EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000017075 (Gene tree)
Gene ID: 107095386
Gene Symbol: msi2a
Alias: cb746|fi47b09|msi2|wu:fb02d08|wu:fi32d12|wu:fi47b09
Full Name: musashi RNA binding protein 2
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 351067 bases
Position: chrKL653042.1:38417-389483
Accession: 107095386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000014349	RRM_1	PF00076.22	2e-33	1	2
ENSCVAP00000014349	RRM_1	PF00076.22	2e-33	2	2
ENSCVAP00000029319	RRM_1	PF00076.22	2.7e-33	1	2
ENSCVAP00000029319	RRM_1	PF00076.22	2.7e-33	2	2
ENSCVAP00000014372	RRM_1	PF00076.22	3.8e-33	1	2
ENSCVAP00000014372	RRM_1	PF00076.22	3.8e-33	2	2
ENSCVAP00000014339	RRM_1	PF00076.22	3.5e-29	1	2
ENSCVAP00000014339	RRM_1	PF00076.22	3.5e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000022172	-	1355	XM_015391454	ENSCVAP00000014372	388 (aa)	XP_015246940	UPI0004A46563
ENSCVAT00000022171	-	1232	XM_015391459	ENSCVAP00000029319	347 (aa)	XP_015246945	UPI0004A41E31
ENSCVAT00000022133	-	912	-	ENSCVAP00000014339	303 (aa)	-	-
ENSCVAT00000022152	-	1112	XM_015391462	ENSCVAP00000014349	307 (aa)	XP_015246948	UPI000742AB48

Gene Model

Click here to download ENSCVAG00000017075's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000017075's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000017075	msi2a	54	45.946	ENSCVAG00000004853	cirbpa	58	45.946
ENSCVAG00000017075	msi2a	57	41.860	ENSCVAG00000012637	hnrnpa1a	59	40.933
ENSCVAG00000017075	msi2a	55	37.059	ENSCVAG00000008324	-	81	37.158
ENSCVAG00000017075	msi2a	65	45.673	ENSCVAG00000019790	hnrnpd	78	40.000
ENSCVAG00000017075	msi2a	81	41.026	ENSCVAG00000018607	dazap1	55	41.026
ENSCVAG00000017075	msi2a	59	40.217	ENSCVAG00000018995	hnrnpa3	88	33.333
ENSCVAG00000017075	msi2a	58	53.731	ENSCVAG00000017430	zgc:110796	94	53.731
ENSCVAG00000017075	msi2a	62	48.205	ENSCVAG00000002489	-	80	42.802
ENSCVAG00000017075	msi2a	100	70.303	ENSCVAG00000009100	MSI1	100	70.303
ENSCVAG00000017075	msi2a	61	48.148	ENSCVAG00000019772	hnrnpaba	86	40.071
ENSCVAG00000017075	msi2a	75	52.000	ENSCVAG00000017463	-	89	47.907

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000017075	msi2a	100	87.320	ENSG00000153944	MSI2	100	88.308	Homo_sapiens
ENSCVAG00000017075	msi2a	100	99.712	ENSAPOG00000001658	msi2a	100	100.000	Acanthochromis_polyacanthus
ENSCVAG00000017075	msi2a	94	87.879	ENSAMEG00000002697	MSI2	99	88.344	Ailuropoda_melanoleuca
ENSCVAG00000017075	msi2a	99	99.598	ENSACIG00000009475	msi2a	100	94.643	Amphilophus_citrinellus
ENSCVAG00000017075	msi2a	58	91.111	ENSAOCG00000014822	msi2a	69	91.111	Amphiprion_ocellaris
ENSCVAG00000017075	msi2a	100	99.712	ENSAPEG00000007706	msi2a	100	99.712	Amphiprion_percula
ENSCVAG00000017075	msi2a	92	92.803	ENSATEG00000003301	-	95	92.803	Anabas_testudineus
ENSCVAG00000017075	msi2a	100	99.712	ENSATEG00000010498	msi2a	100	100.000	Anabas_testudineus
ENSCVAG00000017075	msi2a	93	93.011	ENSACAG00000005452	MSI2	88	81.356	Anolis_carolinensis
ENSCVAG00000017075	msi2a	100	87.320	ENSANAG00000037827	MSI2	100	86.280	Aotus_nancymaae
ENSCVAG00000017075	msi2a	100	99.135	ENSACLG00000007752	msi2a	100	99.588	Astatotilapia_calliptera
ENSCVAG00000017075	msi2a	100	96.296	ENSAMXG00000010474	msi2b	100	93.041	Astyanax_mexicanus
ENSCVAG00000017075	msi2a	100	96.296	ENSAMXG00000032796	msi2a	100	94.087	Astyanax_mexicanus
ENSCVAG00000017075	msi2a	97	88.435	ENSBTAG00000004406	MSI2	97	86.319	Bos_taurus
ENSCVAG00000017075	msi2a	76	59.514	WBGene00003423	msi-1	73	61.638	Caenorhabditis_elegans
ENSCVAG00000017075	msi2a	100	87.320	ENSCJAG00000013998	MSI2	100	86.280	Callithrix_jacchus
ENSCVAG00000017075	msi2a	94	87.261	ENSCAFG00020025620	MSI2	81	86.875	Canis_lupus_dingo
ENSCVAG00000017075	msi2a	100	86.455	ENSCHIG00000016580	MSI2	100	85.366	Capra_hircus
ENSCVAG00000017075	msi2a	92	87.687	ENSCPOG00000034042	MSI2	95	87.361	Cavia_porcellus
ENSCVAG00000017075	msi2a	100	87.320	ENSCCAG00000033927	MSI2	100	86.280	Cebus_capucinus
ENSCVAG00000017075	msi2a	97	87.798	ENSCATG00000040879	MSI2	100	85.976	Cercocebus_atys
ENSCVAG00000017075	msi2a	100	87.464	ENSCLAG00000014325	MSI2	100	87.896	Chinchilla_lanigera
ENSCVAG00000017075	msi2a	100	87.320	ENSCSAG00000005633	MSI2	100	86.280	Chlorocebus_sabaeus
ENSCVAG00000017075	msi2a	92	65.468	ENSCHOG00000008660	MSI2	83	84.314	Choloepus_hoffmanni
ENSCVAG00000017075	msi2a	93	94.505	ENSCPBG00000009942	MSI2	95	85.985	Chrysemys_picta_bellii
ENSCVAG00000017075	msi2a	89	53.171	ENSCING00000018579	-	90	53.659	Ciona_intestinalis
ENSCVAG00000017075	msi2a	87	53.667	ENSCSAVG00000010397	-	95	53.667	Ciona_savignyi
ENSCVAG00000017075	msi2a	92	91.943	ENSCANG00000036414	MSI2	100	88.308	Colobus_angolensis_palliatus
ENSCVAG00000017075	msi2a	100	86.782	ENSCGRG00001013330	Msi2	100	85.714	Cricetulus_griseus_chok1gshd
ENSCVAG00000017075	msi2a	94	87.613	ENSCGRG00000003141	Msi2	100	88.073	Cricetulus_griseus_crigri
ENSCVAG00000017075	msi2a	80	79.558	ENSCSEG00000013557	msi2a	83	80.423	Cynoglossus_semilaevis
ENSCVAG00000017075	msi2a	99	80.064	ENSCSEG00000003266	-	96	80.064	Cynoglossus_semilaevis
ENSCVAG00000017075	msi2a	61	77.596	ENSCSEG00000013549	msi2a	100	77.596	Cynoglossus_semilaevis
ENSCVAG00000017075	msi2a	100	93.827	ENSDARG00000033901	msi2a	100	89.691	Danio_rerio
ENSCVAG00000017075	msi2a	100	97.119	ENSDARG00000032614	msi2b	100	97.030	Danio_rerio
ENSCVAG00000017075	msi2a	92	92.701	ENSDNOG00000014501	MSI2	95	92.364	Dasypus_novemcinctus
ENSCVAG00000017075	msi2a	55	96.460	ENSDORG00000028440	-	100	96.460	Dipodomys_ordii
ENSCVAG00000017075	msi2a	80	80.328	ENSDORG00000005394	Msi2	79	79.891	Dipodomys_ordii
ENSCVAG00000017075	msi2a	95	56.125	FBgn0260943	Rbp6	88	65.278	Drosophila_melanogaster
ENSCVAG00000017075	msi2a	72	72.368	ENSETEG00000012450	-	64	72.368	Echinops_telfairi
ENSCVAG00000017075	msi2a	91	66.107	ENSEBUG00000006732	msi2a	84	66.107	Eptatretus_burgeri
ENSCVAG00000017075	msi2a	93	92.500	ENSEASG00005002965	MSI2	97	79.830	Equus_asinus_asinus
ENSCVAG00000017075	msi2a	100	85.237	ENSECAG00000011435	MSI2	100	85.634	Equus_caballus
ENSCVAG00000017075	msi2a	89	77.075	ENSEEUG00000007810	MSI2	100	77.075	Erinaceus_europaeus
ENSCVAG00000017075	msi2a	100	95.902	ENSELUG00000001361	msi2b	100	91.899	Esox_lucius
ENSCVAG00000017075	msi2a	99	95.318	ENSELUG00000011747	msi2a	96	95.318	Esox_lucius
ENSCVAG00000017075	msi2a	51	75.000	ENSFCAG00000033787	-	82	75.000	Felis_catus
ENSCVAG00000017075	msi2a	100	87.320	ENSFCAG00000041686	MSI2	100	86.280	Felis_catus
ENSCVAG00000017075	msi2a	94	87.879	ENSFDAG00000016118	MSI2	100	88.344	Fukomys_damarensis
ENSCVAG00000017075	msi2a	100	99.712	ENSFHEG00000000084	msi2a	100	99.712	Fundulus_heteroclitus
ENSCVAG00000017075	msi2a	59	97.115	ENSGMOG00000007596	-	100	97.115	Gadus_morhua
ENSCVAG00000017075	msi2a	100	86.610	ENSGALG00000005567	MSI2	100	87.032	Gallus_gallus
ENSCVAG00000017075	msi2a	100	90.584	ENSGAFG00000006974	msi2a	100	90.584	Gambusia_affinis
ENSCVAG00000017075	msi2a	100	88.934	ENSGAGG00000016542	MSI2	100	84.918	Gopherus_agassizii
ENSCVAG00000017075	msi2a	92	91.943	ENSGGOG00000013182	MSI2	100	88.308	Gorilla_gorilla
ENSCVAG00000017075	msi2a	100	99.135	ENSHBUG00000020800	msi2a	100	99.588	Haplochromis_burtoni
ENSCVAG00000017075	msi2a	100	78.632	ENSHGLG00000012444	MSI2	100	78.963	Heterocephalus_glaber_female
ENSCVAG00000017075	msi2a	76	83.491	ENSHGLG00100003744	MSI2	100	84.135	Heterocephalus_glaber_male
ENSCVAG00000017075	msi2a	55	96.491	ENSHGLG00100004028	-	87	96.491	Heterocephalus_glaber_male
ENSCVAG00000017075	msi2a	97	99.293	ENSHCOG00000000266	msi2a	97	97.337	Hippocampus_comes
ENSCVAG00000017075	msi2a	98	82.422	ENSHCOG00000017241	-	98	70.075	Hippocampus_comes
ENSCVAG00000017075	msi2a	100	96.296	ENSIPUG00000003732	msi2b	100	92.526	Ictalurus_punctatus
ENSCVAG00000017075	msi2a	100	95.062	ENSIPUG00000021097	msi2a	100	95.062	Ictalurus_punctatus
ENSCVAG00000017075	msi2a	92	87.687	ENSSTOG00000007884	MSI2	95	87.361	Ictidomys_tridecemlineatus
ENSCVAG00000017075	msi2a	75	78.453	ENSJJAG00000006292	-	100	76.382	Jaculus_jaculus
ENSCVAG00000017075	msi2a	55	96.460	ENSJJAG00000009467	-	100	96.460	Jaculus_jaculus
ENSCVAG00000017075	msi2a	100	99.588	ENSKMAG00000009494	msi2a	100	99.227	Kryptolebias_marmoratus
ENSCVAG00000017075	msi2a	99	99.667	ENSLBEG00000007061	msi2a	96	99.667	Labrus_bergylta
ENSCVAG00000017075	msi2a	93	86.528	ENSLBEG00000026223	-	100	86.528	Labrus_bergylta
ENSCVAG00000017075	msi2a	55	92.941	ENSLACG00000016798	MSI2	98	92.308	Latimeria_chalumnae
ENSCVAG00000017075	msi2a	100	97.119	ENSLOCG00000004675	msi2b	100	94.330	Lepisosteus_oculatus
ENSCVAG00000017075	msi2a	92	91.943	ENSMFAG00000003775	MSI2	100	88.308	Macaca_fascicularis
ENSCVAG00000017075	msi2a	92	91.943	ENSMMUG00000002069	MSI2	100	88.308	Macaca_mulatta
ENSCVAG00000017075	msi2a	100	87.320	ENSMNEG00000045275	MSI2	100	86.280	Macaca_nemestrina
ENSCVAG00000017075	msi2a	92	91.943	ENSMLEG00000033888	MSI2	100	88.308	Mandrillus_leucophaeus
ENSCVAG00000017075	msi2a	100	94.650	ENSMAMG00000002488	-	99	94.040	Mastacembelus_armatus
ENSCVAG00000017075	msi2a	100	99.674	ENSMAMG00000010503	msi2a	100	100.000	Mastacembelus_armatus
ENSCVAG00000017075	msi2a	99	99.000	ENSMZEG00005007676	msi2a	96	99.588	Maylandia_zebra
ENSCVAG00000017075	msi2a	100	86.932	ENSMAUG00000003862	Msi2	100	87.356	Mesocricetus_auratus
ENSCVAG00000017075	msi2a	100	87.320	ENSMICG00000013598	-	100	86.280	Microcebus_murinus
ENSCVAG00000017075	msi2a	100	70.977	ENSMICG00000032913	-	100	70.690	Microcebus_murinus
ENSCVAG00000017075	msi2a	100	87.179	ENSMOCG00000005820	Msi2	100	87.608	Microtus_ochrogaster
ENSCVAG00000017075	msi2a	96	90.741	ENSMMOG00000008348	msi2a	90	100.000	Mola_mola
ENSCVAG00000017075	msi2a	76	83.019	ENSMODG00000014790	MSI2	100	83.654	Monodelphis_domestica
ENSCVAG00000017075	msi2a	100	99.424	ENSMALG00000000071	msi2a	100	100.000	Monopterus_albus
ENSCVAG00000017075	msi2a	100	87.179	MGP_CAROLIEiJ_G0016948	Msi2	100	96.460	Mus_caroli
ENSCVAG00000017075	msi2a	100	87.179	ENSMUSG00000069769	Msi2	100	96.460	Mus_musculus
ENSCVAG00000017075	msi2a	100	87.179	MGP_PahariEiJ_G0018079	Msi2	100	96.460	Mus_pahari
ENSCVAG00000017075	msi2a	100	87.179	MGP_SPRETEiJ_G0017795	Msi2	100	96.460	Mus_spretus
ENSCVAG00000017075	msi2a	97	88.776	ENSMPUG00000015377	MSI2	97	86.645	Mustela_putorius_furo
ENSCVAG00000017075	msi2a	97	88.776	ENSMLUG00000007865	MSI2	97	86.319	Myotis_lucifugus
ENSCVAG00000017075	msi2a	100	87.179	ENSNGAG00000017807	Msi2	100	87.608	Nannospalax_galili
ENSCVAG00000017075	msi2a	100	99.588	ENSNBRG00000014596	msi2a	100	99.227	Neolamprologus_brichardi
ENSCVAG00000017075	msi2a	92	91.943	ENSNLEG00000008059	MSI2	96	92.891	Nomascus_leucogenys
ENSCVAG00000017075	msi2a	72	83.553	ENSOPRG00000000872	-	64	83.553	Ochotona_princeps
ENSCVAG00000017075	msi2a	100	87.464	ENSODEG00000011974	MSI2	100	87.896	Octodon_degus
ENSCVAG00000017075	msi2a	62	100.000	ENSONIG00000001972	msi2a	84	100.000	Oreochromis_niloticus
ENSCVAG00000017075	msi2a	97	92.308	ENSOANG00000005667	MSI2	99	75.887	Ornithorhynchus_anatinus
ENSCVAG00000017075	msi2a	97	88.776	ENSOCUG00000010440	MSI2	97	86.645	Oryctolagus_cuniculus
ENSCVAG00000017075	msi2a	100	100.000	ENSORLG00000009671	msi2a	100	99.485	Oryzias_latipes
ENSCVAG00000017075	msi2a	100	99.349	ENSORLG00020021556	msi2a	100	100.000	Oryzias_latipes_hni
ENSCVAG00000017075	msi2a	100	100.000	ENSORLG00015004592	msi2a	100	99.485	Oryzias_latipes_hsok
ENSCVAG00000017075	msi2a	100	100.000	ENSOMEG00000000146	msi2a	100	100.000	Oryzias_melastigma
ENSCVAG00000017075	msi2a	97	85.034	ENSOGAG00000005621	MSI2	99	83.062	Otolemur_garnettii
ENSCVAG00000017075	msi2a	94	87.842	ENSPPAG00000037697	MSI2	100	88.308	Pan_paniscus
ENSCVAG00000017075	msi2a	95	89.965	ENSPPRG00000001848	MSI2	92	93.333	Panthera_pardus
ENSCVAG00000017075	msi2a	94	87.342	ENSPTIG00000021678	MSI2	96	87.821	Panthera_tigris_altaica
ENSCVAG00000017075	msi2a	78	75.314	ENSPTIG00000021873	-	91	75.314	Panthera_tigris_altaica
ENSCVAG00000017075	msi2a	92	91.943	ENSPTRG00000009437	MSI2	100	88.308	Pan_troglodytes
ENSCVAG00000017075	msi2a	100	87.320	ENSPANG00000022319	MSI2	100	86.280	Papio_anubis
ENSCVAG00000017075	msi2a	52	95.604	ENSPKIG00000017107	-	81	95.604	Paramormyrops_kingsleyae
ENSCVAG00000017075	msi2a	95	90.102	ENSPKIG00000007038	-	96	93.004	Paramormyrops_kingsleyae
ENSCVAG00000017075	msi2a	100	95.062	ENSPSIG00000008618	MSI2	100	86.207	Pelodiscus_sinensis
ENSCVAG00000017075	msi2a	99	99.000	ENSPMGG00000005888	msi2a	96	99.000	Periophthalmus_magnuspinnatus
ENSCVAG00000017075	msi2a	55	96.460	ENSPEMG00000021793	-	100	96.460	Peromyscus_maniculatus_bairdii
ENSCVAG00000017075	msi2a	100	85.794	ENSPCIG00000006063	MSI2	100	86.197	Phascolarctos_cinereus
ENSCVAG00000017075	msi2a	61	99.048	ENSPFOG00000019337	MSI2	92	99.048	Poecilia_formosa
ENSCVAG00000017075	msi2a	62	100.000	ENSPLAG00000000436	msi2a	76	96.479	Poecilia_latipinna
ENSCVAG00000017075	msi2a	58	100.000	ENSPMEG00000013247	msi2a	75	100.000	Poecilia_mexicana
ENSCVAG00000017075	msi2a	100	99.670	ENSPREG00000000881	msi2a	96	99.670	Poecilia_reticulata
ENSCVAG00000017075	msi2a	92	89.286	ENSPPYG00000008244	-	94	88.889	Pongo_abelii
ENSCVAG00000017075	msi2a	88	61.778	ENSPCAG00000010552	MSI2	100	56.809	Procavia_capensis
ENSCVAG00000017075	msi2a	55	95.420	ENSPCOG00000019195	-	93	95.420	Propithecus_coquereli
ENSCVAG00000017075	msi2a	92	84.532	ENSPVAG00000017053	MSI2	100	79.322	Pteropus_vampyrus
ENSCVAG00000017075	msi2a	100	99.023	ENSPNYG00000018393	msi2a	100	99.588	Pundamilia_nyererei
ENSCVAG00000017075	msi2a	100	95.885	ENSPNAG00000014957	msi2a	100	94.344	Pygocentrus_nattereri
ENSCVAG00000017075	msi2a	100	96.296	ENSPNAG00000000844	msi2b	100	92.802	Pygocentrus_nattereri
ENSCVAG00000017075	msi2a	92	92.424	ENSRNOG00000025338	Msi2	95	92.075	Rattus_norvegicus
ENSCVAG00000017075	msi2a	51	73.626	ENSRBIG00000032064	-	84	88.158	Rhinopithecus_bieti
ENSCVAG00000017075	msi2a	55	96.491	ENSRROG00000034421	-	92	96.491	Rhinopithecus_roxellana
ENSCVAG00000017075	msi2a	92	92.381	ENSSBOG00000026425	MSI2	100	88.308	Saimiri_boliviensis_boliviensis
ENSCVAG00000017075	msi2a	94	87.842	ENSSHAG00000008672	MSI2	100	88.308	Sarcophilus_harrisii
ENSCVAG00000017075	msi2a	93	89.860	ENSSFOG00015021687	-	97	93.243	Scleropages_formosus
ENSCVAG00000017075	msi2a	100	83.673	ENSSFOG00015012168	msi2b	100	72.304	Scleropages_formosus
ENSCVAG00000017075	msi2a	100	99.424	ENSSMAG00000018484	msi2a	100	100.000	Scophthalmus_maximus
ENSCVAG00000017075	msi2a	100	99.712	ENSSDUG00000014507	msi2a	100	100.000	Seriola_dumerili
ENSCVAG00000017075	msi2a	99	83.801	ENSSDUG00000021968	-	99	94.040	Seriola_dumerili
ENSCVAG00000017075	msi2a	99	99.667	ENSSLDG00000017172	msi2a	96	99.667	Seriola_lalandi_dorsalis
ENSCVAG00000017075	msi2a	62	92.405	ENSSPUG00000000913	-	94	92.405	Sphenodon_punctatus
ENSCVAG00000017075	msi2a	96	99.660	ENSSPAG00000017793	msi2a	96	100.000	Stegastes_partitus
ENSCVAG00000017075	msi2a	96	91.837	ENSSSCG00000038505	MSI2	96	91.837	Sus_scrofa
ENSCVAG00000017075	msi2a	76	83.491	ENSTGUG00000008452	MSI2	100	84.135	Taeniopygia_guttata
ENSCVAG00000017075	msi2a	96	94.656	ENSTRUG00000021248	msi2a	95	93.401	Takifugu_rubripes
ENSCVAG00000017075	msi2a	79	77.686	ENSTBEG00000001241	MSI2	73	77.686	Tupaia_belangeri
ENSCVAG00000017075	msi2a	93	84.034	ENSTTRG00000002189	MSI2	91	94.737	Tursiops_truncatus
ENSCVAG00000017075	msi2a	93	93.007	ENSUAMG00000000700	MSI2	96	93.007	Ursus_americanus
ENSCVAG00000017075	msi2a	89	91.803	ENSUMAG00000000505	MSI2	95	91.803	Ursus_maritimus
ENSCVAG00000017075	msi2a	60	81.768	ENSVPAG00000006837	-	62	81.868	Vicugna_pacos
ENSCVAG00000017075	msi2a	100	87.464	ENSVVUG00000011783	MSI2	98	91.324	Vulpes_vulpes
ENSCVAG00000017075	msi2a	100	100.000	ENSXCOG00000006113	msi2a	100	97.680	Xiphophorus_couchianus
ENSCVAG00000017075	msi2a	100	99.712	ENSXMAG00000000608	msi2a	100	100.000	Xiphophorus_maculatus