EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000016981 (Gene tree)
Gene ID: 107102835
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 16651 bases
Position: chrKL653828.1:119937-136587
Accession: 107102835
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000014364	RRM_1	PF00076.22	9.8e-13	1	1
ENSCVAP00000029324	RRM_1	PF00076.22	9.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000022169	-	1543	XM_015402272	ENSCVAP00000029324	324 (aa)	XP_015257758	UPI00074272F5
ENSCVAT00000031083	-	1621	XM_015402270	ENSCVAP00000014364	324 (aa)	XP_015257756	UPI00074272F5

Gene Model

Click here to download ENSCVAG00000016981's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000016981's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000016981	-	96	61.129	ENSCVAG00000002797	-	85	66.406
ENSCVAG00000016981	-	85	48.136	ENSCVAG00000013624	-	83	52.191
ENSCVAG00000016981	-	66	57.456	ENSCVAG00000018104	-	74	59.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000016981	-	65	56.944	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSCVAG00000016981	-	89	79.381	ENSAPOG00000006963	hnrnpc	81	85.827	Acanthochromis_polyacanthus
ENSCVAG00000016981	-	78	81.538	ENSACIG00000000270	-	82	88.940	Amphilophus_citrinellus
ENSCVAG00000016981	-	97	85.443	ENSACIG00000016568	-	99	85.256	Amphilophus_citrinellus
ENSCVAG00000016981	-	100	84.356	ENSAOCG00000021616	-	100	86.503	Amphiprion_ocellaris
ENSCVAG00000016981	-	89	79.725	ENSAOCG00000003896	-	81	86.220	Amphiprion_ocellaris
ENSCVAG00000016981	-	89	79.725	ENSAPEG00000001489	-	81	86.220	Amphiprion_percula
ENSCVAG00000016981	-	81	90.602	ENSAPEG00000019962	-	85	90.977	Amphiprion_percula
ENSCVAG00000016981	-	81	91.011	ENSATEG00000018006	-	83	91.011	Anabas_testudineus
ENSCVAG00000016981	-	78	82.558	ENSATEG00000011734	-	84	85.039	Anabas_testudineus
ENSCVAG00000016981	-	65	53.333	ENSAPLG00000015574	RALYL	75	55.405	Anas_platyrhynchos
ENSCVAG00000016981	-	65	54.667	ENSACAG00000028464	RALYL	74	55.856	Anolis_carolinensis
ENSCVAG00000016981	-	65	57.009	ENSANAG00000023383	RALYL	75	56.279	Aotus_nancymaae
ENSCVAG00000016981	-	87	74.737	ENSACLG00000000995	-	82	82.745	Astatotilapia_calliptera
ENSCVAG00000016981	-	81	87.640	ENSACLG00000005707	-	90	88.390	Astatotilapia_calliptera
ENSCVAG00000016981	-	87	74.386	ENSACLG00000013636	-	84	82.353	Astatotilapia_calliptera
ENSCVAG00000016981	-	88	62.021	ENSAMXG00000042946	hnrnpc	99	77.041	Astyanax_mexicanus
ENSCVAG00000016981	-	83	76.103	ENSAMXG00000034915	zgc:55733	86	76.494	Astyanax_mexicanus
ENSCVAG00000016981	-	65	57.009	ENSCJAG00000000402	RALYL	75	56.279	Callithrix_jacchus
ENSCVAG00000016981	-	65	54.955	ENSCPOG00000012314	RALYL	74	54.911	Cavia_porcellus
ENSCVAG00000016981	-	65	57.009	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSCVAG00000016981	-	65	56.944	ENSCATG00000042145	RALYL	75	56.279	Cercocebus_atys
ENSCVAG00000016981	-	65	54.464	ENSCLAG00000005228	RALYL	74	54.911	Chinchilla_lanigera
ENSCVAG00000016981	-	65	53.333	ENSCHOG00000013228	RALYL	74	52.703	Choloepus_hoffmanni
ENSCVAG00000016981	-	65	56.944	ENSCANG00000039144	RALYL	75	56.279	Colobus_angolensis_palliatus
ENSCVAG00000016981	-	65	55.111	ENSCGRG00001009241	Ralyl	74	55.405	Cricetulus_griseus_chok1gshd
ENSCVAG00000016981	-	81	84.411	ENSCSEG00000021349	-	78	85.771	Cynoglossus_semilaevis
ENSCVAG00000016981	-	68	76.444	ENSCSEG00000019769	-	74	76.923	Cynoglossus_semilaevis
ENSCVAG00000016981	-	76	80.894	ENSDARG00000053810	hnrnpc	96	75.000	Danio_rerio
ENSCVAG00000016981	-	83	77.122	ENSDARG00000103845	zgc:55733	90	76.800	Danio_rerio
ENSCVAG00000016981	-	65	55.111	ENSDORG00000003721	Ralyl	74	56.306	Dipodomys_ordii
ENSCVAG00000016981	-	50	56.647	ENSETEG00000014028	RALYL	81	60.377	Echinops_telfairi
ENSCVAG00000016981	-	90	40.667	ENSEBUG00000006049	RALYL	73	49.289	Eptatretus_burgeri
ENSCVAG00000016981	-	93	39.748	ENSEBUG00000012363	hnrnpc	69	43.548	Eptatretus_burgeri
ENSCVAG00000016981	-	65	55.556	ENSEEUG00000007202	RALYL	76	56.364	Erinaceus_europaeus
ENSCVAG00000016981	-	81	76.838	ENSELUG00000004132	-	99	75.000	Esox_lucius
ENSCVAG00000016981	-	77	78.113	ENSELUG00000007714	-	88	75.769	Esox_lucius
ENSCVAG00000016981	-	65	56.944	ENSFALG00000008647	RALYL	96	56.682	Ficedula_albicollis
ENSCVAG00000016981	-	97	90.881	ENSFHEG00000007278	-	99	88.000	Fundulus_heteroclitus
ENSCVAG00000016981	-	87	73.611	ENSFHEG00000003605	-	83	76.562	Fundulus_heteroclitus
ENSCVAG00000016981	-	65	57.009	ENSGALG00000036938	RALYL	75	54.425	Gallus_gallus
ENSCVAG00000016981	-	87	73.611	ENSGAFG00000020486	-	80	81.651	Gambusia_affinis
ENSCVAG00000016981	-	97	94.904	ENSGAFG00000020992	-	99	93.871	Gambusia_affinis
ENSCVAG00000016981	-	67	72.000	ENSGACG00000018932	-	85	71.493	Gasterosteus_aculeatus
ENSCVAG00000016981	-	100	77.015	ENSGACG00000017772	-	96	88.800	Gasterosteus_aculeatus
ENSCVAG00000016981	-	65	56.944	ENSGGOG00000000841	RALYL	75	56.279	Gorilla_gorilla
ENSCVAG00000016981	-	87	75.088	ENSHBUG00000018342	-	82	83.137	Haplochromis_burtoni
ENSCVAG00000016981	-	100	84.709	ENSHBUG00000010527	-	100	83.792	Haplochromis_burtoni
ENSCVAG00000016981	-	65	54.018	ENSHGLG00000004866	RALYL	74	55.455	Heterocephalus_glaber_female
ENSCVAG00000016981	-	65	54.018	ENSHGLG00100017480	RALYL	74	55.455	Heterocephalus_glaber_male
ENSCVAG00000016981	-	80	81.685	ENSHCOG00000012333	hnrnpc	91	81.655	Hippocampus_comes
ENSCVAG00000016981	-	98	69.375	ENSIPUG00000008666	zgc:55733	99	76.724	Ictalurus_punctatus
ENSCVAG00000016981	-	79	78.378	ENSIPUG00000011271	hnrnpc	99	81.579	Ictalurus_punctatus
ENSCVAG00000016981	-	65	54.667	ENSSTOG00000012583	RALYL	77	54.867	Ictidomys_tridecemlineatus
ENSCVAG00000016981	-	83	78.309	ENSKMAG00000011170	-	83	82.308	Kryptolebias_marmoratus
ENSCVAG00000016981	-	100	86.850	ENSKMAG00000018265	-	100	87.462	Kryptolebias_marmoratus
ENSCVAG00000016981	-	100	81.231	ENSLBEG00000006193	-	100	82.154	Labrus_bergylta
ENSCVAG00000016981	-	93	67.398	ENSLBEG00000024418	-	84	76.448	Labrus_bergylta
ENSCVAG00000016981	-	86	73.592	ENSLBEG00000006979	-	85	80.000	Labrus_bergylta
ENSCVAG00000016981	-	82	69.708	ENSLOCG00000002560	hnrnpc	88	69.767	Lepisosteus_oculatus
ENSCVAG00000016981	-	65	56.944	ENSMNEG00000033288	RALYL	75	56.279	Macaca_nemestrina
ENSCVAG00000016981	-	65	56.944	ENSMLEG00000038284	RALYL	75	56.279	Mandrillus_leucophaeus
ENSCVAG00000016981	-	100	82.769	ENSMAMG00000008033	-	100	85.015	Mastacembelus_armatus
ENSCVAG00000016981	-	89	76.207	ENSMAMG00000012236	-	81	85.827	Mastacembelus_armatus
ENSCVAG00000016981	-	100	84.709	ENSMZEG00005024249	-	100	83.792	Maylandia_zebra
ENSCVAG00000016981	-	87	74.737	ENSMZEG00005020460	-	87	78.210	Maylandia_zebra
ENSCVAG00000016981	-	65	55.111	ENSMAUG00000015149	Ralyl	74	55.405	Mesocricetus_auratus
ENSCVAG00000016981	-	65	56.338	ENSMICG00000005558	RALYL	78	77.922	Microcebus_murinus
ENSCVAG00000016981	-	65	55.111	ENSMOCG00000017371	Ralyl	74	55.405	Microtus_ochrogaster
ENSCVAG00000016981	-	90	85.185	ENSMMOG00000019520	-	100	85.811	Mola_mola
ENSCVAG00000016981	-	86	77.660	ENSMMOG00000021465	-	88	83.071	Mola_mola
ENSCVAG00000016981	-	88	68.403	ENSMALG00000007520	-	83	76.587	Monopterus_albus
ENSCVAG00000016981	-	81	85.338	ENSMALG00000014623	-	84	86.090	Monopterus_albus
ENSCVAG00000016981	-	65	55.111	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSCVAG00000016981	-	65	56.000	ENSMPUG00000010724	RALYL	74	55.405	Mustela_putorius_furo
ENSCVAG00000016981	-	65	55.111	ENSNGAG00000013375	Ralyl	76	54.425	Nannospalax_galili
ENSCVAG00000016981	-	100	82.875	ENSNBRG00000015676	-	100	85.321	Neolamprologus_brichardi
ENSCVAG00000016981	-	79	81.467	ENSNBRG00000004912	-	92	81.696	Neolamprologus_brichardi
ENSCVAG00000016981	-	65	56.944	ENSNLEG00000002702	RALYL	70	57.346	Nomascus_leucogenys
ENSCVAG00000016981	-	55	50.000	ENSOPRG00000013650	-	98	48.958	Ochotona_princeps
ENSCVAG00000016981	-	80	49.117	ENSODEG00000001012	RALYL	76	53.509	Octodon_degus
ENSCVAG00000016981	-	77	81.890	ENSONIG00000007859	-	90	81.226	Oreochromis_niloticus
ENSCVAG00000016981	-	100	84.404	ENSONIG00000018350	-	100	84.098	Oreochromis_niloticus
ENSCVAG00000016981	-	100	85.843	ENSORLG00000003144	-	100	85.503	Oryzias_latipes
ENSCVAG00000016981	-	77	72.266	ENSORLG00000009999	-	82	73.828	Oryzias_latipes
ENSCVAG00000016981	-	77	71.875	ENSORLG00020018228	hnrnpc	82	73.438	Oryzias_latipes_hni
ENSCVAG00000016981	-	100	86.145	ENSORLG00015009460	-	100	86.145	Oryzias_latipes_hsok
ENSCVAG00000016981	-	77	72.266	ENSORLG00015019755	-	82	73.828	Oryzias_latipes_hsok
ENSCVAG00000016981	-	77	73.828	ENSOMEG00000020488	-	81	75.000	Oryzias_melastigma
ENSCVAG00000016981	-	100	89.602	ENSOMEG00000022665	-	100	88.685	Oryzias_melastigma
ENSCVAG00000016981	-	65	56.944	ENSPPAG00000038705	RALYL	75	56.279	Pan_paniscus
ENSCVAG00000016981	-	65	59.070	ENSPPRG00000018612	RALYL	73	57.944	Panthera_pardus
ENSCVAG00000016981	-	65	59.070	ENSPTIG00000020331	RALYL	73	57.944	Panthera_tigris_altaica
ENSCVAG00000016981	-	65	56.944	ENSPTRG00000020381	RALYL	75	56.279	Pan_troglodytes
ENSCVAG00000016981	-	65	56.944	ENSPANG00000029305	RALYL	75	56.279	Papio_anubis
ENSCVAG00000016981	-	72	82.773	ENSPKIG00000022837	-	96	76.489	Paramormyrops_kingsleyae
ENSCVAG00000016981	-	81	76.557	ENSPKIG00000008592	-	96	74.455	Paramormyrops_kingsleyae
ENSCVAG00000016981	-	65	54.667	ENSPSIG00000011135	RALYL	75	54.425	Pelodiscus_sinensis
ENSCVAG00000016981	-	95	62.013	ENSPMGG00000017774	-	92	67.544	Periophthalmus_magnuspinnatus
ENSCVAG00000016981	-	68	87.387	ENSPMGG00000013144	-	82	87.156	Periophthalmus_magnuspinnatus
ENSCVAG00000016981	-	65	55.111	ENSPEMG00000016447	Ralyl	74	55.405	Peromyscus_maniculatus_bairdii
ENSCVAG00000016981	-	65	55.702	ENSPMAG00000002407	RALYL	96	54.425	Petromyzon_marinus
ENSCVAG00000016981	-	100	96.605	ENSPFOG00000002643	-	100	96.605	Poecilia_formosa
ENSCVAG00000016981	-	87	73.519	ENSPFOG00000001583	-	82	80.859	Poecilia_formosa
ENSCVAG00000016981	-	87	72.378	ENSPLAG00000015305	-	82	79.216	Poecilia_latipinna
ENSCVAG00000016981	-	100	96.308	ENSPLAG00000000061	-	100	96.308	Poecilia_latipinna
ENSCVAG00000016981	-	100	95.988	ENSPMEG00000016524	-	100	95.988	Poecilia_mexicana
ENSCVAG00000016981	-	87	75.347	ENSPMEG00000004802	-	82	80.859	Poecilia_mexicana
ENSCVAG00000016981	-	81	96.970	ENSPREG00000001852	-	89	96.970	Poecilia_reticulata
ENSCVAG00000016981	-	87	71.080	ENSPREG00000007928	-	82	78.516	Poecilia_reticulata
ENSCVAG00000016981	-	83	46.465	ENSPVAG00000010821	RALYL	78	53.846	Pteropus_vampyrus
ENSCVAG00000016981	-	81	87.640	ENSPNYG00000003747	-	90	88.390	Pundamilia_nyererei
ENSCVAG00000016981	-	81	80.755	ENSPNYG00000020293	-	86	82.745	Pundamilia_nyererei
ENSCVAG00000016981	-	83	72.563	ENSPNAG00000019200	zgc:55733	81	74.219	Pygocentrus_nattereri
ENSCVAG00000016981	-	76	77.823	ENSPNAG00000015686	hnrnpc	89	79.699	Pygocentrus_nattereri
ENSCVAG00000016981	-	65	56.944	ENSRROG00000023925	RALYL	78	77.922	Rhinopithecus_roxellana
ENSCVAG00000016981	-	78	76.806	ENSSFOG00015012924	-	80	96.203	Scleropages_formosus
ENSCVAG00000016981	-	100	68.373	ENSSFOG00015012015	-	81	83.178	Scleropages_formosus
ENSCVAG00000016981	-	95	74.441	ENSSMAG00000013592	-	95	75.962	Scophthalmus_maximus
ENSCVAG00000016981	-	80	89.695	ENSSMAG00000011147	-	81	90.498	Scophthalmus_maximus
ENSCVAG00000016981	-	87	78.322	ENSSDUG00000001723	-	81	85.827	Seriola_dumerili
ENSCVAG00000016981	-	100	86.154	ENSSDUG00000006730	-	100	84.000	Seriola_dumerili
ENSCVAG00000016981	-	85	78.777	ENSSLDG00000007454	-	82	85.433	Seriola_lalandi_dorsalis
ENSCVAG00000016981	-	81	87.170	ENSSLDG00000007474	-	92	89.811	Seriola_lalandi_dorsalis
ENSCVAG00000016981	-	100	87.077	ENSSPAG00000013996	-	100	86.154	Stegastes_partitus
ENSCVAG00000016981	-	86	79.152	ENSSPAG00000023204	-	81	86.614	Stegastes_partitus
ENSCVAG00000016981	-	68	53.419	ENSTGUG00000011689	RALYL	79	54.113	Taeniopygia_guttata
ENSCVAG00000016981	-	91	74.832	ENSTRUG00000020158	-	82	81.746	Takifugu_rubripes
ENSCVAG00000016981	-	78	79.051	ENSTNIG00000000334	-	93	78.906	Tetraodon_nigroviridis
ENSCVAG00000016981	-	78	79.231	ENSTNIG00000007427	-	83	79.297	Tetraodon_nigroviridis
ENSCVAG00000016981	-	65	49.327	ENSTBEG00000005551	RALYL	86	49.772	Tupaia_belangeri
ENSCVAG00000016981	-	80	47.482	ENSTTRG00000015762	RALYL	74	53.704	Tursiops_truncatus
ENSCVAG00000016981	-	65	52.558	ENSVPAG00000008501	RALYL	74	53.521	Vicugna_pacos
ENSCVAG00000016981	-	82	71.587	ENSXCOG00000006552	-	81	72.656	Xiphophorus_couchianus
ENSCVAG00000016981	-	81	96.970	ENSXMAG00000022849	-	86	96.970	Xiphophorus_maculatus
ENSCVAG00000016981	-	87	74.306	ENSXMAG00000009333	-	82	78.125	Xiphophorus_maculatus