EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000017344 (Gene tree)
Gene ID: 107103475
Gene Symbol: -
Alias: -
Full Name: serrate RNA effector molecule homolog
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 10415 bases
Position: chrKL653958.1:153119-163533
Accession: 107103475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000029517	ARS2	PF04959.13	3.8e-81	1	1
ENSCVAP00000029510	ARS2	PF04959.13	2.5e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000031204	-	2900	XM_015403194	ENSCVAP00000029517	802 (aa)	XP_015258680	-
ENSCVAT00000022548	-	2798	-	ENSCVAP00000029510	768 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000017344's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000017344's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000017344	-	94	57.197	ENSCVAG00000019848	srrt	90	55.514

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000017344	-	51	63.448	ENSG00000087087	SRRT	98	65.217	Homo_sapiens
ENSCVAG00000017344	-	94	53.367	ENSAPOG00000002304	srrt	90	55.062	Acanthochromis_polyacanthus
ENSCVAG00000017344	-	94	56.850	ENSACIG00000015795	srrt	89	55.917	Amphilophus_citrinellus
ENSCVAG00000017344	-	94	56.757	ENSAOCG00000009693	srrt	54	64.465	Amphiprion_ocellaris
ENSCVAG00000017344	-	91	77.792	ENSAOCG00000009189	-	90	79.615	Amphiprion_ocellaris
ENSCVAG00000017344	-	91	77.792	ENSAPEG00000020016	-	90	79.615	Amphiprion_percula
ENSCVAG00000017344	-	94	56.477	ENSAPEG00000003646	srrt	89	55.527	Amphiprion_percula
ENSCVAG00000017344	-	56	83.404	ENSATEG00000003652	-	92	82.857	Anabas_testudineus
ENSCVAG00000017344	-	94	55.781	ENSATEG00000014425	srrt	82	64.465	Anabas_testudineus
ENSCVAG00000017344	-	52	62.557	ENSACAG00000001014	SRRT	90	53.640	Anolis_carolinensis
ENSCVAG00000017344	-	95	53.883	ENSANAG00000031718	SRRT	90	54.810	Aotus_nancymaae
ENSCVAG00000017344	-	91	77.143	ENSACLG00000009423	-	90	78.272	Astatotilapia_calliptera
ENSCVAG00000017344	-	52	64.908	ENSACLG00000013156	srrt	86	54.489	Astatotilapia_calliptera
ENSCVAG00000017344	-	52	63.844	ENSAMXG00000016671	srrt	88	54.569	Astyanax_mexicanus
ENSCVAG00000017344	-	51	62.217	ENSBTAG00000001134	SRRT	90	54.887	Bos_taurus
ENSCVAG00000017344	-	77	37.143	WBGene00017085	E01A2.2	84	41.136	Caenorhabditis_elegans
ENSCVAG00000017344	-	51	62.217	ENSCJAG00000014917	SRRT	90	55.051	Callithrix_jacchus
ENSCVAG00000017344	-	95	54.933	ENSCAFG00000023538	SRRT	90	54.753	Canis_familiaris
ENSCVAG00000017344	-	95	55.012	ENSCAFG00020013358	SRRT	94	54.323	Canis_lupus_dingo
ENSCVAG00000017344	-	51	62.642	ENSCHIG00000010495	SRRT	90	55.485	Capra_hircus
ENSCVAG00000017344	-	94	54.135	ENSTSYG00000036426	SRRT	93	54.130	Carlito_syrichta
ENSCVAG00000017344	-	51	63.657	ENSCAPG00000013586	SRRT	94	55.627	Cavia_aperea
ENSCVAG00000017344	-	51	62.302	ENSCPOG00000001739	SRRT	90	54.741	Cavia_porcellus
ENSCVAG00000017344	-	51	62.443	ENSCCAG00000015877	SRRT	90	54.684	Cebus_capucinus
ENSCVAG00000017344	-	51	62.642	ENSCATG00000036306	SRRT	92	54.375	Cercocebus_atys
ENSCVAG00000017344	-	95	54.512	ENSCLAG00000007568	SRRT	90	54.684	Chinchilla_lanigera
ENSCVAG00000017344	-	51	62.443	ENSCSAG00000017996	SRRT	90	54.798	Chlorocebus_sabaeus
ENSCVAG00000017344	-	57	60.584	ENSCHOG00000007815	SRRT	61	64.754	Choloepus_hoffmanni
ENSCVAG00000017344	-	69	60.930	ENSCPBG00000011553	SRRT	72	59.512	Chrysemys_picta_bellii
ENSCVAG00000017344	-	94	41.919	ENSCSAVG00000008394	-	87	55.523	Ciona_savignyi
ENSCVAG00000017344	-	51	62.642	ENSCANG00000034556	SRRT	90	54.880	Colobus_angolensis_palliatus
ENSCVAG00000017344	-	51	62.670	ENSCGRG00001001594	Srrt	90	55.082	Cricetulus_griseus_chok1gshd
ENSCVAG00000017344	-	69	64.286	ENSCGRG00000007292	Srrt	84	58.652	Cricetulus_griseus_crigri
ENSCVAG00000017344	-	80	82.888	ENSCSEG00000005233	-	90	71.798	Cynoglossus_semilaevis
ENSCVAG00000017344	-	94	52.778	ENSDARG00000017762	srrt	90	54.310	Danio_rerio
ENSCVAG00000017344	-	51	62.443	ENSDNOG00000003851	SRRT	90	53.634	Dasypus_novemcinctus
ENSCVAG00000017344	-	95	56.373	ENSDORG00000005584	Srrt	90	55.133	Dipodomys_ordii
ENSCVAG00000017344	-	90	48.712	FBgn0033062	Ars2	66	51.991	Drosophila_melanogaster
ENSCVAG00000017344	-	75	60.000	ENSETEG00000016175	SRRT	66	60.044	Echinops_telfairi
ENSCVAG00000017344	-	76	49.921	ENSEBUG00000008517	-	73	60.284	Eptatretus_burgeri
ENSCVAG00000017344	-	95	53.930	ENSEASG00005016956	SRRT	90	54.040	Equus_asinus_asinus
ENSCVAG00000017344	-	95	53.930	ENSECAG00000012292	SRRT	90	54.040	Equus_caballus
ENSCVAG00000017344	-	83	59.016	ENSEEUG00000009117	SRRT	82	59.016	Erinaceus_europaeus
ENSCVAG00000017344	-	95	55.322	ENSELUG00000006651	srrt	90	54.964	Esox_lucius
ENSCVAG00000017344	-	91	65.947	ENSELUG00000021216	-	90	66.416	Esox_lucius
ENSCVAG00000017344	-	95	54.866	ENSFCAG00000006855	SRRT	90	54.937	Felis_catus
ENSCVAG00000017344	-	74	66.142	ENSFHEG00000002756	srrt	79	66.142	Fundulus_heteroclitus
ENSCVAG00000017344	-	53	79.955	ENSFHEG00000004105	-	90	80.090	Fundulus_heteroclitus
ENSCVAG00000017344	-	50	79.901	ENSGMOG00000018694	-	82	67.883	Gadus_morhua
ENSCVAG00000017344	-	98	82.048	ENSGAFG00000020383	-	90	81.915	Gambusia_affinis
ENSCVAG00000017344	-	52	65.668	ENSGAFG00000005423	srrt	90	53.731	Gambusia_affinis
ENSCVAG00000017344	-	91	69.054	ENSGACG00000001100	-	90	69.987	Gasterosteus_aculeatus
ENSCVAG00000017344	-	51	62.642	ENSGGOG00000001508	SRRT	90	55.019	Gorilla_gorilla
ENSCVAG00000017344	-	52	64.665	ENSHBUG00000002942	srrt	86	54.364	Haplochromis_burtoni
ENSCVAG00000017344	-	95	54.479	ENSHGLG00000008344	Srrt	90	54.419	Heterocephalus_glaber_female
ENSCVAG00000017344	-	95	55.583	ENSHGLG00100018857	Srrt	90	54.962	Heterocephalus_glaber_male
ENSCVAG00000017344	-	93	72.215	ENSHCOG00000008904	-	89	71.275	Hippocampus_comes
ENSCVAG00000017344	-	98	56.618	ENSHCOG00000005403	srrt	90	54.672	Hippocampus_comes
ENSCVAG00000017344	-	52	64.760	ENSIPUG00000021150	srrt	90	53.695	Ictalurus_punctatus
ENSCVAG00000017344	-	51	62.642	ENSSTOG00000013776	SRRT	90	54.638	Ictidomys_tridecemlineatus
ENSCVAG00000017344	-	95	55.637	ENSJJAG00000010446	Srrt	90	54.130	Jaculus_jaculus
ENSCVAG00000017344	-	91	79.024	ENSKMAG00000008468	-	90	78.907	Kryptolebias_marmoratus
ENSCVAG00000017344	-	94	57.197	ENSKMAG00000013599	srrt	89	56.291	Kryptolebias_marmoratus
ENSCVAG00000017344	-	96	55.868	ENSLBEG00000016308	srrt	80	64.318	Labrus_bergylta
ENSCVAG00000017344	-	70	68.842	ENSLBEG00000028983	-	99	71.339	Labrus_bergylta
ENSCVAG00000017344	-	94	48.106	ENSLACG00000001089	SRRT	89	46.752	Latimeria_chalumnae
ENSCVAG00000017344	-	52	54.930	ENSLOCG00000013658	srrt	97	48.886	Lepisosteus_oculatus
ENSCVAG00000017344	-	95	55.244	ENSLAFG00000007725	SRRT	90	55.499	Loxodonta_africana
ENSCVAG00000017344	-	51	62.642	ENSMFAG00000033745	SRRT	94	54.250	Macaca_fascicularis
ENSCVAG00000017344	-	95	53.293	ENSMMUG00000021255	SRRT	90	54.798	Macaca_mulatta
ENSCVAG00000017344	-	51	62.443	ENSMNEG00000041864	SRRT	92	54.250	Macaca_nemestrina
ENSCVAG00000017344	-	51	62.642	ENSMLEG00000029479	SRRT	92	54.250	Mandrillus_leucophaeus
ENSCVAG00000017344	-	91	79.342	ENSMAMG00000010681	-	90	78.250	Mastacembelus_armatus
ENSCVAG00000017344	-	52	64.120	ENSMAMG00000014311	srrt	90	54.568	Mastacembelus_armatus
ENSCVAG00000017344	-	52	64.908	ENSMZEG00005016135	srrt	86	54.489	Maylandia_zebra
ENSCVAG00000017344	-	91	77.273	ENSMZEG00005028002	-	90	78.399	Maylandia_zebra
ENSCVAG00000017344	-	51	62.217	ENSMAUG00000011386	Srrt	90	54.969	Mesocricetus_auratus
ENSCVAG00000017344	-	51	62.670	ENSMICG00000009471	SRRT	92	55.056	Microcebus_murinus
ENSCVAG00000017344	-	51	62.443	ENSMOCG00000001971	Srrt	90	53.680	Microtus_ochrogaster
ENSCVAG00000017344	-	82	73.882	ENSMMOG00000011137	-	85	73.143	Mola_mola
ENSCVAG00000017344	-	95	56.753	ENSMMOG00000016399	srrt	89	56.471	Mola_mola
ENSCVAG00000017344	-	51	60.000	ENSMODG00000004862	SRRT	88	59.488	Monodelphis_domestica
ENSCVAG00000017344	-	94	50.798	ENSMALG00000018604	srrt	90	52.720	Monopterus_albus
ENSCVAG00000017344	-	68	56.184	ENSMALG00000005567	-	97	54.727	Monopterus_albus
ENSCVAG00000017344	-	95	55.610	MGP_CAROLIEiJ_G0027870	Srrt	100	59.559	Mus_caroli
ENSCVAG00000017344	-	95	55.610	ENSMUSG00000037364	Srrt	99	59.559	Mus_musculus
ENSCVAG00000017344	-	51	63.657	MGP_PahariEiJ_G0024456	Srrt	100	59.559	Mus_pahari
ENSCVAG00000017344	-	95	55.610	MGP_SPRETEiJ_G0028875	Srrt	100	59.559	Mus_spretus
ENSCVAG00000017344	-	95	54.866	ENSMPUG00000015839	SRRT	90	55.233	Mustela_putorius_furo
ENSCVAG00000017344	-	95	54.369	ENSMLUG00000009975	SRRT	90	55.359	Myotis_lucifugus
ENSCVAG00000017344	-	51	62.443	ENSNGAG00000023715	Srrt	97	55.400	Nannospalax_galili
ENSCVAG00000017344	-	52	64.368	ENSNBRG00000019100	srrt	90	54.037	Neolamprologus_brichardi
ENSCVAG00000017344	-	94	51.145	ENSNLEG00000011987	SRRT	94	51.711	Nomascus_leucogenys
ENSCVAG00000017344	-	57	66.667	ENSOPRG00000002502	-	59	63.818	Ochotona_princeps
ENSCVAG00000017344	-	51	63.889	ENSODEG00000016856	SRRT	90	55.499	Octodon_degus
ENSCVAG00000017344	-	52	64.908	ENSONIG00000004242	srrt	90	51.605	Oreochromis_niloticus
ENSCVAG00000017344	-	91	77.332	ENSONIG00000016080	-	90	78.327	Oreochromis_niloticus
ENSCVAG00000017344	-	96	56.549	ENSOMEG00000003155	srrt	90	55.266	Oryzias_melastigma
ENSCVAG00000017344	-	98	79.276	ENSOMEG00000006963	-	90	80.052	Oryzias_melastigma
ENSCVAG00000017344	-	51	62.670	ENSOGAG00000017242	SRRT	90	55.190	Otolemur_garnettii
ENSCVAG00000017344	-	51	62.642	ENSOARG00000015645	SRRT	90	55.570	Ovis_aries
ENSCVAG00000017344	-	95	54.324	ENSPPAG00000041090	SRRT	90	55.019	Pan_paniscus
ENSCVAG00000017344	-	95	54.945	ENSPPRG00000009557	SRRT	90	55.019	Panthera_pardus
ENSCVAG00000017344	-	95	54.866	ENSPTIG00000014355	SRRT	90	54.937	Panthera_tigris_altaica
ENSCVAG00000017344	-	95	54.324	ENSPTRG00000019511	SRRT	95	53.066	Pan_troglodytes
ENSCVAG00000017344	-	51	61.333	ENSPANG00000020763	SRRT	91	54.250	Papio_anubis
ENSCVAG00000017344	-	95	56.429	ENSPKIG00000005434	srrt	90	55.199	Paramormyrops_kingsleyae
ENSCVAG00000017344	-	94	56.750	ENSPKIG00000022212	-	91	56.658	Paramormyrops_kingsleyae
ENSCVAG00000017344	-	51	62.413	ENSPSIG00000016311	SRRT	90	53.964	Pelodiscus_sinensis
ENSCVAG00000017344	-	96	56.608	ENSPMGG00000002841	srrt	89	56.516	Periophthalmus_magnuspinnatus
ENSCVAG00000017344	-	51	63.657	ENSPEMG00000010834	Srrt	90	56.266	Peromyscus_maniculatus_bairdii
ENSCVAG00000017344	-	95	49.877	ENSPMAG00000009614	-	90	49.936	Petromyzon_marinus
ENSCVAG00000017344	-	51	61.435	ENSPCIG00000000816	SRRT	90	54.135	Phascolarctos_cinereus
ENSCVAG00000017344	-	52	65.517	ENSPFOG00000005704	srrt	90	54.512	Poecilia_formosa
ENSCVAG00000017344	-	98	82.510	ENSPFOG00000016554	-	90	82.400	Poecilia_formosa
ENSCVAG00000017344	-	94	56.127	ENSPLAG00000021992	srrt	90	55.791	Poecilia_latipinna
ENSCVAG00000017344	-	98	82.152	ENSPLAG00000004526	-	90	82.157	Poecilia_latipinna
ENSCVAG00000017344	-	76	65.068	ENSPMEG00000001182	srrt	90	55.112	Poecilia_mexicana
ENSCVAG00000017344	-	98	82.405	ENSPMEG00000001520	-	93	82.290	Poecilia_mexicana
ENSCVAG00000017344	-	94	56.489	ENSPREG00000022308	srrt	90	54.883	Poecilia_reticulata
ENSCVAG00000017344	-	51	60.222	ENSPCAG00000001621	SRRT	51	60.044	Procavia_capensis
ENSCVAG00000017344	-	51	62.870	ENSPCOG00000025751	SRRT	90	54.887	Propithecus_coquereli
ENSCVAG00000017344	-	64	54.072	ENSPVAG00000000834	SRRT	96	48.054	Pteropus_vampyrus
ENSCVAG00000017344	-	52	64.908	ENSPNYG00000018710	srrt	90	54.364	Pundamilia_nyererei
ENSCVAG00000017344	-	71	56.209	ENSPNAG00000010629	srrt	88	57.778	Pygocentrus_nattereri
ENSCVAG00000017344	-	51	52.752	ENSRNOG00000048277	AABR07035787.1	87	52.752	Rattus_norvegicus
ENSCVAG00000017344	-	51	62.443	ENSRBIG00000035718	SRRT	92	54.250	Rhinopithecus_bieti
ENSCVAG00000017344	-	51	62.443	ENSRROG00000030622	SRRT	92	54.250	Rhinopithecus_roxellana
ENSCVAG00000017344	-	51	62.642	ENSSBOG00000033570	SRRT	91	54.765	Saimiri_boliviensis_boliviensis
ENSCVAG00000017344	-	53	60.043	ENSSHAG00000007349	-	70	62.697	Sarcophilus_harrisii
ENSCVAG00000017344	-	94	55.067	ENSSFOG00015017293	srrt	90	56.089	Scleropages_formosus
ENSCVAG00000017344	-	76	74.943	ENSSMAG00000018195	-	90	69.241	Scophthalmus_maximus
ENSCVAG00000017344	-	94	55.541	ENSSMAG00000015342	srrt	90	55.860	Scophthalmus_maximus
ENSCVAG00000017344	-	52	64.828	ENSSDUG00000012049	srrt	90	56.171	Seriola_dumerili
ENSCVAG00000017344	-	51	67.523	ENSSDUG00000002051	-	89	72.927	Seriola_dumerili
ENSCVAG00000017344	-	94	56.549	ENSSLDG00000017477	srrt	76	65.438	Seriola_lalandi_dorsalis
ENSCVAG00000017344	-	89	77.807	ENSSPAG00000018943	-	93	79.813	Stegastes_partitus
ENSCVAG00000017344	-	52	63.844	ENSSPAG00000005665	srrt	89	54.161	Stegastes_partitus
ENSCVAG00000017344	-	93	74.868	ENSTRUG00000000023	-	91	75.000	Takifugu_rubripes
ENSCVAG00000017344	-	52	61.991	ENSTRUG00000016075	srrt	90	52.912	Takifugu_rubripes
ENSCVAG00000017344	-	73	52.809	ENSTNIG00000011779	srrt	96	49.158	Tetraodon_nigroviridis
ENSCVAG00000017344	-	93	68.434	ENSTNIG00000003111	-	90	69.643	Tetraodon_nigroviridis
ENSCVAG00000017344	-	51	62.443	ENSTTRG00000011104	SRRT	90	55.276	Tursiops_truncatus
ENSCVAG00000017344	-	94	54.602	ENSUAMG00000027997	SRRT	92	54.603	Ursus_americanus
ENSCVAG00000017344	-	95	54.623	ENSUMAG00000011295	SRRT	90	54.981	Ursus_maritimus
ENSCVAG00000017344	-	95	54.933	ENSVVUG00000023572	SRRT	90	54.753	Vulpes_vulpes
ENSCVAG00000017344	-	71	59.954	ENSXETG00000025124	srrt	70	59.955	Xenopus_tropicalis
ENSCVAG00000017344	-	57	66.307	ENSXCOG00000013105	-	86	71.990	Xiphophorus_couchianus
ENSCVAG00000017344	-	96	56.416	ENSXMAG00000007627	srrt	89	56.177	Xiphophorus_maculatus
ENSCVAG00000017344	-	98	83.482	ENSXMAG00000002090	-	90	83.089	Xiphophorus_maculatus