EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000017064 (Gene tree)
Gene ID: 107085026
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 5476 bases
Position: chrKL652506.1:2440139-2445614
Accession: 107085026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000014441	MMR_HSR1	PF01926.23	4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000022268	-	3319	XM_015375153	ENSCVAP00000014441	222 (aa)	XP_015230639	UPI0007429736

Gene Model

Click here to download ENSCVAG00000017064's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000017064's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000017064	si:dkey-34d22.5	76	45.833	ENSCVAG00000008276	RAB15	82	49.505
ENSCVAG00000017064	si:dkey-34d22.5	77	41.520	ENSCVAG00000022649	-	84	41.520
ENSCVAG00000017064	si:dkey-34d22.5	77	40.936	ENSCVAG00000022249	rab6a	78	40.936
ENSCVAG00000017064	si:dkey-34d22.5	91	33.495	ENSCVAG00000005429	-	93	33.495
ENSCVAG00000017064	si:dkey-34d22.5	74	41.071	ENSCVAG00000016312	rab9a	77	41.071
ENSCVAG00000017064	si:dkey-34d22.5	67	41.060	ENSCVAG00000019227	zgc:101559	63	41.060
ENSCVAG00000017064	si:dkey-34d22.5	97	38.462	ENSCVAG00000009222	zgc:171927	98	38.462
ENSCVAG00000017064	si:dkey-34d22.5	85	39.362	ENSCVAG00000010727	rab4a	86	39.362
ENSCVAG00000017064	si:dkey-34d22.5	77	37.427	ENSCVAG00000019751	-	77	37.427
ENSCVAG00000017064	si:dkey-34d22.5	87	42.564	ENSCVAG00000022353	rab14	89	42.564
ENSCVAG00000017064	si:dkey-34d22.5	75	43.713	ENSCVAG00000015451	rab18a	80	43.713
ENSCVAG00000017064	si:dkey-34d22.5	97	38.426	ENSCVAG00000012806	rab35b	98	38.426
ENSCVAG00000017064	si:dkey-34d22.5	95	34.742	ENSCVAG00000004751	rab6bb	93	34.742
ENSCVAG00000017064	si:dkey-34d22.5	75	31.579	ENSCVAG00000004658	rasd4	78	31.579
ENSCVAG00000017064	si:dkey-34d22.5	74	40.828	ENSCVAG00000002953	RAB9A	83	40.828
ENSCVAG00000017064	si:dkey-34d22.5	75	41.916	ENSCVAG00000018085	rab30	80	41.916
ENSCVAG00000017064	si:dkey-34d22.5	75	36.145	ENSCVAG00000008239	rab5aa	75	36.145
ENSCVAG00000017064	si:dkey-34d22.5	75	34.731	ENSCVAG00000011432	rabl2	72	34.731
ENSCVAG00000017064	si:dkey-34d22.5	75	30.952	ENSCVAG00000006083	si:cabz01085950.1	82	30.952
ENSCVAG00000017064	si:dkey-34d22.5	80	35.393	ENSCVAG00000020003	rab25b	84	36.047
ENSCVAG00000017064	si:dkey-34d22.5	75	36.747	ENSCVAG00000009550	rab5c	88	34.634
ENSCVAG00000017064	si:dkey-34d22.5	98	50.917	ENSCVAG00000015862	-	98	50.917
ENSCVAG00000017064	si:dkey-34d22.5	71	36.025	ENSCVAG00000001150	si:dkey-13a21.4	77	36.025
ENSCVAG00000017064	si:dkey-34d22.5	98	50.459	ENSCVAG00000014915	RAB39B	98	50.459
ENSCVAG00000017064	si:dkey-34d22.5	74	39.645	ENSCVAG00000021826	rab9b	82	39.645
ENSCVAG00000017064	si:dkey-34d22.5	71	36.943	ENSCVAG00000018191	rab34a	59	36.943
ENSCVAG00000017064	si:dkey-34d22.5	77	42.105	ENSCVAG00000001618	rab41	77	42.105
ENSCVAG00000017064	si:dkey-34d22.5	95	34.884	ENSCVAG00000020016	rab11al	97	34.884
ENSCVAG00000017064	si:dkey-34d22.5	75	34.731	ENSCVAG00000018433	rab22a	84	34.731
ENSCVAG00000017064	si:dkey-34d22.5	91	32.850	ENSCVAG00000000281	RAB7A	94	32.850
ENSCVAG00000017064	si:dkey-34d22.5	77	36.842	ENSCVAG00000017021	-	77	36.842
ENSCVAG00000017064	si:dkey-34d22.5	80	34.831	ENSCVAG00000008126	-	82	34.831
ENSCVAG00000017064	si:dkey-34d22.5	78	42.045	ENSCVAG00000014416	-	82	42.045
ENSCVAG00000017064	si:dkey-34d22.5	71	32.911	ENSCVAG00000001281	rhebl1	84	32.911
ENSCVAG00000017064	si:dkey-34d22.5	71	36.306	ENSCVAG00000020501	rab23	75	35.220
ENSCVAG00000017064	si:dkey-34d22.5	69	32.026	ENSCVAG00000006062	KRAS	98	30.159
ENSCVAG00000017064	si:dkey-34d22.5	90	38.235	ENSCVAG00000012889	rab6ba	94	38.235
ENSCVAG00000017064	si:dkey-34d22.5	81	38.378	ENSCVAG00000011665	rab33a	66	38.378
ENSCVAG00000017064	si:dkey-34d22.5	97	35.185	ENSCVAG00000017623	rab2a	99	35.185
ENSCVAG00000017064	si:dkey-34d22.5	75	41.317	ENSCVAG00000022585	-	80	41.317
ENSCVAG00000017064	si:dkey-34d22.5	81	34.615	ENSCVAG00000014038	RAB29	85	34.615
ENSCVAG00000017064	si:dkey-34d22.5	70	31.410	ENSCVAG00000008389	si:ch73-116o1.2	79	31.548
ENSCVAG00000017064	si:dkey-34d22.5	71	31.210	ENSCVAG00000004027	rheb	84	31.210
ENSCVAG00000017064	si:dkey-34d22.5	74	30.303	ENSCVAG00000014662	-	78	30.303
ENSCVAG00000017064	si:dkey-34d22.5	67	39.474	ENSCVAG00000000862	-	67	39.474
ENSCVAG00000017064	si:dkey-34d22.5	97	33.486	ENSCVAG00000013878	rab11a	95	33.486
ENSCVAG00000017064	si:dkey-34d22.5	97	36.574	ENSCVAG00000022799	-	98	36.574
ENSCVAG00000017064	si:dkey-34d22.5	97	32.883	ENSCVAG00000019718	-	95	32.883
ENSCVAG00000017064	si:dkey-34d22.5	77	41.279	ENSCVAG00000003537	si:dkey-16l2.16	80	41.279
ENSCVAG00000017064	si:dkey-34d22.5	72	40.994	ENSCVAG00000003539	rab12	64	40.994
ENSCVAG00000017064	si:dkey-34d22.5	71	33.544	ENSCVAG00000008670	hrasb	88	32.749

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000017064	si:dkey-34d22.5	100	84.685	ENSACIG00000016958	si:dkey-34d22.5	100	84.685	Amphilophus_citrinellus
ENSCVAG00000017064	si:dkey-34d22.5	100	84.234	ENSATEG00000010784	si:dkey-34d22.5	86	84.234	Anabas_testudineus
ENSCVAG00000017064	si:dkey-34d22.5	99	59.091	ENSCPBG00000011236	-	99	59.091	Chrysemys_picta_bellii
ENSCVAG00000017064	si:dkey-34d22.5	100	74.775	ENSCSEG00000019183	si:dkey-34d22.5	100	74.775	Cynoglossus_semilaevis
ENSCVAG00000017064	si:dkey-34d22.5	83	49.730	ENSDARG00000100379	si:dkey-34d22.2	99	49.730	Danio_rerio
ENSCVAG00000017064	si:dkey-34d22.5	97	57.674	ENSFALG00000001373	-	97	57.674	Ficedula_albicollis
ENSCVAG00000017064	si:dkey-34d22.5	100	93.274	ENSFHEG00000012041	si:dkey-34d22.5	100	93.274	Fundulus_heteroclitus
ENSCVAG00000017064	si:dkey-34d22.5	86	60.938	ENSGALG00000000994	-	90	60.938	Gallus_gallus
ENSCVAG00000017064	si:dkey-34d22.5	100	92.793	ENSGAFG00000008183	si:dkey-34d22.5	100	92.793	Gambusia_affinis
ENSCVAG00000017064	si:dkey-34d22.5	93	58.454	ENSGAGG00000004918	-	99	58.454	Gopherus_agassizii
ENSCVAG00000017064	si:dkey-34d22.5	99	73.303	ENSHCOG00000015692	si:dkey-34d22.5	99	73.303	Hippocampus_comes
ENSCVAG00000017064	si:dkey-34d22.5	100	86.937	ENSKMAG00000012778	si:dkey-34d22.5	100	86.937	Kryptolebias_marmoratus
ENSCVAG00000017064	si:dkey-34d22.5	99	81.448	ENSLBEG00000002926	si:dkey-34d22.5	100	81.448	Labrus_bergylta
ENSCVAG00000017064	si:dkey-34d22.5	88	62.755	ENSLACG00000012674	si:dkey-34d22.5	92	62.755	Latimeria_chalumnae
ENSCVAG00000017064	si:dkey-34d22.5	98	70.507	ENSLOCG00000003467	si:dkey-34d22.5	98	70.507	Lepisosteus_oculatus
ENSCVAG00000017064	si:dkey-34d22.5	100	80.180	ENSMMOG00000006846	si:dkey-34d22.5	100	80.180	Mola_mola
ENSCVAG00000017064	si:dkey-34d22.5	100	79.279	ENSMALG00000013152	si:dkey-34d22.5	100	79.279	Monopterus_albus
ENSCVAG00000017064	si:dkey-34d22.5	99	83.710	ENSORLG00000014099	si:dkey-34d22.5	99	83.710	Oryzias_latipes
ENSCVAG00000017064	si:dkey-34d22.5	99	83.258	ENSORLG00020020277	si:dkey-34d22.5	99	83.258	Oryzias_latipes_hni
ENSCVAG00000017064	si:dkey-34d22.5	99	83.258	ENSORLG00015000142	si:dkey-34d22.5	99	83.258	Oryzias_latipes_hsok
ENSCVAG00000017064	si:dkey-34d22.5	91	92.040	ENSOMEG00000017958	si:dkey-34d22.5	99	86.878	Oryzias_melastigma
ENSCVAG00000017064	si:dkey-34d22.5	99	73.636	ENSPKIG00000021209	si:dkey-34d22.5	99	73.636	Paramormyrops_kingsleyae
ENSCVAG00000017064	si:dkey-34d22.5	91	62.069	ENSPSIG00000006606	-	99	62.069	Pelodiscus_sinensis
ENSCVAG00000017064	si:dkey-34d22.5	99	81.900	ENSPMGG00000001298	-	99	81.900	Periophthalmus_magnuspinnatus
ENSCVAG00000017064	si:dkey-34d22.5	89	59.898	ENSPCIG00000022399	-	88	59.898	Phascolarctos_cinereus
ENSCVAG00000017064	si:dkey-34d22.5	100	91.892	ENSPFOG00000014499	si:dkey-34d22.5	100	91.892	Poecilia_formosa
ENSCVAG00000017064	si:dkey-34d22.5	100	91.892	ENSPLAG00000007773	si:dkey-34d22.5	100	91.892	Poecilia_latipinna
ENSCVAG00000017064	si:dkey-34d22.5	100	91.892	ENSPMEG00000012932	si:dkey-34d22.5	100	91.892	Poecilia_mexicana
ENSCVAG00000017064	si:dkey-34d22.5	89	58.883	ENSSHAG00000008520	-	88	58.883	Sarcophilus_harrisii
ENSCVAG00000017064	si:dkey-34d22.5	89	72.727	ENSSFOG00015012088	rab42	89	72.727	Scleropages_formosus
ENSCVAG00000017064	si:dkey-34d22.5	100	86.036	ENSSLDG00000002646	si:dkey-34d22.5	100	86.036	Seriola_lalandi_dorsalis
ENSCVAG00000017064	si:dkey-34d22.5	99	87.330	ENSSPAG00000012955	si:dkey-34d22.5	99	87.330	Stegastes_partitus
ENSCVAG00000017064	si:dkey-34d22.5	79	54.286	ENSXETG00000020622	rab39a	84	54.286	Xenopus_tropicalis
ENSCVAG00000017064	si:dkey-34d22.5	100	90.991	ENSXCOG00000008410	si:dkey-34d22.5	100	90.991	Xiphophorus_couchianus
ENSCVAG00000017064	si:dkey-34d22.5	100	90.991	ENSXMAG00000029317	si:dkey-34d22.5	100	90.991	Xiphophorus_maculatus