EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000016982 (Gene tree)
Gene ID: 107091416
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 5185 bases
Position: chrKL652836.1:78579-83763
Accession: 107091416
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000029310	RRM_1	PF00076.22	4.1e-32	1	2
ENSCVAP00000029310	RRM_1	PF00076.22	4.1e-32	2	2
ENSCVAP00000014341	RRM_1	PF00076.22	1.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000022142	-	995	-	ENSCVAP00000014341	138 (aa)	-	-
ENSCVAT00000022151	-	1909	XM_015385337	ENSCVAP00000029310	296 (aa)	XP_015240823	UPI000742A816

Gene Model

Click here to download ENSCVAG00000016982's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000016982's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000016982	srsf5a	62	36.667	ENSCVAG00000003851	srsf3b	58	37.500
ENSCVAG00000016982	srsf5a	96	64.662	ENSCVAG00000017240	srsf5b	90	51.186
ENSCVAG00000016982	srsf5a	64	37.688	ENSCVAG00000021417	srsf9	73	38.693
ENSCVAG00000016982	srsf5a	98	58.824	ENSCVAG00000001863	SRSF6	93	58.955
ENSCVAG00000016982	srsf5a	97	40.714	ENSCVAG00000005458	-	86	41.146
ENSCVAG00000016982	srsf5a	98	36.879	ENSCVAG00000018617	-	66	41.304

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000016982	srsf5a	97	76.119	ENSAPOG00000017395	srsf5a	77	79.583	Acanthochromis_polyacanthus
ENSCVAG00000016982	srsf5a	96	81.203	ENSACIG00000011892	srsf5a	96	74.101	Amphilophus_citrinellus
ENSCVAG00000016982	srsf5a	97	76.119	ENSAOCG00000014967	srsf5a	78	80.417	Amphiprion_ocellaris
ENSCVAG00000016982	srsf5a	97	76.119	ENSAPEG00000009297	srsf5a	78	80.417	Amphiprion_percula
ENSCVAG00000016982	srsf5a	96	78.947	ENSATEG00000000198	srsf5a	81	81.893	Anabas_testudineus
ENSCVAG00000016982	srsf5a	96	66.667	ENSAPLG00000002469	-	68	68.421	Anas_platyrhynchos
ENSCVAG00000016982	srsf5a	96	69.173	ENSACAG00000029015	-	67	70.745	Anolis_carolinensis
ENSCVAG00000016982	srsf5a	96	84.962	ENSACLG00000027166	srsf5a	80	84.774	Astatotilapia_calliptera
ENSCVAG00000016982	srsf5a	97	76.119	ENSAMXG00000030476	srsf5a	99	65.449	Astyanax_mexicanus
ENSCVAG00000016982	srsf5a	97	68.148	ENSCPBG00000021518	-	95	65.769	Chrysemys_picta_bellii
ENSCVAG00000016982	srsf5a	97	60.145	ENSCSAVG00000011376	-	77	57.513	Ciona_savignyi
ENSCVAG00000016982	srsf5a	96	84.328	ENSCSEG00000008109	srsf5a	83	69.811	Cynoglossus_semilaevis
ENSCVAG00000016982	srsf5a	97	76.119	ENSDARG00000029818	srsf5a	98	67.626	Danio_rerio
ENSCVAG00000016982	srsf5a	96	71.223	ENSELUG00000020439	srsf5a	61	75.661	Esox_lucius
ENSCVAG00000016982	srsf5a	97	65.672	ENSFALG00000005098	-	62	68.617	Ficedula_albicollis
ENSCVAG00000016982	srsf5a	99	91.781	ENSFHEG00000003955	srsf5a	98	91.781	Fundulus_heteroclitus
ENSCVAG00000016982	srsf5a	97	73.134	ENSGMOG00000000869	srsf5a	93	75.661	Gadus_morhua
ENSCVAG00000016982	srsf5a	96	64.662	ENSGALG00000033259	SRSF5A	62	68.085	Gallus_gallus
ENSCVAG00000016982	srsf5a	98	68.148	ENSGAFG00000018237	srsf5a	73	79.757	Gambusia_affinis
ENSCVAG00000016982	srsf5a	96	74.436	ENSGACG00000011761	srsf5a	69	80.319	Gasterosteus_aculeatus
ENSCVAG00000016982	srsf5a	97	68.148	ENSGAGG00000007312	-	95	65.769	Gopherus_agassizii
ENSCVAG00000016982	srsf5a	96	84.211	ENSHBUG00000014048	srsf5a	80	84.362	Haplochromis_burtoni
ENSCVAG00000016982	srsf5a	97	78.358	ENSHCOG00000017557	srsf5a	61	80.423	Hippocampus_comes
ENSCVAG00000016982	srsf5a	97	77.612	ENSIPUG00000003439	srsf5a	67	77.660	Ictalurus_punctatus
ENSCVAG00000016982	srsf5a	97	78.358	ENSKMAG00000014937	srsf5a	71	78.601	Kryptolebias_marmoratus
ENSCVAG00000016982	srsf5a	96	86.861	ENSLBEG00000017153	srsf5a	72	84.293	Labrus_bergylta
ENSCVAG00000016982	srsf5a	96	72.932	ENSLACG00000017874	-	71	73.936	Latimeria_chalumnae
ENSCVAG00000016982	srsf5a	96	75.188	ENSLOCG00000014075	srsf5a	94	70.447	Lepisosteus_oculatus
ENSCVAG00000016982	srsf5a	96	74.436	ENSMAMG00000000192	srsf5a	91	76.208	Mastacembelus_armatus
ENSCVAG00000016982	srsf5a	96	84.211	ENSMZEG00005010485	srsf5a	80	84.362	Maylandia_zebra
ENSCVAG00000016982	srsf5a	97	64.179	ENSMGAG00000011888	-	94	65.497	Meleagris_gallopavo
ENSCVAG00000016982	srsf5a	96	76.692	ENSMMOG00000009793	srsf5a	77	77.366	Mola_mola
ENSCVAG00000016982	srsf5a	97	69.403	ENSMALG00000021194	srsf5a	77	74.583	Monopterus_albus
ENSCVAG00000016982	srsf5a	96	83.459	ENSNBRG00000000771	srsf5a	80	83.951	Neolamprologus_brichardi
ENSCVAG00000016982	srsf5a	96	83.459	ENSONIG00000019583	srsf5a	80	83.951	Oreochromis_niloticus
ENSCVAG00000016982	srsf5a	97	80.597	ENSORLG00000009268	srsf5a	83	81.148	Oryzias_latipes
ENSCVAG00000016982	srsf5a	97	80.597	ENSORLG00020003281	srsf5	83	81.148	Oryzias_latipes_hni
ENSCVAG00000016982	srsf5a	97	80.597	ENSORLG00015023075	srsf5	83	81.148	Oryzias_latipes_hsok
ENSCVAG00000016982	srsf5a	97	79.104	ENSOMEG00000000628	srsf5a	83	81.557	Oryzias_melastigma
ENSCVAG00000016982	srsf5a	96	74.436	ENSPKIG00000002054	srsf5a	66	76.596	Paramormyrops_kingsleyae
ENSCVAG00000016982	srsf5a	96	67.910	ENSPSIG00000008238	-	67	67.725	Pelodiscus_sinensis
ENSCVAG00000016982	srsf5a	96	69.173	ENSPMGG00000020125	srsf5a	54	72.340	Periophthalmus_magnuspinnatus
ENSCVAG00000016982	srsf5a	98	95.556	ENSPFOG00000022993	srsf5a	78	94.024	Poecilia_formosa
ENSCVAG00000016982	srsf5a	98	95.556	ENSPLAG00000005508	srsf5a	78	94.024	Poecilia_latipinna
ENSCVAG00000016982	srsf5a	98	95.556	ENSPMEG00000016339	srsf5a	78	94.422	Poecilia_mexicana
ENSCVAG00000016982	srsf5a	98	96.296	ENSPREG00000018091	srsf5a	79	94.821	Poecilia_reticulata
ENSCVAG00000016982	srsf5a	96	84.211	ENSPNYG00000021245	srsf5a	80	84.362	Pundamilia_nyererei
ENSCVAG00000016982	srsf5a	97	75.373	ENSPNAG00000021333	srsf5a	94	67.133	Pygocentrus_nattereri
ENSCVAG00000016982	srsf5a	96	75.188	ENSSFOG00015008377	srsf5	65	76.596	Scleropages_formosus
ENSCVAG00000016982	srsf5a	96	81.560	ENSSMAG00000010899	srsf5a	82	79.681	Scophthalmus_maximus
ENSCVAG00000016982	srsf5a	97	74.627	ENSSDUG00000006103	srsf5a	79	78.189	Seriola_dumerili
ENSCVAG00000016982	srsf5a	96	75.188	ENSSLDG00000004146	srsf5a	79	78.601	Seriola_lalandi_dorsalis
ENSCVAG00000016982	srsf5a	96	66.917	ENSSPUG00000002052	-	67	67.553	Sphenodon_punctatus
ENSCVAG00000016982	srsf5a	97	74.627	ENSSPAG00000002821	srsf5a	79	78.601	Stegastes_partitus
ENSCVAG00000016982	srsf5a	96	66.917	ENSTGUG00000011492	-	67	68.617	Taeniopygia_guttata
ENSCVAG00000016982	srsf5a	96	84.962	ENSTRUG00000022908	srsf5a	79	82.917	Takifugu_rubripes
ENSCVAG00000016982	srsf5a	96	67.376	ENSXETG00000017937	srsf5a	70	72.340	Xenopus_tropicalis
ENSCVAG00000016982	srsf5a	98	88.321	ENSXCOG00000015338	srsf5a	78	90.612	Xiphophorus_couchianus
ENSCVAG00000016982	srsf5a	98	95.588	ENSXMAG00000012823	srsf5a	79	94.400	Xiphophorus_maculatus