EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000016746 (Gene tree)
Gene ID: 107094245
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 9977 bases
Position: chrKL652972.1:295599-305575
Accession: 107094245
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000029163	zf-C2H2	PF00096.26	2.8e-17	1	3
ENSCVAP00000029163	zf-C2H2	PF00096.26	2.8e-17	2	3
ENSCVAP00000029163	zf-C2H2	PF00096.26	2.8e-17	3	3
ENSCVAP00000029180	zf-C2H2	PF00096.26	6.1e-17	1	3
ENSCVAP00000029180	zf-C2H2	PF00096.26	6.1e-17	2	3
ENSCVAP00000029180	zf-C2H2	PF00096.26	6.1e-17	3	3
ENSCVAP00000029163	zf-met	PF12874.7	0.0002	1	1
ENSCVAP00000029180	zf-met	PF12874.7	0.00042	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000021899	-	3766	XM_015389760	ENSCVAP00000029180	709 (aa)	XP_015245246	UPI0007424E85
ENSCVAT00000021860	-	1857	-	ENSCVAP00000029163	618 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000016746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000016746's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000016746	prdm1b	50	38.514	ENSCVAG00000022991	-	95	41.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000016746	prdm1b	65	75.758	ENSAPOG00000022084	prdm1b	84	76.263	Acanthochromis_polyacanthus
ENSCVAG00000016746	prdm1b	97	38.794	ENSAPOG00000014135	-	59	38.593	Acanthochromis_polyacanthus
ENSCVAG00000016746	prdm1b	92	34.464	ENSACIG00000009747	-	57	57.055	Amphilophus_citrinellus
ENSCVAG00000016746	prdm1b	96	74.585	ENSACIG00000014426	prdm1b	97	74.461	Amphilophus_citrinellus
ENSCVAG00000016746	prdm1b	94	73.935	ENSAOCG00000002230	prdm1b	99	74.068	Amphiprion_ocellaris
ENSCVAG00000016746	prdm1b	100	76.090	ENSAPEG00000019826	prdm1b	100	75.809	Amphiprion_percula
ENSCVAG00000016746	prdm1b	99	76.414	ENSATEG00000006924	prdm1b	99	76.613	Anabas_testudineus
ENSCVAG00000016746	prdm1b	64	55.689	ENSATEG00000021017	prdm1a	60	54.749	Anabas_testudineus
ENSCVAG00000016746	prdm1b	92	78.571	ENSACLG00000005487	prdm1b	90	78.163	Astatotilapia_calliptera
ENSCVAG00000016746	prdm1b	74	53.191	ENSCSEG00000009707	prdm1a	80	52.542	Cynoglossus_semilaevis
ENSCVAG00000016746	prdm1b	99	83.170	ENSFHEG00000019848	prdm1b	99	82.899	Fundulus_heteroclitus
ENSCVAG00000016746	prdm1b	72	63.889	ENSGAFG00000013012	-	55	55.215	Gambusia_affinis
ENSCVAG00000016746	prdm1b	96	81.494	ENSGAFG00000016191	prdm1b	97	81.331	Gambusia_affinis
ENSCVAG00000016746	prdm1b	93	69.058	ENSGACG00000002716	prdm1b	99	69.058	Gasterosteus_aculeatus
ENSCVAG00000016746	prdm1b	92	78.571	ENSHBUG00000001475	prdm1b	95	78.709	Haplochromis_burtoni
ENSCVAG00000016746	prdm1b	99	70.192	ENSHCOG00000003617	prdm1b	99	70.673	Hippocampus_comes
ENSCVAG00000016746	prdm1b	87	74.405	ENSIPUG00000013740	prdm1b	78	74.850	Ictalurus_punctatus
ENSCVAG00000016746	prdm1b	91	74.735	ENSKMAG00000011218	prdm1b	91	74.291	Kryptolebias_marmoratus
ENSCVAG00000016746	prdm1b	61	54.857	ENSKMAG00000017597	prdm1a	68	50.980	Kryptolebias_marmoratus
ENSCVAG00000016746	prdm1b	90	39.415	ENSKMAG00000016247	-	88	30.907	Kryptolebias_marmoratus
ENSCVAG00000016746	prdm1b	100	77.901	ENSLBEG00000020955	prdm1b	100	77.210	Labrus_bergylta
ENSCVAG00000016746	prdm1b	93	65.196	ENSLOCG00000004978	prdm1b	78	74.269	Lepisosteus_oculatus
ENSCVAG00000016746	prdm1b	99	76.948	ENSMZEG00005026361	prdm1b	95	76.575	Maylandia_zebra
ENSCVAG00000016746	prdm1b	94	74.703	ENSMMOG00000013458	prdm1b	97	74.237	Mola_mola
ENSCVAG00000016746	prdm1b	60	56.442	ENSMALG00000000462	-	55	56.442	Monopterus_albus
ENSCVAG00000016746	prdm1b	96	73.632	ENSMALG00000011410	prdm1b	99	72.968	Monopterus_albus
ENSCVAG00000016746	prdm1b	87	94.444	ENSONIG00000013583	prdm1b	88	86.127	Oreochromis_niloticus
ENSCVAG00000016746	prdm1b	56	55.967	ENSONIG00000014709	-	59	55.215	Oreochromis_niloticus
ENSCVAG00000016746	prdm1b	98	66.139	ENSORLG00000010025	prdm1b	99	65.397	Oryzias_latipes
ENSCVAG00000016746	prdm1b	90	67.470	ENSORLG00015009022	prdm1b	92	67.126	Oryzias_latipes_hsok
ENSCVAG00000016746	prdm1b	99	54.571	ENSPKIG00000022335	prdm1b	97	54.648	Paramormyrops_kingsleyae
ENSCVAG00000016746	prdm1b	89	75.193	ENSPFOG00000003103	prdm1b	54	87.608	Poecilia_formosa
ENSCVAG00000016746	prdm1b	99	82.962	ENSPLAG00000018491	prdm1b	99	83.546	Poecilia_latipinna
ENSCVAG00000016746	prdm1b	99	84.653	ENSPMEG00000007869	prdm1b	99	85.761	Poecilia_mexicana
ENSCVAG00000016746	prdm1b	99	82.989	ENSPREG00000011327	prdm1b	99	82.698	Poecilia_reticulata
ENSCVAG00000016746	prdm1b	92	42.272	ENSPVAG00000011732	PRDM1	93	42.154	Pteropus_vampyrus
ENSCVAG00000016746	prdm1b	92	63.914	ENSSFOG00015021896	prdm1b	92	63.150	Scleropages_formosus
ENSCVAG00000016746	prdm1b	100	77.732	ENSSMAG00000020467	prdm1b	100	77.593	Scophthalmus_maximus
ENSCVAG00000016746	prdm1b	92	34.651	ENSSMAG00000017518	-	57	53.818	Scophthalmus_maximus
ENSCVAG00000016746	prdm1b	99	78.400	ENSSDUG00000020610	prdm1b	99	78.914	Seriola_dumerili
ENSCVAG00000016746	prdm1b	61	63.889	ENSSDUG00000000524	-	59	55.357	Seriola_dumerili
ENSCVAG00000016746	prdm1b	61	62.500	ENSSLDG00000001957	-	59	54.762	Seriola_lalandi_dorsalis
ENSCVAG00000016746	prdm1b	100	79.806	ENSSLDG00000021973	prdm1b	100	79.530	Seriola_lalandi_dorsalis
ENSCVAG00000016746	prdm1b	99	77.524	ENSSPAG00000000803	prdm1b	99	78.956	Stegastes_partitus
ENSCVAG00000016746	prdm1b	93	40.082	ENSSPAG00000009830	-	58	53.846	Stegastes_partitus
ENSCVAG00000016746	prdm1b	96	83.796	ENSXCOG00000018920	prdm1b	98	83.504	Xiphophorus_couchianus
ENSCVAG00000016746	prdm1b	100	77.839	ENSXMAG00000016765	prdm1b	95	80.862	Xiphophorus_maculatus