EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000016748 (Gene tree)
Gene ID: 107082480
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 12295 bases
Position: chrKL652554.1:596723-609017
Accession: 107082480
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000029173	EXOSC1	PF10447.9	9.8e-15	1	1
ENSCVAP00000029173	ECR1_N	PF14382.6	9.9e-10	1	1
ENSCVAP00000029162	ECR1_N	PF14382.6	1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000021886	-	3898	XM_015371179	ENSCVAP00000029173	194 (aa)	XP_015226665	UPI000742C0C7
ENSCVAT00000022180	-	537	-	ENSCVAP00000029162	178 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000016748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000016748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000016748	exosc1	98	76.440	ENSG00000171311	EXOSC1	98	76.440	Homo_sapiens
ENSCVAG00000016748	exosc1	100	89.175	ENSAPOG00000007822	exosc1	100	89.175	Acanthochromis_polyacanthus
ENSCVAG00000016748	exosc1	98	76.963	ENSAMEG00000000129	EXOSC1	98	76.963	Ailuropoda_melanoleuca
ENSCVAG00000016748	exosc1	95	88.108	ENSACIG00000018956	exosc1	91	88.108	Amphilophus_citrinellus
ENSCVAG00000016748	exosc1	100	88.144	ENSAOCG00000010699	exosc1	100	88.144	Amphiprion_ocellaris
ENSCVAG00000016748	exosc1	92	87.117	ENSAPEG00000012690	exosc1	97	87.117	Amphiprion_percula
ENSCVAG00000016748	exosc1	100	88.144	ENSATEG00000018683	exosc1	100	88.144	Anabas_testudineus
ENSCVAG00000016748	exosc1	99	70.466	ENSACAG00000002101	EXOSC1	99	70.466	Anolis_carolinensis
ENSCVAG00000016748	exosc1	98	76.440	ENSANAG00000034669	EXOSC1	98	76.440	Aotus_nancymaae
ENSCVAG00000016748	exosc1	100	88.144	ENSACLG00000021243	exosc1	100	88.144	Astatotilapia_calliptera
ENSCVAG00000016748	exosc1	100	85.567	ENSAMXG00000011116	exosc1	100	85.567	Astyanax_mexicanus
ENSCVAG00000016748	exosc1	98	76.963	ENSBTAG00000012699	EXOSC1	98	76.963	Bos_taurus
ENSCVAG00000016748	exosc1	94	35.079	WBGene00012966	exos-1	92	35.079	Caenorhabditis_elegans
ENSCVAG00000016748	exosc1	98	75.916	ENSCJAG00000016586	EXOSC1	98	75.916	Callithrix_jacchus
ENSCVAG00000016748	exosc1	99	76.042	ENSCAFG00000009068	EXOSC1	93	76.042	Canis_familiaris
ENSCVAG00000016748	exosc1	99	76.042	ENSCAFG00020006002	EXOSC1	93	76.042	Canis_lupus_dingo
ENSCVAG00000016748	exosc1	98	76.963	ENSCHIG00000015253	EXOSC1	98	76.963	Capra_hircus
ENSCVAG00000016748	exosc1	98	75.916	ENSTSYG00000000760	EXOSC1	98	75.916	Carlito_syrichta
ENSCVAG00000016748	exosc1	99	76.042	ENSCPOG00000001173	EXOSC1	98	76.042	Cavia_porcellus
ENSCVAG00000016748	exosc1	98	41.808	ENSCCAG00000023986	EXOSC1	98	41.808	Cebus_capucinus
ENSCVAG00000016748	exosc1	98	76.440	ENSCATG00000034114	EXOSC1	98	76.440	Cercocebus_atys
ENSCVAG00000016748	exosc1	98	76.440	ENSCLAG00000002463	EXOSC1	98	76.440	Chinchilla_lanigera
ENSCVAG00000016748	exosc1	98	75.916	ENSCSAG00000005870	EXOSC1	98	75.916	Chlorocebus_sabaeus
ENSCVAG00000016748	exosc1	95	64.130	ENSCHOG00000006477	EXOSC1	98	64.130	Choloepus_hoffmanni
ENSCVAG00000016748	exosc1	60	67.290	ENSCPBG00000011949	EXOSC1	88	67.290	Chrysemys_picta_bellii
ENSCVAG00000016748	exosc1	96	51.064	ENSCING00000022734	-	90	51.064	Ciona_intestinalis
ENSCVAG00000016748	exosc1	99	54.404	ENSCSAVG00000010865	-	98	54.404	Ciona_savignyi
ENSCVAG00000016748	exosc1	98	76.440	ENSCANG00000034159	EXOSC1	98	76.440	Colobus_angolensis_palliatus
ENSCVAG00000016748	exosc1	98	75.393	ENSCGRG00001000335	Exosc1	98	75.393	Cricetulus_griseus_chok1gshd
ENSCVAG00000016748	exosc1	98	75.393	ENSCGRG00000011602	Exosc1	98	75.393	Cricetulus_griseus_crigri
ENSCVAG00000016748	exosc1	100	75.258	ENSCSEG00000007895	exosc1	97	75.258	Cynoglossus_semilaevis
ENSCVAG00000016748	exosc1	100	85.567	ENSDARG00000059841	exosc1	100	85.567	Danio_rerio
ENSCVAG00000016748	exosc1	74	74.483	ENSDNOG00000007983	EXOSC1	98	74.483	Dasypus_novemcinctus
ENSCVAG00000016748	exosc1	98	75.916	ENSDORG00000016528	Exosc1	98	75.916	Dipodomys_ordii
ENSCVAG00000016748	exosc1	95	47.368	FBgn0032346	Csl4	92	47.368	Drosophila_melanogaster
ENSCVAG00000016748	exosc1	98	74.869	ENSETEG00000002469	-	98	74.869	Echinops_telfairi
ENSCVAG00000016748	exosc1	97	60.938	ENSEBUG00000008164	exosc1	96	60.938	Eptatretus_burgeri
ENSCVAG00000016748	exosc1	98	67.539	ENSEASG00005008684	EXOSC1	98	67.539	Equus_asinus_asinus
ENSCVAG00000016748	exosc1	64	56.140	ENSECAG00000010621	EXOSC1	68	56.140	Equus_caballus
ENSCVAG00000016748	exosc1	98	75.916	ENSEEUG00000005647	EXOSC1	98	75.916	Erinaceus_europaeus
ENSCVAG00000016748	exosc1	99	84.772	ENSELUG00000017369	exosc1	87	84.772	Esox_lucius
ENSCVAG00000016748	exosc1	98	76.963	ENSFCAG00000040563	EXOSC1	98	75.862	Felis_catus
ENSCVAG00000016748	exosc1	98	73.822	ENSFALG00000008450	EXOSC1	98	73.822	Ficedula_albicollis
ENSCVAG00000016748	exosc1	98	76.963	ENSFDAG00000000846	EXOSC1	98	76.963	Fukomys_damarensis
ENSCVAG00000016748	exosc1	100	95.361	ENSFHEG00000009154	exosc1	100	95.361	Fundulus_heteroclitus
ENSCVAG00000016748	exosc1	100	87.629	ENSGMOG00000008993	exosc1	100	87.629	Gadus_morhua
ENSCVAG00000016748	exosc1	98	62.304	ENSGALG00000039917	EXOSC1	99	79.310	Gallus_gallus
ENSCVAG00000016748	exosc1	100	95.361	ENSGAFG00000010265	exosc1	95	95.361	Gambusia_affinis
ENSCVAG00000016748	exosc1	100	86.082	ENSGACG00000018936	exosc1	100	86.082	Gasterosteus_aculeatus
ENSCVAG00000016748	exosc1	98	73.822	ENSGAGG00000019192	EXOSC1	98	73.822	Gopherus_agassizii
ENSCVAG00000016748	exosc1	98	65.445	ENSGGOG00000003099	EXOSC1	98	65.445	Gorilla_gorilla
ENSCVAG00000016748	exosc1	100	88.144	ENSHBUG00000017857	exosc1	100	88.144	Haplochromis_burtoni
ENSCVAG00000016748	exosc1	98	76.440	ENSHGLG00000016927	EXOSC1	98	76.440	Heterocephalus_glaber_female
ENSCVAG00000016748	exosc1	98	76.440	ENSHGLG00100012208	EXOSC1	98	76.440	Heterocephalus_glaber_male
ENSCVAG00000016748	exosc1	100	87.629	ENSHCOG00000019882	exosc1	100	87.629	Hippocampus_comes
ENSCVAG00000016748	exosc1	100	84.021	ENSIPUG00000007685	exosc1	100	84.021	Ictalurus_punctatus
ENSCVAG00000016748	exosc1	99	75.521	ENSSTOG00000006615	EXOSC1	98	75.521	Ictidomys_tridecemlineatus
ENSCVAG00000016748	exosc1	65	63.478	ENSSTOG00000029860	-	91	62.185	Ictidomys_tridecemlineatus
ENSCVAG00000016748	exosc1	98	76.440	ENSJJAG00000013311	Exosc1	98	76.440	Jaculus_jaculus
ENSCVAG00000016748	exosc1	100	87.629	ENSKMAG00000001202	exosc1	82	87.629	Kryptolebias_marmoratus
ENSCVAG00000016748	exosc1	100	88.144	ENSLBEG00000011448	exosc1	100	88.144	Labrus_bergylta
ENSCVAG00000016748	exosc1	100	62.000	ENSLOCG00000003776	exosc1	100	62.500	Lepisosteus_oculatus
ENSCVAG00000016748	exosc1	98	76.440	ENSLAFG00000015983	EXOSC1	98	76.440	Loxodonta_africana
ENSCVAG00000016748	exosc1	98	76.440	ENSMFAG00000001493	EXOSC1	98	76.440	Macaca_fascicularis
ENSCVAG00000016748	exosc1	98	76.440	ENSMMUG00000020028	EXOSC1	98	75.287	Macaca_mulatta
ENSCVAG00000016748	exosc1	98	76.440	ENSMNEG00000029816	EXOSC1	98	76.440	Macaca_nemestrina
ENSCVAG00000016748	exosc1	98	71.728	ENSMLEG00000027643	EXOSC1	98	71.728	Mandrillus_leucophaeus
ENSCVAG00000016748	exosc1	100	89.691	ENSMAMG00000012200	exosc1	100	89.691	Mastacembelus_armatus
ENSCVAG00000016748	exosc1	100	88.144	ENSMZEG00005007042	exosc1	100	88.144	Maylandia_zebra
ENSCVAG00000016748	exosc1	98	65.445	ENSMAUG00000020462	-	98	65.445	Mesocricetus_auratus
ENSCVAG00000016748	exosc1	99	76.042	ENSMICG00000007664	EXOSC1	98	75.287	Microcebus_murinus
ENSCVAG00000016748	exosc1	97	70.526	ENSMOCG00000017124	-	97	70.526	Microtus_ochrogaster
ENSCVAG00000016748	exosc1	98	75.393	ENSMOCG00000006004	-	98	75.393	Microtus_ochrogaster
ENSCVAG00000016748	exosc1	99	69.101	ENSMMOG00000021403	exosc1	100	69.101	Mola_mola
ENSCVAG00000016748	exosc1	99	76.166	ENSMODG00000004213	EXOSC1	98	76.166	Monodelphis_domestica
ENSCVAG00000016748	exosc1	95	89.189	ENSMALG00000007061	exosc1	93	89.189	Monopterus_albus
ENSCVAG00000016748	exosc1	98	74.869	MGP_CAROLIEiJ_G0022959	Exosc1	98	74.869	Mus_caroli
ENSCVAG00000016748	exosc1	98	74.869	ENSMUSG00000034321	Exosc1	98	74.869	Mus_musculus
ENSCVAG00000016748	exosc1	98	75.393	MGP_PahariEiJ_G0014449	Exosc1	98	75.393	Mus_pahari
ENSCVAG00000016748	exosc1	98	74.869	MGP_SPRETEiJ_G0023880	Exosc1	98	74.869	Mus_spretus
ENSCVAG00000016748	exosc1	98	76.963	ENSMPUG00000017044	EXOSC1	98	76.963	Mustela_putorius_furo
ENSCVAG00000016748	exosc1	98	76.440	ENSMLUG00000009228	EXOSC1	98	76.440	Myotis_lucifugus
ENSCVAG00000016748	exosc1	98	73.822	ENSNGAG00000022033	Exosc1	98	73.822	Nannospalax_galili
ENSCVAG00000016748	exosc1	100	71.508	ENSNBRG00000024007	exosc1	100	71.508	Neolamprologus_brichardi
ENSCVAG00000016748	exosc1	98	75.916	ENSNLEG00000013872	EXOSC1	98	75.916	Nomascus_leucogenys
ENSCVAG00000016748	exosc1	63	70.536	ENSMEUG00000002246	EXOSC1	97	70.536	Notamacropus_eugenii
ENSCVAG00000016748	exosc1	99	75.000	ENSOPRG00000005065	EXOSC1	98	75.000	Ochotona_princeps
ENSCVAG00000016748	exosc1	98	76.963	ENSODEG00000016709	EXOSC1	98	76.963	Octodon_degus
ENSCVAG00000016748	exosc1	100	87.629	ENSONIG00000017683	exosc1	99	87.629	Oreochromis_niloticus
ENSCVAG00000016748	exosc1	59	85.088	ENSOANG00000006563	EXOSC1	98	82.114	Ornithorhynchus_anatinus
ENSCVAG00000016748	exosc1	99	70.312	ENSOCUG00000026461	-	98	70.312	Oryctolagus_cuniculus
ENSCVAG00000016748	exosc1	98	75.000	ENSOCUG00000011898	-	98	75.000	Oryctolagus_cuniculus
ENSCVAG00000016748	exosc1	100	88.205	ENSORLG00000011595	exosc1	100	88.205	Oryzias_latipes
ENSCVAG00000016748	exosc1	100	88.205	ENSORLG00020005831	exosc1	100	88.205	Oryzias_latipes_hni
ENSCVAG00000016748	exosc1	100	88.205	ENSORLG00015004317	exosc1	100	88.205	Oryzias_latipes_hsok
ENSCVAG00000016748	exosc1	100	74.742	ENSOMEG00000013907	exosc1	99	74.742	Oryzias_melastigma
ENSCVAG00000016748	exosc1	98	75.916	ENSOGAG00000016259	EXOSC1	98	75.916	Otolemur_garnettii
ENSCVAG00000016748	exosc1	98	76.440	ENSOARG00000010136	EXOSC1	98	76.440	Ovis_aries
ENSCVAG00000016748	exosc1	98	71.503	ENSPPAG00000039842	EXOSC1	98	71.503	Pan_paniscus
ENSCVAG00000016748	exosc1	98	76.963	ENSPPRG00000023366	EXOSC1	98	76.963	Panthera_pardus
ENSCVAG00000016748	exosc1	98	76.963	ENSPTIG00000017701	EXOSC1	98	76.963	Panthera_tigris_altaica
ENSCVAG00000016748	exosc1	98	76.440	ENSPTRG00000002808	EXOSC1	98	76.440	Pan_troglodytes
ENSCVAG00000016748	exosc1	98	76.440	ENSPANG00000021324	EXOSC1	98	76.440	Papio_anubis
ENSCVAG00000016748	exosc1	100	85.567	ENSPKIG00000016037	exosc1	100	85.567	Paramormyrops_kingsleyae
ENSCVAG00000016748	exosc1	91	63.158	ENSPSIG00000013571	EXOSC1	98	73.554	Pelodiscus_sinensis
ENSCVAG00000016748	exosc1	100	76.289	ENSPMGG00000014002	exosc1	100	76.289	Periophthalmus_magnuspinnatus
ENSCVAG00000016748	exosc1	98	75.393	ENSPEMG00000010710	-	98	75.393	Peromyscus_maniculatus_bairdii
ENSCVAG00000016748	exosc1	96	65.241	ENSPMAG00000000195	exosc1	95	65.241	Petromyzon_marinus
ENSCVAG00000016748	exosc1	99	75.000	ENSPCIG00000002210	EXOSC1	97	75.000	Phascolarctos_cinereus
ENSCVAG00000016748	exosc1	100	96.392	ENSPFOG00000006755	exosc1	95	96.392	Poecilia_formosa
ENSCVAG00000016748	exosc1	100	96.392	ENSPLAG00000005880	exosc1	100	96.392	Poecilia_latipinna
ENSCVAG00000016748	exosc1	100	96.392	ENSPMEG00000015598	exosc1	95	96.392	Poecilia_mexicana
ENSCVAG00000016748	exosc1	100	83.505	ENSPREG00000000405	exosc1	94	83.505	Poecilia_reticulata
ENSCVAG00000016748	exosc1	99	76.042	ENSPPYG00000002531	EXOSC1	98	76.042	Pongo_abelii
ENSCVAG00000016748	exosc1	98	75.393	ENSPCAG00000009135	EXOSC1	98	75.393	Procavia_capensis
ENSCVAG00000016748	exosc1	98	71.204	ENSPCOG00000027539	EXOSC1	98	71.204	Propithecus_coquereli
ENSCVAG00000016748	exosc1	98	76.440	ENSPVAG00000003372	EXOSC1	98	76.440	Pteropus_vampyrus
ENSCVAG00000016748	exosc1	100	88.144	ENSPNYG00000021745	exosc1	100	88.144	Pundamilia_nyererei
ENSCVAG00000016748	exosc1	100	84.536	ENSPNAG00000001944	exosc1	100	84.536	Pygocentrus_nattereri
ENSCVAG00000016748	exosc1	98	75.393	ENSRNOG00000048708	Exosc1	98	75.393	Rattus_norvegicus
ENSCVAG00000016748	exosc1	98	76.440	ENSRBIG00000035618	EXOSC1	98	76.440	Rhinopithecus_bieti
ENSCVAG00000016748	exosc1	98	76.440	ENSRROG00000032589	EXOSC1	98	75.287	Rhinopithecus_roxellana
ENSCVAG00000016748	exosc1	65	36.810	YNL232W	CSL4	55	36.810	Saccharomyces_cerevisiae
ENSCVAG00000016748	exosc1	98	76.440	ENSSBOG00000000359	EXOSC1	98	76.440	Saimiri_boliviensis_boliviensis
ENSCVAG00000016748	exosc1	75	82.993	ENSSHAG00000018219	EXOSC1	100	82.993	Sarcophilus_harrisii
ENSCVAG00000016748	exosc1	100	85.052	ENSSFOG00015009069	exosc1	100	85.052	Scleropages_formosus
ENSCVAG00000016748	exosc1	100	82.474	ENSSFOG00015016289	-	100	82.474	Scleropages_formosus
ENSCVAG00000016748	exosc1	100	88.660	ENSSMAG00000003721	exosc1	100	88.660	Scophthalmus_maximus
ENSCVAG00000016748	exosc1	100	89.326	ENSSDUG00000002993	exosc1	100	89.326	Seriola_dumerili
ENSCVAG00000016748	exosc1	100	89.326	ENSSLDG00000025181	exosc1	100	89.326	Seriola_lalandi_dorsalis
ENSCVAG00000016748	exosc1	98	64.398	ENSSARG00000000162	EXOSC1	98	64.398	Sorex_araneus
ENSCVAG00000016748	exosc1	98	70.681	ENSSPUG00000012263	EXOSC1	98	70.681	Sphenodon_punctatus
ENSCVAG00000016748	exosc1	100	88.764	ENSSPAG00000016792	exosc1	84	88.764	Stegastes_partitus
ENSCVAG00000016748	exosc1	98	76.440	ENSSSCG00000010518	EXOSC1	89	76.440	Sus_scrofa
ENSCVAG00000016748	exosc1	98	73.298	ENSTGUG00000009692	EXOSC1	98	73.298	Taeniopygia_guttata
ENSCVAG00000016748	exosc1	98	78.947	ENSTRUG00000007706	exosc1	98	78.947	Takifugu_rubripes
ENSCVAG00000016748	exosc1	98	77.720	ENSTNIG00000014079	exosc1	97	77.720	Tetraodon_nigroviridis
ENSCVAG00000016748	exosc1	98	71.204	ENSTBEG00000006011	EXOSC1	98	71.204	Tupaia_belangeri
ENSCVAG00000016748	exosc1	94	77.596	ENSTTRG00000009887	EXOSC1	99	77.596	Tursiops_truncatus
ENSCVAG00000016748	exosc1	98	60.714	ENSUAMG00000010266	EXOSC1	98	60.714	Ursus_americanus
ENSCVAG00000016748	exosc1	98	61.780	ENSUMAG00000022002	EXOSC1	98	61.780	Ursus_maritimus
ENSCVAG00000016748	exosc1	98	76.440	ENSVVUG00000023192	EXOSC1	62	76.440	Vulpes_vulpes
ENSCVAG00000016748	exosc1	99	72.539	ENSXETG00000003434	exosc1	99	72.539	Xenopus_tropicalis
ENSCVAG00000016748	exosc1	62	99.174	ENSXCOG00000014499	exosc1	93	99.174	Xiphophorus_couchianus
ENSCVAG00000016748	exosc1	100	84.021	ENSXMAG00000023382	exosc1	94	84.021	Xiphophorus_maculatus