EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000017166 (Gene tree)
Gene ID: 107095717
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 5825 bases
Position: chrKL652523.1:2067063-2072887
Accession: 107095717
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000014507	zf-C2H2	PF00096.26	7.8e-13	1	2
ENSCVAP00000014507	zf-C2H2	PF00096.26	7.8e-13	2	2
ENSCVAP00000014507	zf-met	PF12874.7	7.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000022347	-	3786	XM_015391964	ENSCVAP00000014507	371 (aa)	XP_015247450	UPI0007429256

Gene Model

Click here to download ENSCVAG00000017166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000017166's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000017166	prdm12b	71	41.176	ENSCVAG00000013692	prdm5	91	42.105
ENSCVAG00000017166	prdm12b	100	78.462	ENSCVAG00000000944	-	100	77.949
ENSCVAG00000017166	prdm12b	55	48.000	ENSCVAG00000002242	-	78	48.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000017166	prdm12b	92	82.111	ENSG00000130711	PRDM12	99	76.862	Homo_sapiens
ENSCVAG00000017166	prdm12b	100	89.062	ENSAPOG00000016051	prdm12b	100	90.104	Acanthochromis_polyacanthus
ENSCVAG00000017166	prdm12b	100	66.933	ENSAPOG00000018234	-	100	66.400	Acanthochromis_polyacanthus
ENSCVAG00000017166	prdm12b	90	80.781	ENSAMEG00000016234	PRDM12	99	81.081	Ailuropoda_melanoleuca
ENSCVAG00000017166	prdm12b	100	89.418	ENSACIG00000019578	prdm12b	100	88.889	Amphilophus_citrinellus
ENSCVAG00000017166	prdm12b	100	79.167	ENSACIG00000005193	-	100	78.385	Amphilophus_citrinellus
ENSCVAG00000017166	prdm12b	100	88.158	ENSAOCG00000015040	prdm12b	100	89.920	Amphiprion_ocellaris
ENSCVAG00000017166	prdm12b	100	88.859	ENSAPEG00000015092	prdm12b	100	89.655	Amphiprion_percula
ENSCVAG00000017166	prdm12b	100	72.449	ENSAPEG00000022849	-	99	72.959	Amphiprion_percula
ENSCVAG00000017166	prdm12b	100	78.701	ENSATEG00000014595	-	98	82.353	Anabas_testudineus
ENSCVAG00000017166	prdm12b	94	80.802	ENSANAG00000020616	PRDM12	96	82.544	Aotus_nancymaae
ENSCVAG00000017166	prdm12b	100	88.204	ENSACLG00000011876	prdm12b	100	86.863	Astatotilapia_calliptera
ENSCVAG00000017166	prdm12b	100	76.574	ENSACLG00000007631	-	100	76.010	Astatotilapia_calliptera
ENSCVAG00000017166	prdm12b	100	82.086	ENSAMXG00000033665	prdm12b	100	81.818	Astyanax_mexicanus
ENSCVAG00000017166	prdm12b	100	81.016	ENSAMXG00000008540	PRDM12	100	80.863	Astyanax_mexicanus
ENSCVAG00000017166	prdm12b	92	82.405	ENSBTAG00000023797	PRDM12	99	77.898	Bos_taurus
ENSCVAG00000017166	prdm12b	92	82.111	ENSCJAG00000020540	PRDM12	99	77.358	Callithrix_jacchus
ENSCVAG00000017166	prdm12b	81	82.609	ENSCAFG00000023076	PRDM12	99	77.039	Canis_familiaris
ENSCVAG00000017166	prdm12b	92	82.111	ENSCAFG00020024046	PRDM12	99	77.212	Canis_lupus_dingo
ENSCVAG00000017166	prdm12b	92	82.111	ENSCHIG00000025005	PRDM12	99	77.628	Capra_hircus
ENSCVAG00000017166	prdm12b	87	81.988	ENSCPOG00000005901	PRDM12	95	81.988	Cavia_porcellus
ENSCVAG00000017166	prdm12b	92	82.111	ENSCCAG00000037485	PRDM12	99	77.419	Cebus_capucinus
ENSCVAG00000017166	prdm12b	92	82.111	ENSCATG00000020327	PRDM12	99	77.419	Cercocebus_atys
ENSCVAG00000017166	prdm12b	90	82.335	ENSCLAG00000005499	PRDM12	90	81.657	Chinchilla_lanigera
ENSCVAG00000017166	prdm12b	92	82.111	ENSCSAG00000014756	PRDM12	99	76.944	Chlorocebus_sabaeus
ENSCVAG00000017166	prdm12b	100	79.357	ENSCPBG00000022628	PRDM12	99	78.976	Chrysemys_picta_bellii
ENSCVAG00000017166	prdm12b	92	82.405	ENSCGRG00001015005	Prdm12	99	77.333	Cricetulus_griseus_chok1gshd
ENSCVAG00000017166	prdm12b	100	82.796	ENSDARG00000007430	prdm12b	100	82.210	Danio_rerio
ENSCVAG00000017166	prdm12b	92	81.871	ENSDNOG00000042302	PRDM12	99	77.151	Dasypus_novemcinctus
ENSCVAG00000017166	prdm12b	85	66.866	ENSEBUG00000016780	prdm12b	74	66.567	Eptatretus_burgeri
ENSCVAG00000017166	prdm12b	95	80.627	ENSEASG00005008472	PRDM12	99	77.358	Equus_asinus_asinus
ENSCVAG00000017166	prdm12b	95	80.627	ENSECAG00000005933	PRDM12	99	77.358	Equus_caballus
ENSCVAG00000017166	prdm12b	100	81.501	ENSELUG00000009905	prdm12b	100	80.429	Esox_lucius
ENSCVAG00000017166	prdm12b	100	83.333	ENSELUG00000013674	PRDM12	100	84.085	Esox_lucius
ENSCVAG00000017166	prdm12b	92	82.111	ENSFCAG00000043086	PRDM12	99	77.688	Felis_catus
ENSCVAG00000017166	prdm12b	100	80.593	ENSFALG00000001445	PRDM12	89	79.784	Ficedula_albicollis
ENSCVAG00000017166	prdm12b	100	75.434	ENSFHEG00000007746	-	100	74.495	Fundulus_heteroclitus
ENSCVAG00000017166	prdm12b	100	95.989	ENSFHEG00000003944	prdm12b	100	95.989	Fundulus_heteroclitus
ENSCVAG00000017166	prdm12b	100	83.820	ENSGMOG00000011797	prdm12b	100	83.158	Gadus_morhua
ENSCVAG00000017166	prdm12b	100	80.593	ENSGALG00000003895	PRDM12	99	79.784	Gallus_gallus
ENSCVAG00000017166	prdm12b	100	93.103	ENSGAFG00000010827	prdm12b	99	94.164	Gambusia_affinis
ENSCVAG00000017166	prdm12b	100	89.544	ENSGACG00000016713	prdm12b	99	87.366	Gasterosteus_aculeatus
ENSCVAG00000017166	prdm12b	100	79.357	ENSGAGG00000014083	PRDM12	99	78.976	Gopherus_agassizii
ENSCVAG00000017166	prdm12b	92	81.818	ENSGGOG00000010568	PRDM12	99	76.533	Gorilla_gorilla
ENSCVAG00000017166	prdm12b	100	76.574	ENSHBUG00000022537	-	93	76.010	Haplochromis_burtoni
ENSCVAG00000017166	prdm12b	100	91.223	ENSHBUG00000022878	prdm12b	100	87.668	Haplochromis_burtoni
ENSCVAG00000017166	prdm12b	90	82.635	ENSHGLG00000013939	PRDM12	99	76.203	Heterocephalus_glaber_female
ENSCVAG00000017166	prdm12b	100	72.441	ENSHCOG00000021167	-	100	71.129	Hippocampus_comes
ENSCVAG00000017166	prdm12b	90	85.965	ENSHCOG00000003663	prdm12b	100	79.337	Hippocampus_comes
ENSCVAG00000017166	prdm12b	100	79.515	ENSIPUG00000019544	PRDM12	100	78.976	Ictalurus_punctatus
ENSCVAG00000017166	prdm12b	100	84.409	ENSIPUG00000017053	prdm12b	100	83.871	Ictalurus_punctatus
ENSCVAG00000017166	prdm12b	92	82.111	ENSSTOG00000005986	PRDM12	86	82.544	Ictidomys_tridecemlineatus
ENSCVAG00000017166	prdm12b	90	82.934	ENSJJAG00000005424	Prdm12	99	82.249	Jaculus_jaculus
ENSCVAG00000017166	prdm12b	94	78.470	ENSKMAG00000021205	-	93	78.187	Kryptolebias_marmoratus
ENSCVAG00000017166	prdm12b	100	81.931	ENSKMAG00000016921	prdm12b	100	82.673	Kryptolebias_marmoratus
ENSCVAG00000017166	prdm12b	100	88.889	ENSLBEG00000017769	prdm12b	100	88.624	Labrus_bergylta
ENSCVAG00000017166	prdm12b	100	78.947	ENSLBEG00000007776	-	100	78.158	Labrus_bergylta
ENSCVAG00000017166	prdm12b	100	80.593	ENSLACG00000017560	PRDM12	99	79.245	Latimeria_chalumnae
ENSCVAG00000017166	prdm12b	100	82.210	ENSLOCG00000005429	prdm12b	100	81.579	Lepisosteus_oculatus
ENSCVAG00000017166	prdm12b	92	81.525	ENSLAFG00000006979	PRDM12	90	81.050	Loxodonta_africana
ENSCVAG00000017166	prdm12b	100	76.596	ENSMFAG00000040322	PRDM12	99	76.596	Macaca_fascicularis
ENSCVAG00000017166	prdm12b	92	82.111	ENSMNEG00000037234	PRDM12	99	77.419	Macaca_nemestrina
ENSCVAG00000017166	prdm12b	100	89.362	ENSMAMG00000013212	prdm12b	100	89.600	Mastacembelus_armatus
ENSCVAG00000017166	prdm12b	100	74.436	ENSMAMG00000018988	-	100	73.618	Mastacembelus_armatus
ENSCVAG00000017166	prdm12b	100	76.190	ENSMZEG00005000415	PRDM12	100	75.628	Maylandia_zebra
ENSCVAG00000017166	prdm12b	98	80.274	ENSMGAG00000005438	PRDM12	91	85.030	Meleagris_gallopavo
ENSCVAG00000017166	prdm12b	100	77.540	ENSMAUG00000013040	Prdm12	99	76.738	Mesocricetus_auratus
ENSCVAG00000017166	prdm12b	92	82.111	ENSMICG00000015480	PRDM12	99	77.358	Microcebus_murinus
ENSCVAG00000017166	prdm12b	98	78.261	ENSMOCG00000021026	Prdm12	90	83.136	Microtus_ochrogaster
ENSCVAG00000017166	prdm12b	100	78.706	ENSMODG00000012108	PRDM12	99	78.495	Monodelphis_domestica
ENSCVAG00000017166	prdm12b	100	76.676	ENSMALG00000021901	prdm12b	99	74.731	Monopterus_albus
ENSCVAG00000017166	prdm12b	92	82.405	MGP_CAROLIEiJ_G0023414	Prdm12	99	77.273	Mus_caroli
ENSCVAG00000017166	prdm12b	92	82.405	ENSMUSG00000079466	Prdm12	99	77.273	Mus_musculus
ENSCVAG00000017166	prdm12b	92	82.405	MGP_PahariEiJ_G0024871	Prdm12	99	77.273	Mus_pahari
ENSCVAG00000017166	prdm12b	92	82.405	MGP_SPRETEiJ_G0024331	Prdm12	99	77.273	Mus_spretus
ENSCVAG00000017166	prdm12b	90	83.234	ENSNGAG00000018480	Prdm12	99	77.358	Nannospalax_galili
ENSCVAG00000017166	prdm12b	100	72.703	ENSNBRG00000024312	-	100	72.703	Neolamprologus_brichardi
ENSCVAG00000017166	prdm12b	100	88.127	ENSNBRG00000006727	prdm12b	100	87.863	Neolamprologus_brichardi
ENSCVAG00000017166	prdm12b	100	70.350	ENSMEUG00000003828	PRDM12	86	86.772	Notamacropus_eugenii
ENSCVAG00000017166	prdm12b	90	83.234	ENSOPRG00000008680	PRDM12	99	82.544	Ochotona_princeps
ENSCVAG00000017166	prdm12b	91	81.953	ENSODEG00000016282	PRDM12	62	81.953	Octodon_degus
ENSCVAG00000017166	prdm12b	63	76.596	ENSOANG00000001043	PRDM12	100	75.745	Ornithorhynchus_anatinus
ENSCVAG00000017166	prdm12b	83	82.848	ENSOCUG00000008241	PRDM12	96	82.848	Oryctolagus_cuniculus
ENSCVAG00000017166	prdm12b	100	87.863	ENSORLG00000007114	prdm12b	99	86.243	Oryzias_latipes
ENSCVAG00000017166	prdm12b	100	76.923	ENSORLG00000017558	-	100	76.923	Oryzias_latipes
ENSCVAG00000017166	prdm12b	100	76.726	ENSORLG00020013167	-	100	76.982	Oryzias_latipes_hni
ENSCVAG00000017166	prdm12b	100	87.105	ENSORLG00020019565	prdm12b	99	87.368	Oryzias_latipes_hni
ENSCVAG00000017166	prdm12b	100	76.923	ENSORLG00015003435	-	100	76.923	Oryzias_latipes_hsok
ENSCVAG00000017166	prdm12b	100	86.243	ENSORLG00015007621	prdm12b	99	86.243	Oryzias_latipes_hsok
ENSCVAG00000017166	prdm12b	100	86.649	ENSOMEG00000004134	prdm12b	99	86.387	Oryzias_melastigma
ENSCVAG00000017166	prdm12b	100	77.604	ENSOMEG00000007762	-	100	77.865	Oryzias_melastigma
ENSCVAG00000017166	prdm12b	92	82.111	ENSOGAG00000007557	PRDM12	98	82.544	Otolemur_garnettii
ENSCVAG00000017166	prdm12b	80	81.081	ENSPPAG00000031506	-	99	79.801	Pan_paniscus
ENSCVAG00000017166	prdm12b	100	71.774	ENSPPRG00000023024	PRDM12	84	76.106	Panthera_pardus
ENSCVAG00000017166	prdm12b	92	82.111	ENSPTRG00000043324	-	99	76.800	Pan_troglodytes
ENSCVAG00000017166	prdm12b	92	82.111	ENSPTRG00000021475	PRDM12	99	76.800	Pan_troglodytes
ENSCVAG00000017166	prdm12b	92	82.111	ENSPANG00000025967	PRDM12	99	77.419	Papio_anubis
ENSCVAG00000017166	prdm12b	90	80.838	ENSPKIG00000004305	PRDM12	94	80.240	Paramormyrops_kingsleyae
ENSCVAG00000017166	prdm12b	100	85.215	ENSPKIG00000007228	prdm12b	100	84.409	Paramormyrops_kingsleyae
ENSCVAG00000017166	prdm12b	100	79.515	ENSPSIG00000006739	PRDM12	99	78.437	Pelodiscus_sinensis
ENSCVAG00000017166	prdm12b	100	88.740	ENSPMGG00000008867	prdm12b	99	87.668	Periophthalmus_magnuspinnatus
ENSCVAG00000017166	prdm12b	100	75.064	ENSPMGG00000002356	-	100	74.300	Periophthalmus_magnuspinnatus
ENSCVAG00000017166	prdm12b	92	82.405	ENSPEMG00000009969	Prdm12	90	82.840	Peromyscus_maniculatus_bairdii
ENSCVAG00000017166	prdm12b	100	78.706	ENSPCIG00000024119	PRDM12	99	78.495	Phascolarctos_cinereus
ENSCVAG00000017166	prdm12b	100	95.174	ENSPFOG00000019841	prdm12b	100	95.174	Poecilia_formosa
ENSCVAG00000017166	prdm12b	100	92.368	ENSPLAG00000016626	prdm12b	99	93.421	Poecilia_latipinna
ENSCVAG00000017166	prdm12b	96	92.916	ENSPMEG00000016698	prdm12b	99	93.733	Poecilia_mexicana
ENSCVAG00000017166	prdm12b	95	75.414	ENSPREG00000003211	-	94	73.757	Poecilia_reticulata
ENSCVAG00000017166	prdm12b	100	93.701	ENSPREG00000015073	prdm12b	99	93.701	Poecilia_reticulata
ENSCVAG00000017166	prdm12b	94	80.802	ENSPPYG00000019694	PRDM12	92	83.234	Pongo_abelii
ENSCVAG00000017166	prdm12b	92	82.111	ENSPCOG00000022255	PRDM12	99	77.333	Propithecus_coquereli
ENSCVAG00000017166	prdm12b	92	82.111	ENSPVAG00000001511	PRDM12	99	77.333	Pteropus_vampyrus
ENSCVAG00000017166	prdm12b	100	89.153	ENSPNYG00000009607	prdm12b	100	88.095	Pundamilia_nyererei
ENSCVAG00000017166	prdm12b	100	76.190	ENSPNYG00000013589	-	100	75.628	Pundamilia_nyererei
ENSCVAG00000017166	prdm12b	100	78.740	ENSPNAG00000013396	PRDM12	100	78.478	Pygocentrus_nattereri
ENSCVAG00000017166	prdm12b	100	82.713	ENSPNAG00000024532	prdm12b	100	83.333	Pygocentrus_nattereri
ENSCVAG00000017166	prdm12b	92	82.405	ENSRNOG00000009218	Prdm12	99	77.273	Rattus_norvegicus
ENSCVAG00000017166	prdm12b	88	83.129	ENSRBIG00000042712	PRDM12	88	82.424	Rhinopithecus_bieti
ENSCVAG00000017166	prdm12b	89	83.333	ENSRROG00000043554	PRDM12	99	83.333	Rhinopithecus_roxellana
ENSCVAG00000017166	prdm12b	100	78.495	ENSSHAG00000015972	PRDM12	99	78.284	Sarcophilus_harrisii
ENSCVAG00000017166	prdm12b	100	86.889	ENSSMAG00000003754	prdm12b	100	86.632	Scophthalmus_maximus
ENSCVAG00000017166	prdm12b	100	87.532	ENSSDUG00000023498	prdm12b	100	87.240	Seriola_dumerili
ENSCVAG00000017166	prdm12b	100	79.634	ENSSDUG00000019071	-	100	78.851	Seriola_dumerili
ENSCVAG00000017166	prdm12b	100	77.957	ENSSLDG00000013562	-	100	77.419	Seriola_lalandi_dorsalis
ENSCVAG00000017166	prdm12b	100	89.005	ENSSLDG00000009557	prdm12b	100	88.451	Seriola_lalandi_dorsalis
ENSCVAG00000017166	prdm12b	100	78.976	ENSSPUG00000013424	PRDM12	99	78.437	Sphenodon_punctatus
ENSCVAG00000017166	prdm12b	100	70.942	ENSSPAG00000022420	-	100	70.681	Stegastes_partitus
ENSCVAG00000017166	prdm12b	100	86.877	ENSSPAG00000018824	prdm12b	100	88.360	Stegastes_partitus
ENSCVAG00000017166	prdm12b	92	82.111	ENSSSCG00000005703	PRDM12	99	77.212	Sus_scrofa
ENSCVAG00000017166	prdm12b	100	86.898	ENSTRUG00000018659	prdm12b	100	85.829	Takifugu_rubripes
ENSCVAG00000017166	prdm12b	100	78.075	ENSTRUG00000013239	-	100	77.540	Takifugu_rubripes
ENSCVAG00000017166	prdm12b	100	86.898	ENSTNIG00000009020	prdm12b	99	85.561	Tetraodon_nigroviridis
ENSCVAG00000017166	prdm12b	100	76.064	ENSTNIG00000005859	-	99	74.734	Tetraodon_nigroviridis
ENSCVAG00000017166	prdm12b	92	82.111	ENSUAMG00000009653	PRDM12	91	82.544	Ursus_americanus
ENSCVAG00000017166	prdm12b	92	82.111	ENSVVUG00000027662	PRDM12	78	82.544	Vulpes_vulpes
ENSCVAG00000017166	prdm12b	100	93.600	ENSXCOG00000002836	prdm12b	99	94.933	Xiphophorus_couchianus
ENSCVAG00000017166	prdm12b	100	96.000	ENSXMAG00000005537	prdm12b	100	96.000	Xiphophorus_maculatus
ENSCVAG00000017166	prdm12b	100	74.690	ENSXMAG00000028012	-	100	74.500	Xiphophorus_maculatus