ppargc1a	64	78.182	ENSOARG00000005581	PPARGC1A	68	45.249	Ovis_aries
ENSCVAG00000016547	ppargc1a	100	46.971	ENSPPAG00000034694	PPARGC1A	74	78.125	Pan_paniscus
ENSCVAG00000016547	ppargc1a	100	48.669	ENSPPRG00000001711	PPARGC1A	70	46.003	Panthera_pardus
ENSCVAG00000016547	ppargc1a	100	48.669	ENSPTIG00000007378	PPARGC1A	70	46.003	Panthera_tigris_altaica
ENSCVAG00000016547	ppargc1a	100	47.078	ENSPTRG00000015954	PPARGC1A	72	78.125	Pan_troglodytes
ENSCVAG00000016547	ppargc1a	100	46.752	ENSPANG00000005420	PPARGC1A	88	46.278	Papio_anubis
ENSCVAG00000016547	ppargc1a	90	73.626	ENSPKIG00000002531	ppargc1a	70	61.847	Paramormyrops_kingsleyae
ENSCVAG00000016547	ppargc1a	100	46.162	ENSPSIG00000011790	PPARGC1A	94	62.385	Pelodiscus_sinensis
ENSCVAG00000016547	ppargc1a	100	61.797	ENSPMGG00000019204	ppargc1a	100	64.039	Periophthalmus_magnuspinnatus
ENSCVAG00000016547	ppargc1a	100	48.228	ENSPEMG00000010892	Ppargc1a	67	46.538	Peromyscus_maniculatus_bairdii
ENSCVAG00000016547	ppargc1a	100	47.318	ENSPCIG00000015835	PPARGC1A	70	45.171	Phascolarctos_cinereus
ENSCVAG00000016547	ppargc1a	100	80.704	ENSPFOG00000001263	ppargc1a	100	80.277	Poecilia_formosa
ENSCVAG00000016547	ppargc1a	100	66.993	ENSPLAG00000002827	ppargc1a	99	81.557	Poecilia_latipinna
ENSCVAG00000016547	ppargc1a	100	84.658	ENSPMEG00000000720	ppargc1a	100	83.027	Poecilia_mexicana
ENSCVAG00000016547	ppargc1a	100	84.546	ENSPREG00000019171	ppargc1a	80	80.286	Poecilia_reticulata
ENSCVAG00000016547	ppargc1a	64	78.659	ENSPPYG00000014640	PPARGC1A	70	46.627	Pongo_abelii
ENSCVAG00000016547	ppargc1a	100	47.040	ENSPCAG00000016308	PPARGC1A	70	44.741	Procavia_capensis
ENSCVAG00000016547	ppargc1a	100	47.696	ENSPCOG00000022858	PPARGC1A	90	47.011	Propithecus_coquereli
ENSCVAG00000016547	ppargc1a	64	77.439	ENSPVAG00000004965	PPARGC1A	70	45.113	Pteropus_vampyrus
ENSCVAG00000016547	ppargc1a	97	78.472	ENSPNYG00000006846	ppargc1a	69	77.419	Pundamilia_nyererei
ENSCVAG00000016547	ppargc1a	100	58.440	ENSPNAG00000010393	ppargc1a	98	72.650	Pygocentrus_nattereri
ENSCVAG00000016547	ppargc1a	93	76.829	ENSRNOG00000004473	Ppargc1a	96	58.750	Rattus_norvegicus
ENSCVAG00000016547	ppargc1a	100	47.910	ENSRBIG00000032333	PPARGC1A	96	59.091	Rhinopithecus_bieti
ENSCVAG00000016547	ppargc1a	100	46.902	ENSRROG00000010419	PPARGC1A	87	47.173	Rhinopithecus_roxellana
ENSCVAG00000016547	ppargc1a	100	47.573	ENSSBOG00000006423	PPARGC1A	87	47.173	Saimiri_boliviensis_boliviensis
ENSCVAG00000016547	ppargc1a	100	47.071	ENSSHAG00000010033	PPARGC1A	91	63.303	Sarcophilus_harrisii
ENSCVAG00000016547	ppargc1a	100	48.657	ENSSFOG00015018522	ppargc1a	94	61.702	Scleropages_formosus
ENSCVAG00000016547	ppargc1a	76	47.801	ENSSFOG00015001633	ppargc1a	85	60.800	Scleropages_formosus
ENSCVAG00000016547	ppargc1a	100	70.321	ENSSMAG00000011571	ppargc1a	100	65.155	Scophthalmus_maximus
ENSCVAG00000016547	ppargc1a	71	62.916	ENSSDUG00000007408	ppargc1a	67	61.466	Seriola_dumerili
ENSCVAG00000016547	ppargc1a	100	76.004	ENSSLDG00000006987	ppargc1a	100	76.221	Seriola_lalandi_dorsalis
ENSCVAG00000016547	ppargc1a	88	76.800	ENSSARG00000000575	PPARGC1A	97	57.025	Sorex_araneus
ENSCVAG00000016547	ppargc1a	100	47.368	ENSSPUG00000013556	PPARGC1A	59	78.977	Sphenodon_punctatus
ENSCVAG00000016547	ppargc1a	100	74.806	ENSSPAG00000023514	ppargc1a	79	77.551	Stegastes_partitus
ENSCVAG00000016547	ppargc1a	93	78.659	ENSSSCG00000029275	PPARGC1A	96	60.000	Sus_scrofa
ENSCVAG00000016547	ppargc1a	100	47.122	ENSTGUG00000009487	PPARGC1A	59	78.409	Taeniopygia_guttata
ENSCVAG00000016547	ppargc1a	92	65.721	ENSTRUG00000007210	ppargc1a	92	68.160	Takifugu_rubripes
ENSCVAG00000016547	ppargc1a	93	78.788	ENSTTRG00000005327	PPARGC1A	96	59.583	Tursiops_truncatus
ENSCVAG00000016547	ppargc1a	64	78.659	ENSUAMG00000020843	PPARGC1A	83	44.874	Ursus_americanus
ENSCVAG00000016547	ppargc1a	91	78.659	ENSUMAG00000003557	PPARGC1A	96	58.482	Ursus_maritimus
ENSCVAG00000016547	ppargc1a	65	78.182	ENSVPAG00000003478	PPARGC1A	70	45.373	Vicugna_pacos
ENSCVAG00000016547	ppargc1a	64	78.659	ENSVVUG00000013365	PPARGC1A	70	45.263	Vulpes_vulpes
ENSCVAG00000016547	ppargc1a	100	45.851	ENSXETG00000020468	ppargc1a	94	62.385	Xenopus_tropicalis
ENSCVAG00000016547	ppargc1a	100	80.610	ENSXCOG00000004835	ppargc1a	100	80.823	Xiphophorus_couchianus
ENSCVAG00000016547	ppargc1a	100	84.865	ENSXMAG00000007748	ppargc1a	70	84.978	Xiphophorus_maculatus